RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 MPC1LP0DKB6 136 aa10.4□□□□□ -0.74
CCDC40-207ENST00000572253 AQP1P29972 269 aa10.4□□□□□ -0.74
CCDC40-207ENST00000572253 SMAD3P84022 425 aaKnown RBP10.4□□□□□ -0.74
CCDC40-207ENST00000572253 VEPH1Q14D04 833 aa10.4□□□□□ -0.74
CCDC40-207ENST00000572253 ARMCX4Q5H9R4 360 aa10.4□□□□□ -0.74
CCDC40-207ENST00000572253 MLIPQ5VWP3 458 aa10.4□□□□□ -0.74
CCDC40-207ENST00000572253 CCDC71Q8IV32 467 aaPredicted RBP10.4□□□□□ -0.74
CCDC40-207ENST00000572253 CLECL1Q8IZS7 167 aa10.4□□□□□ -0.74
CCDC40-207ENST00000572253 SYNPOQ8N3V7 929 aa10.4□□□□□ -0.74
CCDC40-207ENST00000572253 APH1BQ8WW43 257 aa10.4□□□□□ -0.74
CCDC40-207ENST00000572253 PIK3R3Q92569 461 aa10.4□□□□□ -0.74
CCDC40-207ENST00000572253 UPF1Q92900 1129 aaKnown RBP eCLIP10.4□□□□□ -0.74
CCDC40-207ENST00000572253 BHMTQ93088 406 aa10.4□□□□□ -0.74
CCDC40-207ENST00000572253 SH3KBP1Q96B97 665 aa10.4□□□□□ -0.74
CCDC40-207ENST00000572253 YME1L1Q96TA2 773 aa10.4□□□□□ -0.74
CCDC40-207ENST00000572253 CHCHD6Q9BRQ6 235 aa10.4□□□□□ -0.74
CCDC40-207ENST00000572253 KLF16Q9BXK1 252 aaPredicted RBP10.4□□□□□ -0.74
CCDC40-207ENST00000572253 SIRT5Q9NXA8 310 aa10.4□□□□□ -0.74
CCDC40-207ENST00000572253 IFT52Q9Y366 437 aa10.4□□□□□ -0.74
CCDC40-207ENST00000572253 MGAT4DA6NG13 374 aa10.4□□□□□ -0.74
CCDC40-207ENST00000572253 NT5C1B-RDH14C9J2C7 533 aa10.4□□□□□ -0.74
CCDC40-207ENST00000572253 HAT1O14929 419 aa10.4□□□□□ -0.74
CCDC40-207ENST00000572253 KPNA5O15131 536 aa10.4□□□□□ -0.74
CCDC40-207ENST00000572253 SLC16A5O15375 505 aa10.4□□□□□ -0.74
CCDC40-207ENST00000572253 ITGA2P17301 1181 aa10.4□□□□□ -0.74
CCDC40-207ENST00000572253 AOAHP28039 575 aa10.4□□□□□ -0.74
CCDC40-207ENST00000572253 GJA8P48165 433 aa10.4□□□□□ -0.74
CCDC40-207ENST00000572253 SPIBQ01892 262 aa10.4□□□□□ -0.74
CCDC40-207ENST00000572253 PLD1Q13393 1074 aa10.4□□□□□ -0.74
CCDC40-207ENST00000572253 XKR6Q5GH73 641 aa10.4□□□□□ -0.74
CCDC40-207ENST00000572253 METTL3Q86U44 580 aaKnown RBP10.4□□□□□ -0.74
CCDC40-207ENST00000572253 CPA6Q8N4T0 437 aa10.4□□□□□ -0.74
CCDC40-207ENST00000572253 CAPSLQ8WWF8 208 aa10.4□□□□□ -0.74
CCDC40-207ENST00000572253 GGHQ92820 318 aa10.4□□□□□ -0.74
CCDC40-207ENST00000572253 FEVQ99581 238 aa10.4□□□□□ -0.74
CCDC40-207ENST00000572253 CRNNQ9UBG3 495 aaPredicted RBP10.4□□□□□ -0.74
CCDC40-207ENST00000572253 SLCO3A1Q9UIG8 710 aa10.4□□□□□ -0.74
CCDC40-207ENST00000572253 POU2F3Q9UKI9 436 aa10.4□□□□□ -0.74
CCDC40-207ENST00000572253 SERTM1A2A2V5 107 aa10.4□□□□□ -0.75
CCDC40-207ENST00000572253 PDZK1P1A8MUH7 402 aa10.4□□□□□ -0.75
CCDC40-207ENST00000572253 M0R082 166 aa10.4□□□□□ -0.75
CCDC40-207ENST00000572253 GTF2E2P29084 291 aaKnown RBP10.4□□□□□ -0.75
CCDC40-207ENST00000572253 OR1D2P34982 312 aa10.4□□□□□ -0.75
CCDC40-207ENST00000572253 SLC6A12P48065 614 aa10.4□□□□□ -0.75
CCDC40-207ENST00000572253 ZNF157P51786 506 aaPredicted RBP10.4□□□□□ -0.75
CCDC40-207ENST00000572253 NKX3-2P78367 333 aa10.4□□□□□ -0.75
CCDC40-207ENST00000572253 PPIGQ13427 754 aaKnown RBP eCLIP10.4□□□□□ -0.75
CCDC40-207ENST00000572253 C10orf62Q5T681 223 aaPredicted RBP10.4□□□□□ -0.75
CCDC40-207ENST00000572253 LIPJQ5W064 366 aa10.4□□□□□ -0.75
CCDC40-207ENST00000572253 USP45Q70EL2 814 aa10.4□□□□□ -0.75
CCDC40-207ENST00000572253 DENND6BQ8NEG7 585 aa10.4□□□□□ -0.75
CCDC40-207ENST00000572253 BTNL2Q9UIR0 455 aa10.4□□□□□ -0.75
CCDC40-207ENST00000572253 CFL2Q9Y281 166 aa10.4□□□□□ -0.75
CCDC40-207ENST00000572253 PADI2Q9Y2J8 665 aa10.4□□□□□ -0.75
CCDC40-207ENST00000572253 LATS1O95835 1130 aa10.39□□□□□ -0.75
CCDC40-207ENST00000572253 CCR7P32248 378 aa10.39□□□□□ -0.75
CCDC40-207ENST00000572253 PCGF2P35227 344 aa10.39□□□□□ -0.75
CCDC40-207ENST00000572253 TEKQ02763 1124 aa10.39□□□□□ -0.75
CCDC40-207ENST00000572253 LRRC74AQ0VAA2 488 aa10.39□□□□□ -0.75
CCDC40-207ENST00000572253 EIF4HQ15056 248 aaKnown RBP10.39□□□□□ -0.75
CCDC40-207ENST00000572253 IFI44LQ53G44 452 aa10.39□□□□□ -0.75
CCDC40-207ENST00000572253 KIAA1841Q6NSI8 718 aa10.39□□□□□ -0.75
CCDC40-207ENST00000572253 PARP16Q8N5Y8 322 aa10.39□□□□□ -0.75
CCDC40-207ENST00000572253 C7orf34Q96L11 122 aa10.39□□□□□ -0.75
CCDC40-207ENST00000572253 ATG10Q9H0Y0 220 aa10.39□□□□□ -0.75
CCDC40-207ENST00000572253 KIAA1522Q9P206 1035 aaPredicted RBP10.39□□□□□ -0.75
CCDC40-207ENST00000572253 MN1Q10571 1320 aaPredicted RBP10.39□□□□□ -0.75
CCDC40-207ENST00000572253 PSMD11O00231 422 aa10.39□□□□□ -0.75
CCDC40-207ENST00000572253 STSP08842 583 aa10.39□□□□□ -0.75
CCDC40-207ENST00000572253 LAMP1P11279 417 aa10.39□□□□□ -0.75
CCDC40-207ENST00000572253 MAGP20916 626 aa10.39□□□□□ -0.75
CCDC40-207ENST00000572253 GKP32189 559 aa10.39□□□□□ -0.75
CCDC40-207ENST00000572253 CSNK1DP48730 415 aa10.39□□□□□ -0.75
CCDC40-207ENST00000572253 NUDT6P53370 316 aa10.39□□□□□ -0.75
CCDC40-207ENST00000572253 CDC42P60953 191 aa10.39□□□□□ -0.75
CCDC40-207ENST00000572253 KCNJ10P78508 379 aa10.39□□□□□ -0.75
CCDC40-207ENST00000572253 PRSS36Q5K4E3 855 aa10.39□□□□□ -0.75
CCDC40-207ENST00000572253 CCBE1Q6UXH8 406 aaPredicted RBP10.39□□□□□ -0.75
CCDC40-207ENST00000572253 ZNF367Q7RTV3 350 aa10.39□□□□□ -0.75
CCDC40-207ENST00000572253 ASB11Q8WXH4 323 aa10.39□□□□□ -0.75
CCDC40-207ENST00000572253 HHIPQ96QV1 700 aa10.39□□□□□ -0.75
CCDC40-207ENST00000572253 ZNF282Q9UDV7 671 aaPredicted RBP10.39□□□□□ -0.75
CCDC40-207ENST00000572253 KLHL3Q9UH77 587 aa10.39□□□□□ -0.75
CCDC40-207ENST00000572253 ZNF451Q9Y4E5 1061 aa10.39□□□□□ -0.75
CCDC40-207ENST00000572253 NUP214P35658 2090 aaPredicted RBP10.39□□□□□ -0.75
CCDC40-207ENST00000572253 EFCAB10A6NFE3 127 aa10.39□□□□□ -0.75
CCDC40-207ENST00000572253 SCAMP2O15127 329 aaKnown RBP10.39□□□□□ -0.75
CCDC40-207ENST00000572253 TLL1O43897 1013 aa10.39□□□□□ -0.75
CCDC40-207ENST00000572253 UGDHO60701 494 aa10.39□□□□□ -0.75
CCDC40-207ENST00000572253 CCNKO75909 580 aa10.39□□□□□ -0.75
CCDC40-207ENST00000572253 IFNA14P01570 189 aa10.39□□□□□ -0.75
CCDC40-207ENST00000572253 UGT2B15P54855 530 aa10.39□□□□□ -0.75
CCDC40-207ENST00000572253 WNT3P56703 355 aa10.39□□□□□ -0.75
CCDC40-207ENST00000572253 ZDHHC20Q5W0Z9 365 aa10.39□□□□□ -0.75
CCDC40-207ENST00000572253 DESI1Q6ICB0 168 aa10.39□□□□□ -0.75
CCDC40-207ENST00000572253 TPRG1Q6ZUI0 275 aa10.39□□□□□ -0.75
CCDC40-207ENST00000572253 RNF180Q86T96 592 aa10.39□□□□□ -0.75
CCDC40-207ENST00000572253 NPAS3Q8IXF0 933 aa10.39□□□□□ -0.75
CCDC40-207ENST00000572253 LGI4Q8N135 537 aa10.39□□□□□ -0.75
CCDC40-207ENST00000572253 SLC5A8Q8N695 610 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms