RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 HMBSP08397 361 aa4.17□□□□□ -1.74
LINC00560-201ENST00000564593 ATP6V1B1P15313 513 aa4.17□□□□□ -1.74
LINC00560-201ENST00000564593 CYP2A7P20853 494 aa4.17□□□□□ -1.74
LINC00560-201ENST00000564593 DUTP33316 252 aaKnown RBP4.17□□□□□ -1.74
LINC00560-201ENST00000564593 IER3P46695 156 aa4.17□□□□□ -1.74
LINC00560-201ENST00000564593 EXT1Q16394 746 aa4.17□□□□□ -1.74
LINC00560-201ENST00000564593 CUZD1Q86UP6 607 aa4.17□□□□□ -1.74
LINC00560-201ENST00000564593 CCDC60Q8IWA6 550 aaPredicted RBP4.17□□□□□ -1.74
LINC00560-201ENST00000564593 PRSS35Q8N3Z0 413 aa4.17□□□□□ -1.74
LINC00560-201ENST00000564593 AMER3Q8N944 861 aa4.17□□□□□ -1.74
LINC00560-201ENST00000564593 TMEM178AQ8NBL3 297 aa4.17□□□□□ -1.74
LINC00560-201ENST00000564593 GPRC5AQ8NFJ5 357 aa4.17□□□□□ -1.74
LINC00560-201ENST00000564593 RBM41Q96IZ5 413 aaKnown RBP4.17□□□□□ -1.74
LINC00560-201ENST00000564593 CACNG6Q9BXT2 260 aa4.17□□□□□ -1.74
LINC00560-201ENST00000564593 THAP2Q9H0W7 228 aa4.17□□□□□ -1.74
LINC00560-201ENST00000564593 UBQLN3Q9H347 655 aa4.17□□□□□ -1.74
LINC00560-201ENST00000564593 ATP13A3Q9H7F0 1226 aa4.17□□□□□ -1.74
LINC00560-201ENST00000564593 C10orf88Q9H8K7 445 aa4.17□□□□□ -1.74
LINC00560-201ENST00000564593 SLC12A6Q9UHW9 1150 aa4.17□□□□□ -1.74
LINC00560-201ENST00000564593 NOCTQ9UK39 431 aaKnown RBP4.17□□□□□ -1.74
LINC00560-201ENST00000564593 CEP164Q9UPV0 1460 aa4.16□□□□□ -1.74
LINC00560-201ENST00000564593 A0A0B4J203 849 aa4.16□□□□□ -1.74
LINC00560-201ENST00000564593 AP2A2O94973 939 aa4.16□□□□□ -1.74
LINC00560-201ENST00000564593 C8orf89P0DMQ9 161 aa4.16□□□□□ -1.74
LINC00560-201ENST00000564593 DLATP10515 647 aaKnown RBP4.16□□□□□ -1.74
LINC00560-201ENST00000564593 OR3A1P47881 315 aa4.16□□□□□ -1.74
LINC00560-201ENST00000564593 SP3Q02447 781 aa4.16□□□□□ -1.74
LINC00560-201ENST00000564593 C17orf67Q0P5P2 114 aa4.16□□□□□ -1.74
LINC00560-201ENST00000564593 TEAD2Q15562 447 aa4.16□□□□□ -1.74
LINC00560-201ENST00000564593 ZNF789Q5FWF6 425 aa4.16□□□□□ -1.74
LINC00560-201ENST00000564593 FFAR4Q5NUL3 377 aa4.16□□□□□ -1.74
LINC00560-201ENST00000564593 ZNF790Q6PG37 636 aa4.16□□□□□ -1.74
LINC00560-201ENST00000564593 KCTD9Q7L273 389 aa4.16□□□□□ -1.74
LINC00560-201ENST00000564593 PRUNE1Q86TP1 453 aa4.16□□□□□ -1.74
LINC00560-201ENST00000564593 APLFQ8IW19 511 aaPredicted RBP4.16□□□□□ -1.74
LINC00560-201ENST00000564593 CCDC83Q8IWF9 413 aa4.16□□□□□ -1.74
LINC00560-201ENST00000564593 GBP7Q8N8V2 638 aaPredicted RBP4.16□□□□□ -1.74
LINC00560-201ENST00000564593 OR4C15Q8NGM1 316 aa4.16□□□□□ -1.74
LINC00560-201ENST00000564593 OR1L3Q8NH93 324 aa4.16□□□□□ -1.74
LINC00560-201ENST00000564593 CKAP2Q8WWK9 683 aa4.16□□□□□ -1.74
LINC00560-201ENST00000564593 SNRNP40Q96DI7 357 aaKnown RBP4.16□□□□□ -1.74
LINC00560-201ENST00000564593 C10orf90Q96M02 699 aa4.16□□□□□ -1.74
LINC00560-201ENST00000564593 TSSK2Q96PF2 358 aa4.16□□□□□ -1.74
LINC00560-201ENST00000564593 LPAR4Q99677 370 aa4.16□□□□□ -1.74
LINC00560-201ENST00000564593 ZNF71Q9NQZ8 489 aaPredicted RBP4.16□□□□□ -1.74
LINC00560-201ENST00000564593 IARS2Q9NSE4 1012 aaKnown RBP4.16□□□□□ -1.74
LINC00560-201ENST00000564593 AGTPBP1Q9UPW5 1226 aa4.16□□□□□ -1.74
LINC00560-201ENST00000564593 ITM2BQ9Y287 266 aa4.16□□□□□ -1.74
LINC00560-201ENST00000564593 KIAA1217Q5T5P2 1943 aa4.16□□□□□ -1.74
LINC00560-201ENST00000564593 BIVM-ERCC5R4GMW8 1640 aa4.15□□□□□ -1.74
LINC00560-201ENST00000564593 IGHV4-4A0A075B6R2 117 aa4.15□□□□□ -1.74
LINC00560-201ENST00000564593 MSGN1A6NI15 193 aa4.15□□□□□ -1.74
LINC00560-201ENST00000564593 E5RGE8 158 aa4.15□□□□□ -1.74
LINC00560-201ENST00000564593 PAK4O96013 591 aaPredicted RBP4.15□□□□□ -1.74
LINC00560-201ENST00000564593 PATE4P0C8F1 98 aa4.15□□□□□ -1.74
LINC00560-201ENST00000564593 SLC2A2P11168 524 aaPredicted RBP4.15□□□□□ -1.74
LINC00560-201ENST00000564593 CD59P13987 128 aa4.15□□□□□ -1.74
LINC00560-201ENST00000564593 AKAP17AQ02040 695 aaKnown RBP4.15□□□□□ -1.74
LINC00560-201ENST00000564593 CETN1Q12798 172 aa4.15□□□□□ -1.74
LINC00560-201ENST00000564593 TRIM29Q14134 588 aa4.15□□□□□ -1.74
LINC00560-201ENST00000564593 FUT11Q495W5 492 aa4.15□□□□□ -1.74
LINC00560-201ENST00000564593 ZNF542PQ5EBM4 170 aa4.15□□□□□ -1.74
LINC00560-201ENST00000564593 CPEB2Q7Z5Q1 589 aaKnown RBP4.15□□□□□ -1.74
LINC00560-201ENST00000564593 SIAH3Q8IW03 269 aa4.15□□□□□ -1.74
LINC00560-201ENST00000564593 AQP12AQ8IXF9 295 aa4.15□□□□□ -1.74
LINC00560-201ENST00000564593 APOBEC4Q8WW27 367 aaKnown RBP4.15□□□□□ -1.74
LINC00560-201ENST00000564593 ZNF501Q96CX3 271 aaPredicted RBP4.15□□□□□ -1.74
LINC00560-201ENST00000564593 PRAC1Q96KF2 57 aa4.15□□□□□ -1.74
LINC00560-201ENST00000564593 CCDC43Q96MW1 224 aaKnown RBP4.15□□□□□ -1.74
LINC00560-201ENST00000564593 F2RL3Q96RI0 385 aa4.15□□□□□ -1.74
LINC00560-201ENST00000564593 NKX3-1Q99801 234 aaPredicted RBP4.15□□□□□ -1.74
LINC00560-201ENST00000564593 C17orf62Q9BQA9 187 aa4.15□□□□□ -1.74
LINC00560-201ENST00000564593 PIGQQ9BRB3 760 aa4.15□□□□□ -1.74
LINC00560-201ENST00000564593 ALKBH7Q9BT30 221 aaPredicted RBP4.15□□□□□ -1.74
LINC00560-201ENST00000564593 SLC5A7Q9GZV3 580 aa4.15□□□□□ -1.74
LINC00560-201ENST00000564593 EPHA6Q9UF33 1036 aa4.15□□□□□ -1.74
LINC00560-201ENST00000564593 IL36AQ9UHA7 158 aa4.15□□□□□ -1.74
LINC00560-201ENST00000564593 PRDM4Q9UKN5 801 aa4.15□□□□□ -1.74
LINC00560-201ENST00000564593 NSG2Q9Y328 171 aa4.15□□□□□ -1.74
LINC00560-201ENST00000564593 ABCC8Q09428 1581 aa4.15□□□□□ -1.75
LINC00560-201ENST00000564593 C13orf42A0A1B0GVH6 325 aa4.14□□□□□ -1.75
LINC00560-201ENST00000564593 A0A1W2PRV1 198 aa4.14□□□□□ -1.75
LINC00560-201ENST00000564593 H3BMM5 538 aa4.14□□□□□ -1.75
LINC00560-201ENST00000564593 TTI1O43156 1089 aa4.14□□□□□ -1.75
LINC00560-201ENST00000564593 ATP9AO75110 1047 aa4.14□□□□□ -1.75
LINC00560-201ENST00000564593 KRT33AO76009 404 aa4.14□□□□□ -1.75
LINC00560-201ENST00000564593 AMBPP02760 352 aa4.14□□□□□ -1.75
LINC00560-201ENST00000564593 RAF1P04049 648 aa4.14□□□□□ -1.75
LINC00560-201ENST00000564593 YES1P07947 543 aa4.14□□□□□ -1.75
LINC00560-201ENST00000564593 PRKAR1AP10644 381 aa4.14□□□□□ -1.75
LINC00560-201ENST00000564593 UROSP10746 265 aa4.14□□□□□ -1.75
LINC00560-201ENST00000564593 CEACAM1P13688 526 aa4.14□□□□□ -1.75
LINC00560-201ENST00000564593 HOXB6P17509 224 aaKnown RBP4.14□□□□□ -1.75
LINC00560-201ENST00000564593 CLDN17P56750 224 aa4.14□□□□□ -1.75
LINC00560-201ENST00000564593 ABRQ12979 859 aa4.14□□□□□ -1.75
LINC00560-201ENST00000564593 SGCGQ13326 291 aa4.14□□□□□ -1.75
LINC00560-201ENST00000564593 ZNF74Q16587 644 aa4.14□□□□□ -1.75
LINC00560-201ENST00000564593 ZNF876PQ49A33 203 aa4.14□□□□□ -1.75
LINC00560-201ENST00000564593 SLC10A5Q5PT55 438 aa4.14□□□□□ -1.75
LINC00560-201ENST00000564593 PSRC1Q6PGN9 363 aaPredicted RBP4.14□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms