RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 GPATCH2Q9NW75 528 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 DAPK2Q9UIK4 370 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 ACSL6Q9UKU0 697 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 EXO1Q9UQ84 846 aaKnown RBP12.44□□□□□ -0.42
LDLR-207ENST00000558013 ITM2BQ9Y287 266 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 SH3GLB1Q9Y371 365 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 HCFC2Q9Y5Z7 792 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 CYP2A7P20853 494 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 FPR1P21462 350 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 RRM2P31350 389 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 PPP3CCP48454 512 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 ARHGDIAP52565 204 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 KCNJ10P78508 379 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 NPRL3Q12980 569 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 TOP3AQ13472 1001 aaPredicted RBP12.44□□□□□ -0.42
LDLR-207ENST00000558013 ZNF385BQ569K4 471 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 METTL2BQ6P1Q9 378 aaKnown RBP12.44□□□□□ -0.42
LDLR-207ENST00000558013 CBLL1Q75N03 491 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 P2RY8Q86VZ1 359 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 GALNT13Q8IUC8 556 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 ENTHD1Q8IYW4 607 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 YIPF6Q96EC8 236 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 TCEAL4Q96EI5 215 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 ZNF558Q96NG5 402 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 BTBD2Q9BX70 525 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 SGK2Q9HBY8 427 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 AKIP1Q9NQ31 210 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 CREBZFQ9NS37 354 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 HS3ST2Q9Y278 367 aa12.44□□□□□ -0.42
LDLR-207ENST00000558013 SOBPA7XYQ1 873 aa12.43□□□□□ -0.42
LDLR-207ENST00000558013 ANXA4P09525 319 aaPredicted RBP12.43□□□□□ -0.42
LDLR-207ENST00000558013 POU2F1P14859 743 aa12.43□□□□□ -0.42
LDLR-207ENST00000558013 IL1RNP18510 177 aa12.43□□□□□ -0.42
LDLR-207ENST00000558013 PRPH2P23942 346 aa12.43□□□□□ -0.42
LDLR-207ENST00000558013 HNMTP50135 292 aa12.43□□□□□ -0.42
LDLR-207ENST00000558013 CRISP3P54108 245 aa12.43□□□□□ -0.42
LDLR-207ENST00000558013 CAMK2GQ13555 558 aaPredicted RBP12.43□□□□□ -0.42
LDLR-207ENST00000558013 TRIM16LQ309B1 348 aa12.43□□□□□ -0.42
LDLR-207ENST00000558013 RFX4Q33E94 735 aa12.43□□□□□ -0.42
LDLR-207ENST00000558013 AGTRAPQ6RW13 159 aa12.43□□□□□ -0.42
LDLR-207ENST00000558013 CSGALNACT1Q8TDX6 532 aa12.43□□□□□ -0.42
LDLR-207ENST00000558013 ZNF300Q96RE9 604 aaPredicted RBP12.43□□□□□ -0.42
LDLR-207ENST00000558013 FAM83DQ9H4H8 585 aa12.43□□□□□ -0.42
LDLR-207ENST00000558013 RNF167Q9H6Y7 350 aa12.43□□□□□ -0.42
LDLR-207ENST00000558013 RUBCNLQ9H714 662 aa12.43□□□□□ -0.42
LDLR-207ENST00000558013 REEP1Q9H902 201 aa12.43□□□□□ -0.42
LDLR-207ENST00000558013 GNG14A0A1W2PPG7 69 aa12.43□□□□□ -0.42
LDLR-207ENST00000558013 PRAMEF25A6NGN4 478 aa12.43□□□□□ -0.42
LDLR-207ENST00000558013 TTC34A8MYJ7 566 aa12.43□□□□□ -0.42
LDLR-207ENST00000558013 LEFTY1O75610 366 aa12.43□□□□□ -0.42
LDLR-207ENST00000558013 ETFAP13804 333 aa12.43□□□□□ -0.42
LDLR-207ENST00000558013 MAPK1P28482 360 aa12.43□□□□□ -0.42
LDLR-207ENST00000558013 LIPAP38571 399 aa12.43□□□□□ -0.42
LDLR-207ENST00000558013 CD97P48960 835 aa12.43□□□□□ -0.42
LDLR-207ENST00000558013 TRPC1P48995 793 aa12.43□□□□□ -0.42
LDLR-207ENST00000558013 METAP1P53582 386 aa12.43□□□□□ -0.42
LDLR-207ENST00000558013 EIF3MQ7L2H7 374 aaKnown RBP12.43□□□□□ -0.42
LDLR-207ENST00000558013 GPR155Q7Z3F1 870 aa12.43□□□□□ -0.42
LDLR-207ENST00000558013 TMC8Q8IU68 726 aa12.43□□□□□ -0.42
LDLR-207ENST00000558013 ST13P5Q8NFI4 369 aaPredicted RBP12.43□□□□□ -0.42
LDLR-207ENST00000558013 OR5AK3PQ8NH89 298 aa12.43□□□□□ -0.42
LDLR-207ENST00000558013 HUS1BQ8NHY5 278 aa12.43□□□□□ -0.42
LDLR-207ENST00000558013 SPPL2AQ8TCT8 520 aa12.43□□□□□ -0.42
LDLR-207ENST00000558013 ZNF566Q969W8 418 aa12.43□□□□□ -0.42
LDLR-207ENST00000558013 TAMM41Q96BW9 452 aa12.43□□□□□ -0.42
LDLR-207ENST00000558013 DEFB118Q96PH6 123 aa12.43□□□□□ -0.42
LDLR-207ENST00000558013 INIPQ9NRY2 104 aa12.43□□□□□ -0.42
LDLR-207ENST00000558013 TMED5Q9Y3A6 229 aa12.43□□□□□ -0.42
LDLR-207ENST00000558013 KRBA1A5PL33 1030 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 J3KTA2 159 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 CCL16O15467 120 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 JRKO75564 520 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 POP4O95707 220 aaKnown RBP12.42□□□□□ -0.42
LDLR-207ENST00000558013 JUNDP17535 347 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 CRATP43155 626 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 CBX3Q13185 183 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 INAQ16352 499 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 ARSIQ5FYB1 569 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 KIAA1614Q5VZ46 1190 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 NLGN4XQ8N0W4 816 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 MMP21Q8N119 569 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 SYNPOQ8N3V7 929 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 RASGEF1AQ8N9B8 481 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 DNAJB8Q8NHS0 232 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 NEIL2Q969S2 332 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 CIDECQ96AQ7 238 aaPredicted RBP12.42□□□□□ -0.42
LDLR-207ENST00000558013 C11orf24Q96F05 449 aaPredicted RBP12.42□□□□□ -0.42
LDLR-207ENST00000558013 FEVQ99581 238 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 GABARAPL1Q9H0R8 117 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 ZBTB20Q9HC78 741 aaPredicted RBP12.42□□□□□ -0.42
LDLR-207ENST00000558013 SPATA6Q9NWH7 488 aaPredicted RBP12.42□□□□□ -0.42
LDLR-207ENST00000558013 STOX2Q9P2F5 926 aaPredicted RBP12.42□□□□□ -0.42
LDLR-207ENST00000558013 TPRKBQ9Y3C4 175 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 PCDHB11Q9Y5F2 797 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 PCDHGB1Q9Y5G3 927 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 PCDHGA6Q9Y5G7 932 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 RGS10O43665 173 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 SERPINB7O75635 380 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 CD36P16671 472 aa12.42□□□□□ -0.42
LDLR-207ENST00000558013 CDH3P22223 829 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms