RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 CYC1P08574 325 aa13.86□□□□□ -0.19
SHMT2-235ENST00000557740 HIST1H2AGP0C0S8 130 aaPredicted RBP13.86□□□□□ -0.19
SHMT2-235ENST00000557740 ICAM2P13598 275 aa13.86□□□□□ -0.19
SHMT2-235ENST00000557740 IL1RNP18510 177 aa13.86□□□□□ -0.19
SHMT2-235ENST00000557740 HIST1H2ADP20671 130 aa13.86□□□□□ -0.19
SHMT2-235ENST00000557740 CCND1P24385 295 aa13.86□□□□□ -0.19
SHMT2-235ENST00000557740 GRK3P35626 688 aa13.86□□□□□ -0.19
SHMT2-235ENST00000557740 PER3P56645 1201 aa13.86□□□□□ -0.19
SHMT2-235ENST00000557740 NAE1Q13564 534 aa13.86□□□□□ -0.19
SHMT2-235ENST00000557740 PCOLCEQ15113 449 aa13.86□□□□□ -0.19
SHMT2-235ENST00000557740 INAQ16352 499 aa13.86□□□□□ -0.19
SHMT2-235ENST00000557740 BBS9Q3SYG4 887 aa13.86□□□□□ -0.19
SHMT2-235ENST00000557740 MINDY4Q4G0A6 757 aa13.86□□□□□ -0.19
SHMT2-235ENST00000557740 SPANXN3Q5MJ09 141 aa13.86□□□□□ -0.19
SHMT2-235ENST00000557740 RPUSD3Q6P087 351 aaKnown RBP13.86□□□□□ -0.19
SHMT2-235ENST00000557740 AGTRAPQ6RW13 159 aa13.86□□□□□ -0.19
SHMT2-235ENST00000557740 KIAA0408Q6ZU52 694 aa13.86□□□□□ -0.19
SHMT2-235ENST00000557740 PCGF5Q86SE9 256 aa13.86□□□□□ -0.19
SHMT2-235ENST00000557740 ZCCHC10Q8TBK6 192 aa13.86□□□□□ -0.19
SHMT2-235ENST00000557740 PSMF1Q92530 271 aa13.86□□□□□ -0.19
SHMT2-235ENST00000557740 HIST1H2AHQ96KK5 128 aa13.86□□□□□ -0.19
SHMT2-235ENST00000557740 HIST1H2AJQ99878 128 aa13.86□□□□□ -0.19
SHMT2-235ENST00000557740 NAT9Q9BTE0 207 aa13.86□□□□□ -0.19
SHMT2-235ENST00000557740 H2AFJQ9BTM1 129 aa13.86□□□□□ -0.19
SHMT2-235ENST00000557740 TUBB6Q9BUF5 446 aa13.86□□□□□ -0.19
SHMT2-235ENST00000557740 VN1R1Q9GZP7 353 aa13.86□□□□□ -0.19
SHMT2-235ENST00000557740 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.86□□□□□ -0.19
SHMT2-235ENST00000557740 ATG10Q9H0Y0 220 aa13.86□□□□□ -0.19
SHMT2-235ENST00000557740 PLA2G3Q9NZ20 509 aa13.86□□□□□ -0.19
SHMT2-235ENST00000557740 HCN3Q9P1Z3 774 aa13.86□□□□□ -0.19
SHMT2-235ENST00000557740 C19orf25Q9UFG5 118 aaPredicted RBP13.86□□□□□ -0.19
SHMT2-235ENST00000557740 SNX12Q9UMY4 172 aa13.86□□□□□ -0.19
SHMT2-235ENST00000557740 CES2O00748 559 aa13.85□□□□□ -0.19
SHMT2-235ENST00000557740 SLC16A5O15375 505 aa13.85□□□□□ -0.19
SHMT2-235ENST00000557740 JRKO75564 520 aa13.85□□□□□ -0.19
SHMT2-235ENST00000557740 ITGAMP11215 1152 aa13.85□□□□□ -0.19
SHMT2-235ENST00000557740 CDH1P12830 882 aa13.85□□□□□ -0.19
SHMT2-235ENST00000557740 BCL6P41182 706 aa13.85□□□□□ -0.19
SHMT2-235ENST00000557740 XCR1P46094 333 aa13.85□□□□□ -0.19
SHMT2-235ENST00000557740 TNFSF10P50591 281 aa13.85□□□□□ -0.19
SHMT2-235ENST00000557740 CDKN2DP55273 166 aa13.85□□□□□ -0.19
SHMT2-235ENST00000557740 CSNK1G2P78368 415 aa13.85□□□□□ -0.19
SHMT2-235ENST00000557740 DHX9Q08211 1270 aaKnown RBP13.85□□□□□ -0.19
SHMT2-235ENST00000557740 PDAP1Q13442 181 aaKnown RBP13.85□□□□□ -0.19
SHMT2-235ENST00000557740 PHKG1Q16816 387 aa13.85□□□□□ -0.19
SHMT2-235ENST00000557740 RBM20Q5T481 1227 aaKnown RBP13.85□□□□□ -0.19
SHMT2-235ENST00000557740 ABHD17BQ5VST6 288 aa13.85□□□□□ -0.19
SHMT2-235ENST00000557740 HIBCHQ6NVY1 386 aaPredicted RBP13.85□□□□□ -0.19
SHMT2-235ENST00000557740 PAQR3Q6TCH7 311 aa13.85□□□□□ -0.19
SHMT2-235ENST00000557740 TMEM205Q6UW68 189 aa13.85□□□□□ -0.19
SHMT2-235ENST00000557740 PRSS41Q7RTY9 318 aa13.85□□□□□ -0.19
SHMT2-235ENST00000557740 ASPGQ86U10 573 aa13.85□□□□□ -0.19
SHMT2-235ENST00000557740 CNTN4Q8IWV2 1026 aa13.85□□□□□ -0.19
SHMT2-235ENST00000557740 GPATCH11Q8N954 259 aa13.85□□□□□ -0.19
SHMT2-235ENST00000557740 CERS2Q96G23 380 aa13.85□□□□□ -0.19
SHMT2-235ENST00000557740 MACROD1Q9BQ69 325 aa13.85□□□□□ -0.19
SHMT2-235ENST00000557740 SLX1AQ9BQ83 275 aa13.85□□□□□ -0.19
SHMT2-235ENST00000557740 HAUS8Q9BT25 410 aa13.85□□□□□ -0.19
SHMT2-235ENST00000557740 FAM129AQ9BZQ8 928 aa13.85□□□□□ -0.19
SHMT2-235ENST00000557740 DDX47Q9H0S4 455 aaKnown RBP13.85□□□□□ -0.19
SHMT2-235ENST00000557740 ANKHQ9HCJ1 492 aa13.85□□□□□ -0.19
SHMT2-235ENST00000557740 PPANQ9NQ55 473 aaKnown RBP13.85□□□□□ -0.19
SHMT2-235ENST00000557740 TEKT2Q9UIF3 430 aa13.85□□□□□ -0.19
SHMT2-235ENST00000557740 SH2B3Q9UQQ2 575 aa13.85□□□□□ -0.19
SHMT2-235ENST00000557740 HEATR5BQ9P2D3 2071 aa13.84□□□□□ -0.19
SHMT2-235ENST00000557740 FEZF1A0PJY2 475 aa13.84□□□□□ -0.19
SHMT2-235ENST00000557740 SGK494L7N484 410 aa13.84□□□□□ -0.19
SHMT2-235ENST00000557740 LRRTM2O43300 516 aa13.84□□□□□ -0.19
SHMT2-235ENST00000557740 SEC24DO94855 1032 aaPredicted RBP13.84□□□□□ -0.19
SHMT2-235ENST00000557740 F10P00742 488 aa13.84□□□□□ -0.19
SHMT2-235ENST00000557740 SLC35G6P0C7Q6 338 aa13.84□□□□□ -0.19
SHMT2-235ENST00000557740 IL2P60568 153 aa13.84□□□□□ -0.19
SHMT2-235ENST00000557740 SNRPNP63162 240 aaKnown RBP13.84□□□□□ -0.19
SHMT2-235ENST00000557740 TIAL1Q01085 375 aaKnown RBP eCLIP13.84□□□□□ -0.19
SHMT2-235ENST00000557740 CAPN13Q6MZZ7 669 aaPredicted RBP13.84□□□□□ -0.19
SHMT2-235ENST00000557740 TMEM214Q6NUQ4 689 aaKnown RBP13.84□□□□□ -0.19
SHMT2-235ENST00000557740 LCTLQ6UWM7 567 aa13.84□□□□□ -0.19
SHMT2-235ENST00000557740 LANCL3Q6ZV70 420 aa13.84□□□□□ -0.19
SHMT2-235ENST00000557740 PDIK1LQ8N165 341 aa13.84□□□□□ -0.19
SHMT2-235ENST00000557740 OR51Q1Q8NH59 317 aa13.84□□□□□ -0.19
SHMT2-235ENST00000557740 SUN3Q8TAQ9 357 aa13.84□□□□□ -0.19
SHMT2-235ENST00000557740 SLC13A3Q8WWT9 602 aa13.84□□□□□ -0.19
SHMT2-235ENST00000557740 HAS2Q92819 552 aa13.84□□□□□ -0.19
SHMT2-235ENST00000557740 CFAP36Q96G28 342 aa13.84□□□□□ -0.19
SHMT2-235ENST00000557740 SGPP1Q9BX95 441 aa13.84□□□□□ -0.19
SHMT2-235ENST00000557740 TRIM54Q9BYV2 358 aa13.84□□□□□ -0.19
SHMT2-235ENST00000557740 RNF32Q9H0A6 362 aa13.84□□□□□ -0.19
SHMT2-235ENST00000557740 ARL15Q9NXU5 204 aa13.84□□□□□ -0.19
SHMT2-235ENST00000557740 SVILO95425 2214 aa13.83□□□□□ -0.2
SHMT2-235ENST00000557740 RDH16O75452 317 aa13.83□□□□□ -0.2
SHMT2-235ENST00000557740 WDPCPO95876 746 aa13.83□□□□□ -0.2
SHMT2-235ENST00000557740 AHSGP02765 367 aa13.83□□□□□ -0.2
SHMT2-235ENST00000557740 MYBL2P10244 700 aa13.83□□□□□ -0.2
SHMT2-235ENST00000557740 COL8A1P27658 744 aa13.83□□□□□ -0.2
SHMT2-235ENST00000557740 GABRB3P28472 473 aa13.83□□□□□ -0.2
SHMT2-235ENST00000557740 DCTP40126 519 aa13.83□□□□□ -0.2
SHMT2-235ENST00000557740 CCR8P51685 355 aa13.83□□□□□ -0.2
SHMT2-235ENST00000557740 EFNA3P52797 238 aa13.83□□□□□ -0.2
SHMT2-235ENST00000557740 AP1S2P56377 157 aa13.83□□□□□ -0.2
SHMT2-235ENST00000557740 ZNF33BQ06732 778 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms