RNA–Protein interactions for RNA: ENST00000555221.3

CKS1BP1-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 1, humanhuman

BASIC

Gene CKS1BP1, Length 240 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP1-201ENST00000555221 OR3A3P47888 321 aa4.81□□□□□ -1.64
CKS1BP1-201ENST00000555221 CLDN17P56750 224 aa4.81□□□□□ -1.64
CKS1BP1-201ENST00000555221 AKAP17AQ02040 695 aaKnown RBP4.81□□□□□ -1.64
CKS1BP1-201ENST00000555221 C2orf76Q3KRA6 126 aa4.81□□□□□ -1.64
CKS1BP1-201ENST00000555221 FGD3Q5JSP0 725 aa4.81□□□□□ -1.64
CKS1BP1-201ENST00000555221 PODNL1Q6PEZ8 512 aa4.81□□□□□ -1.64
CKS1BP1-201ENST00000555221 PSRC1Q6PGN9 363 aaPredicted RBP4.81□□□□□ -1.64
CKS1BP1-201ENST00000555221 KCTD9Q7L273 389 aa4.81□□□□□ -1.64
CKS1BP1-201ENST00000555221 FCRLAQ7L513 359 aa4.81□□□□□ -1.64
CKS1BP1-201ENST00000555221 CPEB2Q7Z5Q1 589 aaKnown RBP4.81□□□□□ -1.64
CKS1BP1-201ENST00000555221 CUZD1Q86UP6 607 aa4.81□□□□□ -1.64
CKS1BP1-201ENST00000555221 GBP7Q8N8V2 638 aaPredicted RBP4.81□□□□□ -1.64
CKS1BP1-201ENST00000555221 LRTM2Q8N967 370 aa4.81□□□□□ -1.64
CKS1BP1-201ENST00000555221 TMEM178AQ8NBL3 297 aa4.81□□□□□ -1.64
CKS1BP1-201ENST00000555221 SPC24Q8NBT2 197 aa4.81□□□□□ -1.64
CKS1BP1-201ENST00000555221 KIAA0895Q8NCT3 520 aa4.81□□□□□ -1.64
CKS1BP1-201ENST00000555221 OR1L3Q8NH93 324 aa4.81□□□□□ -1.64
CKS1BP1-201ENST00000555221 PSMA8Q8TAA3 256 aa4.81□□□□□ -1.64
CKS1BP1-201ENST00000555221 C10orf90Q96M02 699 aa4.81□□□□□ -1.64
CKS1BP1-201ENST00000555221 F2RL3Q96RI0 385 aa4.81□□□□□ -1.64
CKS1BP1-201ENST00000555221 NKX3-1Q99801 234 aaPredicted RBP4.81□□□□□ -1.64
CKS1BP1-201ENST00000555221 C17orf62Q9BQA9 187 aa4.81□□□□□ -1.64
CKS1BP1-201ENST00000555221 CACNG6Q9BXT2 260 aa4.81□□□□□ -1.64
CKS1BP1-201ENST00000555221 MRPL9Q9BYD2 267 aaKnown RBP4.81□□□□□ -1.64
CKS1BP1-201ENST00000555221 GPR173Q9NS66 373 aa4.81□□□□□ -1.64
CKS1BP1-201ENST00000555221 EXOC1Q9NV70 894 aa4.81□□□□□ -1.64
CKS1BP1-201ENST00000555221 INTS10Q9NVR2 710 aaKnown RBP4.81□□□□□ -1.64
CKS1BP1-201ENST00000555221 TRPC4Q9UBN4 977 aa4.81□□□□□ -1.64
CKS1BP1-201ENST00000555221 ELF5Q9UKW6 265 aaPredicted RBP4.81□□□□□ -1.64
CKS1BP1-201ENST00000555221 HBS1LQ9Y450 684 aaKnown RBP4.81□□□□□ -1.64
CKS1BP1-201ENST00000555221 FAM149AA5PLN7 773 aa4.8□□□□□ -1.64
CKS1BP1-201ENST00000555221 MSGN1A6NI15 193 aa4.8□□□□□ -1.64
CKS1BP1-201ENST00000555221 TEX28O15482 410 aa4.8□□□□□ -1.64
CKS1BP1-201ENST00000555221 TTI1O43156 1089 aa4.8□□□□□ -1.64
CKS1BP1-201ENST00000555221 SCO2O43819 266 aa4.8□□□□□ -1.64
CKS1BP1-201ENST00000555221 ATP9AO75110 1047 aa4.8□□□□□ -1.64
CKS1BP1-201ENST00000555221 RTN2O75298 545 aa4.8□□□□□ -1.64
CKS1BP1-201ENST00000555221 CD48P09326 243 aa4.8□□□□□ -1.64
CKS1BP1-201ENST00000555221 SLC2A2P11168 524 aaPredicted RBP4.8□□□□□ -1.64
CKS1BP1-201ENST00000555221 KRT3P12035 628 aa4.8□□□□□ -1.64
CKS1BP1-201ENST00000555221 MAP2K2P36507 400 aa4.8□□□□□ -1.64
CKS1BP1-201ENST00000555221 HNF4AP41235 474 aa4.8□□□□□ -1.64
CKS1BP1-201ENST00000555221 OR3A1P47881 315 aa4.8□□□□□ -1.64
CKS1BP1-201ENST00000555221 EXT1Q16394 746 aa4.8□□□□□ -1.64
CKS1BP1-201ENST00000555221 KLHL10Q6JEL2 608 aa4.8□□□□□ -1.64
CKS1BP1-201ENST00000555221 FAM53AQ6NSI3 398 aaPredicted RBP4.8□□□□□ -1.64
CKS1BP1-201ENST00000555221 MEX3BQ6ZN04 569 aaKnown RBP4.8□□□□□ -1.64
CKS1BP1-201ENST00000555221 SLC24A5Q71RS6 500 aa4.8□□□□□ -1.64
CKS1BP1-201ENST00000555221 CCDC83Q8IWF9 413 aa4.8□□□□□ -1.64
CKS1BP1-201ENST00000555221 KLHDC8AQ8IYD2 350 aa4.8□□□□□ -1.64
CKS1BP1-201ENST00000555221 OR5AP2Q8NGF4 316 aa4.8□□□□□ -1.64
CKS1BP1-201ENST00000555221 APOBEC4Q8WW27 367 aaKnown RBP4.8□□□□□ -1.64
CKS1BP1-201ENST00000555221 CDKN2AIPNLQ96HQ2 116 aa4.8□□□□□ -1.64
CKS1BP1-201ENST00000555221 RBM41Q96IZ5 413 aaKnown RBP4.8□□□□□ -1.64
CKS1BP1-201ENST00000555221 PGLYRP2Q96PD5 576 aa4.8□□□□□ -1.64
CKS1BP1-201ENST00000555221 ALKBH7Q9BT30 221 aaPredicted RBP4.8□□□□□ -1.64
CKS1BP1-201ENST00000555221 IDI2Q9BXS1 227 aa4.8□□□□□ -1.64
CKS1BP1-201ENST00000555221 SLC5A7Q9GZV3 580 aa4.8□□□□□ -1.64
CKS1BP1-201ENST00000555221 ATP13A3Q9H7F0 1226 aa4.8□□□□□ -1.64
CKS1BP1-201ENST00000555221 RPF1Q9H9Y2 349 aaKnown RBP4.8□□□□□ -1.64
CKS1BP1-201ENST00000555221 RNPEPL1Q9HAU8 725 aa4.8□□□□□ -1.64
CKS1BP1-201ENST00000555221 RAB9BQ9NP90 201 aa4.8□□□□□ -1.64
CKS1BP1-201ENST00000555221 ZNF71Q9NQZ8 489 aaPredicted RBP4.8□□□□□ -1.64
CKS1BP1-201ENST00000555221 TBC1D13Q9NVG8 400 aa4.8□□□□□ -1.64
CKS1BP1-201ENST00000555221 PRDM4Q9UKN5 801 aa4.8□□□□□ -1.64
CKS1BP1-201ENST00000555221 PFASO15067 1338 aa4.79□□□□□ -1.64
CKS1BP1-201ENST00000555221 A0A087WW49 117 aa4.79□□□□□ -1.64
CKS1BP1-201ENST00000555221 A0A1W2PRV1 198 aa4.79□□□□□ -1.64
CKS1BP1-201ENST00000555221 KRTAP29-1A8MX34 341 aaPredicted RBP4.79□□□□□ -1.64
CKS1BP1-201ENST00000555221 SNURFLB1AK76 121 aa4.79□□□□□ -1.64
CKS1BP1-201ENST00000555221 GLCEO94923 617 aa4.79□□□□□ -1.64
CKS1BP1-201ENST00000555221 SEC24AO95486 1093 aa4.79□□□□□ -1.64
CKS1BP1-201ENST00000555221 DUTP33316 252 aaKnown RBP4.79□□□□□ -1.64
CKS1BP1-201ENST00000555221 CASP3P42574 277 aa4.79□□□□□ -1.64
CKS1BP1-201ENST00000555221 LBX1P52954 281 aa4.79□□□□□ -1.64
CKS1BP1-201ENST00000555221 UBXN1Q04323 297 aa4.79□□□□□ -1.64
CKS1BP1-201ENST00000555221 PPA1Q15181 289 aa4.79□□□□□ -1.64
CKS1BP1-201ENST00000555221 ZNF74Q16587 644 aa4.79□□□□□ -1.64
CKS1BP1-201ENST00000555221 ZNF876PQ49A33 203 aa4.79□□□□□ -1.64
CKS1BP1-201ENST00000555221 FFAR4Q5NUL3 377 aa4.79□□□□□ -1.64
CKS1BP1-201ENST00000555221 ZNF770Q6IQ21 691 aaPredicted RBP4.79□□□□□ -1.64
CKS1BP1-201ENST00000555221 SLC25A47Q6Q0C1 308 aa4.79□□□□□ -1.64
CKS1BP1-201ENST00000555221 TMEM270Q6UE05 265 aa4.79□□□□□ -1.64
CKS1BP1-201ENST00000555221 AQP12AQ8IXF9 295 aa4.79□□□□□ -1.64
CKS1BP1-201ENST00000555221 GPC2Q8N158 579 aa4.79□□□□□ -1.64
CKS1BP1-201ENST00000555221 RAB42Q8N4Z0 105 aa4.79□□□□□ -1.64
CKS1BP1-201ENST00000555221 OR10G8Q8NGN5 311 aa4.79□□□□□ -1.64
CKS1BP1-201ENST00000555221 ZNRF4Q8WWF5 429 aa4.79□□□□□ -1.64
CKS1BP1-201ENST00000555221 TMEM190Q8WZ59 177 aa4.79□□□□□ -1.64
CKS1BP1-201ENST00000555221 FBXO17Q96EF6 278 aa4.79□□□□□ -1.64
CKS1BP1-201ENST00000555221 CWC25Q9NXE8 425 aaPredicted RBP4.79□□□□□ -1.64
CKS1BP1-201ENST00000555221 EPHA6Q9UF33 1036 aa4.79□□□□□ -1.64
CKS1BP1-201ENST00000555221 STX8Q9UNK0 236 aa4.79□□□□□ -1.64
CKS1BP1-201ENST00000555221 PPP2R2CQ9Y2T4 447 aa4.79□□□□□ -1.64
CKS1BP1-201ENST00000555221 SNX5Q9Y5X3 404 aa4.79□□□□□ -1.64
CKS1BP1-201ENST00000555221 ZCCHC6Q5VYS8 1495 aaKnown RBP4.79□□□□□ -1.64
CKS1BP1-201ENST00000555221 KIAA1210Q9ULL0 1709 aa4.78□□□□□ -1.64
CKS1BP1-201ENST00000555221 A0A087WUV0 522 aaPredicted RBP4.78□□□□□ -1.64
CKS1BP1-201ENST00000555221 ERVV-2B6SEH9 535 aa4.78□□□□□ -1.64
CKS1BP1-201ENST00000555221 E5RGE8 158 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms