RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 ARL8BQ9NVJ2 186 aa11.96□□□□□ -0.49
SHMT2-214ENST00000554604 PNPOQ9NVS9 261 aa11.96□□□□□ -0.49
SHMT2-214ENST00000554604 GEMIN8Q9NWZ8 242 aaKnown RBP11.96□□□□□ -0.49
SHMT2-214ENST00000554604 VPS9D1Q9Y2B5 631 aa11.96□□□□□ -0.49
SHMT2-214ENST00000554604 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.96□□□□□ -0.49
SHMT2-214ENST00000554604 RAP2CQ9Y3L5 183 aa11.96□□□□□ -0.49
SHMT2-214ENST00000554604 RP1L1Q8IWN7 2480 aaPredicted RBP11.95□□□□□ -0.5
SHMT2-214ENST00000554604 HEATR5BQ9P2D3 2071 aa11.95□□□□□ -0.5
SHMT2-214ENST00000554604 CAPN14A8MX76 684 aa11.95□□□□□ -0.5
SHMT2-214ENST00000554604 SLCO1B7G3V0H7 640 aa11.95□□□□□ -0.5
SHMT2-214ENST00000554604 GPC4O75487 556 aa11.95□□□□□ -0.5
SHMT2-214ENST00000554604 CREG1O75629 220 aa11.95□□□□□ -0.5
SHMT2-214ENST00000554604 SLCO2B1O94956 709 aa11.95□□□□□ -0.5
SHMT2-214ENST00000554604 KRT16P08779 473 aa11.95□□□□□ -0.5
SHMT2-214ENST00000554604 MSL3P1P0C860 447 aa11.95□□□□□ -0.5
SHMT2-214ENST00000554604 CCDC166P0CW27 439 aa11.95□□□□□ -0.5
SHMT2-214ENST00000554604 PLA2G2AP14555 144 aa11.95□□□□□ -0.5
SHMT2-214ENST00000554604 UGT2B7P16662 529 aa11.95□□□□□ -0.5
SHMT2-214ENST00000554604 CD9P21926 228 aa11.95□□□□□ -0.5
SHMT2-214ENST00000554604 RPS3P23396 243 aaKnown RBP eCLIP11.95□□□□□ -0.56e-7■■□□□ 14.4
SHMT2-214ENST00000554604 HNRNPH1P31943 449 aaKnown RBP11.95□□□□□ -0.5
SHMT2-214ENST00000554604 RAB28P51157 221 aa11.95□□□□□ -0.5
SHMT2-214ENST00000554604 ITGA1P56199 1179 aa11.95□□□□□ -0.5
SHMT2-214ENST00000554604 KCNAB2Q13303 367 aa11.95□□□□□ -0.5
SHMT2-214ENST00000554604 CSHL1Q14406 222 aa11.95□□□□□ -0.5
SHMT2-214ENST00000554604 KIR2DS3Q14952 304 aa11.95□□□□□ -0.5
SHMT2-214ENST00000554604 FAM199XQ6PEV8 388 aaPredicted RBP11.95□□□□□ -0.5
SHMT2-214ENST00000554604 UNC5DQ6UXZ4 953 aa11.95□□□□□ -0.5
SHMT2-214ENST00000554604 TRIM73Q86UV7 250 aa11.95□□□□□ -0.5
SHMT2-214ENST00000554604 DCUN1D3Q8IWE4 304 aa11.95□□□□□ -0.5
SHMT2-214ENST00000554604 PARP9Q8IXQ6 854 aa11.95□□□□□ -0.5
SHMT2-214ENST00000554604 KIF2BQ8N4N8 673 aa11.95□□□□□ -0.5
SHMT2-214ENST00000554604 OR1L3Q8NH93 324 aa11.95□□□□□ -0.5
SHMT2-214ENST00000554604 TCTN2Q96GX1 697 aa11.95□□□□□ -0.5
SHMT2-214ENST00000554604 RILPQ96NA2 401 aa11.95□□□□□ -0.5
SHMT2-214ENST00000554604 FOPNLQ96NB1 174 aa11.95□□□□□ -0.5
SHMT2-214ENST00000554604 OR2A14Q96R47 310 aa11.95□□□□□ -0.5
SHMT2-214ENST00000554604 AARSD1Q9BTE6 412 aaKnown RBP11.95□□□□□ -0.5
SHMT2-214ENST00000554604 GPR87Q9BY21 358 aa11.95□□□□□ -0.5
SHMT2-214ENST00000554604 SLC25A18Q9H1K4 315 aa11.95□□□□□ -0.5
SHMT2-214ENST00000554604 P2RY12Q9H244 342 aa11.95□□□□□ -0.5
SHMT2-214ENST00000554604 ACTL8Q9H568 366 aa11.95□□□□□ -0.5
SHMT2-214ENST00000554604 STARD5Q9NSY2 213 aa11.95□□□□□ -0.5
SHMT2-214ENST00000554604 SPHK1Q9NYA1 384 aa11.95□□□□□ -0.5
SHMT2-214ENST00000554604 TRIM33Q9UPN9 1127 aa11.95□□□□□ -0.5
SHMT2-214ENST00000554604 CDYLQ9Y232 598 aa11.95□□□□□ -0.5
SHMT2-214ENST00000554604 POLHQ9Y253 713 aa11.95□□□□□ -0.5
SHMT2-214ENST00000554604 PCDHGA6Q9Y5G7 932 aa11.95□□□□□ -0.5
SHMT2-214ENST00000554604 A0A0J9YY10 115 aa11.94□□□□□ -0.5
SHMT2-214ENST00000554604 CDC14CA4D256 554 aa11.94□□□□□ -0.5
SHMT2-214ENST00000554604 E7EQ34 232 aa11.94□□□□□ -0.5
SHMT2-214ENST00000554604 H3BMM5 538 aa11.94□□□□□ -0.5
SHMT2-214ENST00000554604 TERTO14746 1132 aaKnown RBP11.94□□□□□ -0.5
SHMT2-214ENST00000554604 SLC28A2O43868 658 aa11.94□□□□□ -0.5
SHMT2-214ENST00000554604 TPBGLP0DKB5 382 aa11.94□□□□□ -0.5
SHMT2-214ENST00000554604 ESRRAP11474 423 aaPredicted RBP11.94□□□□□ -0.5
SHMT2-214ENST00000554604 FMO4P31512 558 aa11.94□□□□□ -0.5
SHMT2-214ENST00000554604 IDH3AP50213 366 aa11.94□□□□□ -0.5
SHMT2-214ENST00000554604 PGGT1BP53609 377 aa11.94□□□□□ -0.5
SHMT2-214ENST00000554604 CDKN2DP55273 166 aa11.94□□□□□ -0.5
SHMT2-214ENST00000554604 PRAMEF17Q5VTA0 474 aa11.94□□□□□ -0.5
SHMT2-214ENST00000554604 ZNF549Q6P9A3 640 aa11.94□□□□□ -0.5
SHMT2-214ENST00000554604 EPGNQ6UW88 154 aa11.94□□□□□ -0.5
SHMT2-214ENST00000554604 PIWIL4Q7Z3Z4 852 aaKnown RBP11.94□□□□□ -0.5
SHMT2-214ENST00000554604 MAVSQ7Z434 540 aa11.94□□□□□ -0.5
SHMT2-214ENST00000554604 SLC22A9Q8IVM8 553 aa11.94□□□□□ -0.5
SHMT2-214ENST00000554604 RAB42Q8N4Z0 105 aa11.94□□□□□ -0.5
SHMT2-214ENST00000554604 ZNF781Q8N8C0 355 aa11.94□□□□□ -0.5
SHMT2-214ENST00000554604 C19orf47Q8N9M1 422 aaKnown RBP11.94□□□□□ -0.5
SHMT2-214ENST00000554604 SLC38A9Q8NBW4 561 aa11.94□□□□□ -0.5
SHMT2-214ENST00000554604 LPGAT1Q92604 370 aa11.94□□□□□ -0.5
SHMT2-214ENST00000554604 SLC22A18Q96BI1 424 aa11.94□□□□□ -0.5
SHMT2-214ENST00000554604 CNDP1Q96KN2 507 aa11.94□□□□□ -0.5
SHMT2-214ENST00000554604 EBF4Q9BQW3 602 aa11.94□□□□□ -0.5
SHMT2-214ENST00000554604 CCDC106Q9BWC9 280 aa11.94□□□□□ -0.5
SHMT2-214ENST00000554604 AKIRIN1Q9H9L7 192 aaPredicted RBP11.94□□□□□ -0.5
SHMT2-214ENST00000554604 IRAK4Q9NWZ3 460 aa11.94□□□□□ -0.5
SHMT2-214ENST00000554604 VTI1BQ9UEU0 232 aa11.94□□□□□ -0.5
SHMT2-214ENST00000554604 CIDEBQ9UHD4 219 aa11.94□□□□□ -0.5
SHMT2-214ENST00000554604 TUBD1Q9UJT1 453 aa11.94□□□□□ -0.5
SHMT2-214ENST00000554604 CRYL1Q9Y2S2 319 aa11.94□□□□□ -0.5
SHMT2-214ENST00000554604 COMMD10Q9Y6G5 202 aa11.94□□□□□ -0.5
SHMT2-214ENST00000554604 CCDC189A1A4V9 331 aa11.93□□□□□ -0.5
SHMT2-214ENST00000554604 E5RI56 91 aa11.93□□□□□ -0.5
SHMT2-214ENST00000554604 J3QKU1 62 aa11.93□□□□□ -0.5
SHMT2-214ENST00000554604 MEN1O00255 615 aa11.93□□□□□ -0.5
SHMT2-214ENST00000554604 OR2B3O76000 313 aa11.93□□□□□ -0.5
SHMT2-214ENST00000554604 WFS1O76024 890 aa11.93□□□□□ -0.5
SHMT2-214ENST00000554604 ESR1P03372 595 aa11.93□□□□□ -0.5
SHMT2-214ENST00000554604 HBQ1P09105 142 aa11.93□□□□□ -0.5
SHMT2-214ENST00000554604 CHRM3P20309 590 aa11.93□□□□□ -0.5
SHMT2-214ENST00000554604 PKLRP30613 574 aa11.93□□□□□ -0.5
SHMT2-214ENST00000554604 RPL14P50914 215 aaKnown RBP11.93□□□□□ -0.5
SHMT2-214ENST00000554604 NAGLUP54802 743 aa11.93□□□□□ -0.5
SHMT2-214ENST00000554604 RPS18P62269 152 aaKnown RBP11.93□□□□□ -0.5
SHMT2-214ENST00000554604 NFKB2Q00653 900 aa11.93□□□□□ -0.5
SHMT2-214ENST00000554604 TIAL1Q01085 375 aaKnown RBP eCLIP11.93□□□□□ -0.5
SHMT2-214ENST00000554604 GALNT1Q10472 559 aaPredicted RBP11.93□□□□□ -0.5
SHMT2-214ENST00000554604 SNCBQ16143 134 aa11.93□□□□□ -0.5
SHMT2-214ENST00000554604 SLC5A12Q1EHB4 618 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms