RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 SGK494L7N484 410 aa12.12□□□□□ -0.47
VPS29-211ENST00000553128 NDC80O14777 642 aa12.12□□□□□ -0.47
VPS29-211ENST00000553128 HAT1O14929 419 aa12.12□□□□□ -0.47
VPS29-211ENST00000553128 CDC123O75794 336 aaPredicted RBP12.12□□□□□ -0.47
VPS29-211ENST00000553128 AVPR1BP47901 424 aa12.12□□□□□ -0.47
VPS29-211ENST00000553128 ITGA8P53708 1063 aa12.12□□□□□ -0.47
VPS29-211ENST00000553128 SLC26A5P58743 744 aa12.12□□□□□ -0.47
VPS29-211ENST00000553128 EIF3EP60228 445 aaKnown RBP12.12□□□□□ -0.47
VPS29-211ENST00000553128 FAM53BQ14153 422 aa12.12□□□□□ -0.47
VPS29-211ENST00000553128 USP10Q14694 798 aaKnown RBP12.12□□□□□ -0.47
VPS29-211ENST00000553128 ZNF425Q6IV72 752 aa12.12□□□□□ -0.47
VPS29-211ENST00000553128 TTC23LQ6PF05 361 aa12.12□□□□□ -0.47
VPS29-211ENST00000553128 DARS2Q6PI48 645 aaKnown RBP12.12□□□□□ -0.47
VPS29-211ENST00000553128 RPS19BP1Q86WX3 136 aaKnown RBP12.12□□□□□ -0.47
VPS29-211ENST00000553128 KRTAP1-3Q8IUG1 177 aa12.12□□□□□ -0.47
VPS29-211ENST00000553128 CDKL3Q8IVW4 592 aaPredicted RBP12.12□□□□□ -0.47
VPS29-211ENST00000553128 ALS2CR12Q96Q35 445 aa12.12□□□□□ -0.47
VPS29-211ENST00000553128 PLSCR2Q9NRY7 297 aa12.12□□□□□ -0.47
VPS29-211ENST00000553128 MARCH4Q9P2E8 410 aaPredicted RBP12.12□□□□□ -0.47
VPS29-211ENST00000553128 CSPG4Q6UVK1 2322 aa12.11□□□□□ -0.47
VPS29-211ENST00000553128 USP27XA6NNY8 438 aa12.11□□□□□ -0.47
VPS29-211ENST00000553128 AKR1B10O60218 316 aa12.11□□□□□ -0.47
VPS29-211ENST00000553128 INHBBP09529 407 aa12.11□□□□□ -0.47
VPS29-211ENST00000553128 ERGP11308 486 aa12.11□□□□□ -0.47
VPS29-211ENST00000553128 IL1RNP18510 177 aa12.11□□□□□ -0.47
VPS29-211ENST00000553128 ADSLP30566 484 aaPredicted RBP12.11□□□□□ -0.47
VPS29-211ENST00000553128 CYB561P49447 251 aa12.11□□□□□ -0.47
VPS29-211ENST00000553128 GPR85P60893 370 aa12.11□□□□□ -0.47
VPS29-211ENST00000553128 RHAGQ02094 409 aa12.11□□□□□ -0.47
VPS29-211ENST00000553128 TSTA3Q13630 321 aaPredicted RBP12.11□□□□□ -0.47
VPS29-211ENST00000553128 PTK6Q13882 451 aa12.11□□□□□ -0.47
VPS29-211ENST00000553128 ABRAXAS2Q15018 415 aa12.11□□□□□ -0.47
VPS29-211ENST00000553128 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.11□□□□□ -0.47
VPS29-211ENST00000553128 CCDC181Q5TID7 509 aa12.11□□□□□ -0.47
VPS29-211ENST00000553128 ARSKQ6UWY0 536 aa12.11□□□□□ -0.47
VPS29-211ENST00000553128 RAB42Q8N4Z0 105 aa12.11□□□□□ -0.47
VPS29-211ENST00000553128 PPFIBP2Q8ND30 876 aa12.11□□□□□ -0.47
VPS29-211ENST00000553128 OR5M9Q8NGP3 310 aa12.11□□□□□ -0.47
VPS29-211ENST00000553128 ELP5Q8TE02 316 aa12.11□□□□□ -0.47
VPS29-211ENST00000553128 RERGQ96A58 199 aaPredicted RBP12.11□□□□□ -0.47
VPS29-211ENST00000553128 MBD6Q96DN6 1003 aa12.11□□□□□ -0.47
VPS29-211ENST00000553128 CHP1Q99653 195 aa12.11□□□□□ -0.47
VPS29-211ENST00000553128 TRIM45Q9H8W5 580 aaPredicted RBP12.11□□□□□ -0.47
VPS29-211ENST00000553128 PNPLA3Q9NST1 481 aa12.11□□□□□ -0.47
VPS29-211ENST00000553128 CRIM1Q9NZV1 1036 aa12.11□□□□□ -0.47
VPS29-211ENST00000553128 SPATA7Q9P0W8 599 aa12.11□□□□□ -0.47
VPS29-211ENST00000553128 TAC3Q9UHF0 121 aa12.11□□□□□ -0.47
VPS29-211ENST00000553128 A0A0G2JNJ9 132 aa12.1□□□□□ -0.47
VPS29-211ENST00000553128 NPIPA2E9PIF3 369 aa12.1□□□□□ -0.47
VPS29-211ENST00000553128 NPIPA3F8WFD2 350 aa12.1□□□□□ -0.47
VPS29-211ENST00000553128 H0YIG0 161 aa12.1□□□□□ -0.47
VPS29-211ENST00000553128 PEX1O43933 1283 aa12.1□□□□□ -0.47
VPS29-211ENST00000553128 PRMT3O60678 531 aa12.1□□□□□ -0.47
VPS29-211ENST00000553128 STK10O94804 968 aaKnown RBP12.1□□□□□ -0.47
VPS29-211ENST00000553128 NSA2O95478 260 aaKnown RBP12.1□□□□□ -0.47
VPS29-211ENST00000553128 HEXAP06865 529 aa12.1□□□□□ -0.47
VPS29-211ENST00000553128 CYC1P08574 325 aa12.1□□□□□ -0.47
VPS29-211ENST00000553128 EZRP15311 586 aaKnown RBP12.1□□□□□ -0.47
VPS29-211ENST00000553128 RPA3P35244 121 aaPredicted RBP12.1□□□□□ -0.47
VPS29-211ENST00000553128 AGTR2P50052 363 aa12.1□□□□□ -0.47
VPS29-211ENST00000553128 UBASH3AP57075 661 aa12.1□□□□□ -0.47
VPS29-211ENST00000553128 MLF1P58340 268 aa12.1□□□□□ -0.47
VPS29-211ENST00000553128 TAS2R50P59544 299 aa12.1□□□□□ -0.47
VPS29-211ENST00000553128 ACTN3Q08043 901 aaPredicted RBP12.1□□□□□ -0.47
VPS29-211ENST00000553128 TMED2Q15363 201 aa12.1□□□□□ -0.47
VPS29-211ENST00000553128 NSDHLQ15738 373 aa12.1□□□□□ -0.47
VPS29-211ENST00000553128 GXYLT1Q4G148 440 aa12.1□□□□□ -0.47
VPS29-211ENST00000553128 ICE2Q659A1 982 aa12.1□□□□□ -0.47
VPS29-211ENST00000553128 AFTPHQ6ULP2 937 aa12.1□□□□□ -0.47
VPS29-211ENST00000553128 PAMR1Q6UXH9 720 aa12.1□□□□□ -0.47
VPS29-211ENST00000553128 CLEC17AQ6ZS10 378 aa12.1□□□□□ -0.47
VPS29-211ENST00000553128 CXXC5Q7LFL8 322 aaKnown RBP12.1□□□□□ -0.47
VPS29-211ENST00000553128 VN1R4Q7Z5H5 301 aa12.1□□□□□ -0.47
VPS29-211ENST00000553128 PDSS2Q86YH6 399 aa12.1□□□□□ -0.47
VPS29-211ENST00000553128 SPNS2Q8IVW8 549 aa12.1□□□□□ -0.47
VPS29-211ENST00000553128 LGI4Q8N135 537 aa12.1□□□□□ -0.47
VPS29-211ENST00000553128 POGLUT1Q8NBL1 392 aa12.1□□□□□ -0.47
VPS29-211ENST00000553128 OR52K1Q8NGK4 314 aa12.1□□□□□ -0.47
VPS29-211ENST00000553128 OR5M3Q8NGP4 307 aa12.1□□□□□ -0.47
VPS29-211ENST00000553128 OR10Q1Q8NGQ4 319 aa12.1□□□□□ -0.47
VPS29-211ENST00000553128 OR4L1Q8NH43 312 aa12.1□□□□□ -0.47
VPS29-211ENST00000553128 C16orf52Q8NHV5 167 aa12.1□□□□□ -0.47
VPS29-211ENST00000553128 NUDT8Q8WV74 236 aa12.1□□□□□ -0.47
VPS29-211ENST00000553128 LPAR4Q99677 370 aa12.1□□□□□ -0.47
VPS29-211ENST00000553128 TSSK1BQ9BXA7 367 aa12.1□□□□□ -0.47
VPS29-211ENST00000553128 DEFB127Q9H1M4 99 aa12.1□□□□□ -0.47
VPS29-211ENST00000553128 LRRC40Q9H9A6 602 aa12.1□□□□□ -0.47
VPS29-211ENST00000553128 SLC24A3Q9HC58 644 aa12.1□□□□□ -0.47
VPS29-211ENST00000553128 LANCL2Q9NS86 450 aa12.1□□□□□ -0.47
VPS29-211ENST00000553128 Q9UFV3 132 aa12.1□□□□□ -0.47
VPS29-211ENST00000553128 COL6A5A8TX70 2615 aa12.1□□□□□ -0.47
VPS29-211ENST00000553128 PHF3Q92576 2039 aaKnown RBP12.1□□□□□ -0.47
VPS29-211ENST00000553128 PJA2O43164 708 aa12.09□□□□□ -0.47
VPS29-211ENST00000553128 PHF2O75151 1096 aa12.09□□□□□ -0.47
VPS29-211ENST00000553128 RDH16O75452 317 aa12.09□□□□□ -0.47
VPS29-211ENST00000553128 ATE1O95260 518 aa12.09□□□□□ -0.47
VPS29-211ENST00000553128 LY6G6DO95868 133 aa12.09□□□□□ -0.47
VPS29-211ENST00000553128 GLI4P10075 376 aa12.09□□□□□ -0.47
VPS29-211ENST00000553128 HOXC12P31275 282 aa12.09□□□□□ -0.47
VPS29-211ENST00000553128 ADH7P40394 386 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms