RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 SPNP16150 400 aa7.75□□□□□ -1.17
PDLIM5-221ENST00000542407 HK1P19367 917 aa7.75□□□□□ -1.17
PDLIM5-221ENST00000542407 POU3F3P20264 500 aaPredicted RBP7.75□□□□□ -1.17
PDLIM5-221ENST00000542407 ZNF140P52738 457 aaPredicted RBP7.75□□□□□ -1.17
PDLIM5-221ENST00000542407 ALDH6A1Q02252 535 aaKnown RBP7.75□□□□□ -1.17
PDLIM5-221ENST00000542407 DBPQ10586 325 aaPredicted RBP7.75□□□□□ -1.17
PDLIM5-221ENST00000542407 RAPSNQ13702 412 aa7.75□□□□□ -1.17
PDLIM5-221ENST00000542407 ZNF460Q14592 562 aa7.75□□□□□ -1.17
PDLIM5-221ENST00000542407 PTPRCAPQ14761 206 aa7.75□□□□□ -1.17
PDLIM5-221ENST00000542407 PPP1R3AQ16821 1122 aa7.75□□□□□ -1.17
PDLIM5-221ENST00000542407 FAM76BQ5HYJ3 339 aa7.75□□□□□ -1.17
PDLIM5-221ENST00000542407 FAM219BQ5XKK7 198 aa7.75□□□□□ -1.17
PDLIM5-221ENST00000542407 FKBP9P1Q75LS8 142 aa7.75□□□□□ -1.17
PDLIM5-221ENST00000542407 SPNS2Q8IVW8 549 aa7.75□□□□□ -1.17
PDLIM5-221ENST00000542407 SPATA6LQ8N4H0 392 aa7.75□□□□□ -1.17
PDLIM5-221ENST00000542407 KLHL36Q8N4N3 616 aa7.75□□□□□ -1.17
PDLIM5-221ENST00000542407 HJURPQ8NCD3 748 aaPredicted RBP7.75□□□□□ -1.17
PDLIM5-221ENST00000542407 KREMEN2Q8NCW0 462 aa7.75□□□□□ -1.17
PDLIM5-221ENST00000542407 MARVELD3Q96A59 401 aa7.75□□□□□ -1.17
PDLIM5-221ENST00000542407 LRCH3Q96II8 777 aa7.75□□□□□ -1.17
PDLIM5-221ENST00000542407 SEPHS2Q99611 448 aa7.75□□□□□ -1.17
PDLIM5-221ENST00000542407 OMDQ99983 421 aa7.75□□□□□ -1.17
PDLIM5-221ENST00000542407 FEM1AQ9BSK4 669 aa7.75□□□□□ -1.17
PDLIM5-221ENST00000542407 ACPTQ9BZG2 426 aa7.75□□□□□ -1.17
PDLIM5-221ENST00000542407 CCM2LQ9NUG4 571 aaPredicted RBP7.75□□□□□ -1.17
PDLIM5-221ENST00000542407 ENPP5Q9UJA9 477 aa7.75□□□□□ -1.17
PDLIM5-221ENST00000542407 OR51F1A6NGY5 319 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 C12orf71A8MTZ7 269 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 CBX4O00257 560 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 AREL1O15033 823 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 KCNK2O95069 426 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 RASAL1O95294 804 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 S1PR4O95977 384 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 HNRNPLP14866 589 aaKnown RBP eCLIP7.74□□□□□ -1.175e-8■■■□□ 14.7
PDLIM5-221ENST00000542407 SHMT2P34897 504 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 ETV5P41161 510 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 AP1S2P56377 157 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 RAB10P61026 200 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 TIAL1Q01085 375 aaKnown RBP eCLIP7.74□□□□□ -1.174e-8■■■■□ 22.5
PDLIM5-221ENST00000542407 ILF2Q12905 390 aaKnown RBP7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 TARDBPQ13148 414 aaKnown RBP eCLIP7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 USP10Q14694 798 aaKnown RBP7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 ATP6AP1Q15904 470 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 DGUOKQ16854 277 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 AASDHQ4L235 1098 aaPredicted RBP7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 CATSPEREQ5SY80 951 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 DESI1Q6ICB0 168 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 LINGO4Q6UY18 593 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 SPATC1Q76KD6 591 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 SPRED2Q7Z698 418 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 CPXM2Q8N436 756 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 ZSCAN1Q8NBB4 408 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 GPR150Q8NGU9 434 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 DNAJB8Q8NHS0 232 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 GRPEL2Q8TAA5 225 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 LRRC20Q8TCA0 184 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 FBXW5Q969U6 566 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 VOPP1Q96AW1 172 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 LMLNQ96KR4 655 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 CAMK1GQ96NX5 476 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 TMEM246Q9BRR3 403 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 SAP130Q9H0E3 1048 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 ZNF385DQ9H6B1 395 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 C12orf49Q9H741 205 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 AGPAT4Q9NRZ5 378 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 OXSMQ9NWU1 459 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 OR6C2Q9NZP2 312 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 ZNF221Q9UK13 617 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 CLEC4EQ9ULY5 219 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 ACOT9Q9Y305 439 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 TESMINQ9Y4I5 508 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 SLC22A7Q9Y694 548 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 A0A0A6YYJ9 748 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 SLCO1B7G3V0H7 640 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 AP3D1O14617 1153 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 UBDO15205 165 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 SLC22A2O15244 555 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 MOSPD3O75425 235 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 SCO1O75880 301 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 ADH1AP07327 375 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 SNRPB2P08579 225 aaKnown RBP7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 GJA1P17302 382 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 CD40LGP29965 261 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 CSKP41240 450 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 SERPINB10P48595 397 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 EPHA5P54756 1037 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 TAS2R39P59534 338 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 SLC12A1Q13621 1099 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 DGCR6Q14129 220 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 CAPRIN1Q14444 709 aaKnown RBP7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 GTDC1Q4AE62 458 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 HES5Q5TA89 166 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 NCEH1Q6PIU2 408 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 CLEC4FQ8N1N0 589 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 MFSD4AQ8N468 514 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 ZNF321PQ8N8H1 164 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 MDGA1Q8NFP4 955 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 IFI44Q8TCB0 444 aa7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 PNPT1Q8TCS8 783 aaKnown RBP7.74□□□□□ -1.17
PDLIM5-221ENST00000542407 SH3RF2Q8TEC5 729 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms