RNA–Protein interactions for RNA: ENST00000536429.1

PRKDC-206, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 3

Gene PRKDC, Length 659 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-206	ENST00000536429	FBL	P22087	321 aa	Known RBP	12.51	□□□□□ -0.41
PRKDC-206	ENST00000536429	VARS	P26640	1264 aa	Known RBP	12.51	□□□□□ -0.41
PRKDC-206	ENST00000536429	CSRP3	P50461	194 aa		12.51	□□□□□ -0.41
PRKDC-206	ENST00000536429	CCR8	P51685	355 aa		12.51	□□□□□ -0.41
PRKDC-206	ENST00000536429	EFNA3	P52797	238 aa		12.51	□□□□□ -0.41
PRKDC-206	ENST00000536429	EMP3	P54852	163 aa		12.51	□□□□□ -0.41
PRKDC-206	ENST00000536429	ILF2	Q12905	390 aa	Known RBP	12.51	□□□□□ -0.41
PRKDC-206	ENST00000536429	UAP1	Q16222	522 aa	Predicted RBP	12.51	□□□□□ -0.41
PRKDC-206	ENST00000536429	GARNL3	Q5VVW2	1013 aa		12.51	□□□□□ -0.41
PRKDC-206	ENST00000536429	PRMT9	Q6P2P2	845 aa		12.51	□□□□□ -0.41
PRKDC-206	ENST00000536429	RAPH1	Q70E73	1250 aa		12.51	□□□□□ -0.41
PRKDC-206	ENST00000536429	LAPTM4B	Q86VI4	370 aa		12.51	□□□□□ -0.41
PRKDC-206	ENST00000536429	GPSM1	Q86YR5	675 aa		12.51	□□□□□ -0.41
PRKDC-206	ENST00000536429	RAB43	Q86YS6	212 aa		12.51	□□□□□ -0.41
PRKDC-206	ENST00000536429	MFSD9	Q8NBP5	474 aa		12.51	□□□□□ -0.41
PRKDC-206	ENST00000536429	KCT2	Q8NC54	265 aa		12.51	□□□□□ -0.41
PRKDC-206	ENST00000536429	ZCCHC10	Q8TBK6	192 aa		12.51	□□□□□ -0.41
PRKDC-206	ENST00000536429	EXT2	Q93063	718 aa		12.51	□□□□□ -0.41
PRKDC-206	ENST00000536429	TM4SF19	Q96DZ7	209 aa		12.51	□□□□□ -0.41
PRKDC-206	ENST00000536429	MMAB	Q96EY8	250 aa	Predicted RBP	12.51	□□□□□ -0.41
PRKDC-206	ENST00000536429	CYTH2	Q99418	400 aa		12.51	□□□□□ -0.41
PRKDC-206	ENST00000536429	RHOXF2	Q9BQY4	288 aa		12.51	□□□□□ -0.41
PRKDC-206	ENST00000536429	FUT8	Q9BYC5	575 aa		12.51	□□□□□ -0.41
PRKDC-206	ENST00000536429	FAM129A	Q9BZQ8	928 aa		12.51	□□□□□ -0.41
PRKDC-206	ENST00000536429	ACSS3	Q9H6R3	686 aa		12.51	□□□□□ -0.41
PRKDC-206	ENST00000536429	ALG9	Q9H6U8	611 aa		12.51	□□□□□ -0.41
PRKDC-206	ENST00000536429	WDR54	Q9H977	334 aa		12.51	□□□□□ -0.41
PRKDC-206	ENST00000536429	ACSS2	Q9NR19	701 aa		12.51	□□□□□ -0.41
PRKDC-206	ENST00000536429	P4HTM	Q9NXG6	502 aa		12.51	□□□□□ -0.41
PRKDC-206	ENST00000536429	NFU1	Q9UMS0	254 aa		12.51	□□□□□ -0.41
PRKDC-206	ENST00000536429	ASB1	Q9Y576	335 aa		12.51	□□□□□ -0.41
PRKDC-206	ENST00000536429	PCM1	Q15154	2024 aa		12.5	□□□□□ -0.41
PRKDC-206	ENST00000536429	GCN1	Q92616	2671 aa	Known RBP	12.5	□□□□□ -0.41
PRKDC-206	ENST00000536429	MKRN2OS	H3BPM6	223 aa		12.5	□□□□□ -0.41
PRKDC-206	ENST00000536429	SOCS6	O14544	535 aa		12.5	□□□□□ -0.41
PRKDC-206	ENST00000536429	OR1F1	O43749	312 aa		12.5	□□□□□ -0.41
PRKDC-206	ENST00000536429	PRAMEF4	O60810	478 aa		12.5	□□□□□ -0.41
PRKDC-206	ENST00000536429	WDR47	O94967	919 aa		12.5	□□□□□ -0.41
PRKDC-206	ENST00000536429	ZGLP1	P0C6A0	271 aa		12.5	□□□□□ -0.41
PRKDC-206	ENST00000536429	PIM1	P11309	404 aa	Predicted RBP	12.5	□□□□□ -0.41
PRKDC-206	ENST00000536429	IL1RN	P18510	177 aa		12.5	□□□□□ -0.41
PRKDC-206	ENST00000536429	SLC26A3	P40879	764 aa		12.5	□□□□□ -0.41
PRKDC-206	ENST00000536429	ATP6V0D1	P61421	351 aa		12.5	□□□□□ -0.41
PRKDC-206	ENST00000536429	REEP5	Q00765	189 aa		12.5	□□□□□ -0.41
PRKDC-206	ENST00000536429	KLC1	Q07866	573 aa		12.5	□□□□□ -0.41
PRKDC-206	ENST00000536429	RAPSN	Q13702	412 aa		12.5	□□□□□ -0.41
PRKDC-206	ENST00000536429	DSG2	Q14126	1118 aa		12.5	□□□□□ -0.41
PRKDC-206	ENST00000536429	LACTB2	Q53H82	288 aa	Predicted RBP	12.5	□□□□□ -0.41
PRKDC-206	ENST00000536429	PRAMEF9	Q5VWM5	478 aa		12.5	□□□□□ -0.41
PRKDC-206	ENST00000536429	TMEM214	Q6NUQ4	689 aa	Known RBP	12.5	□□□□□ -0.41
PRKDC-206	ENST00000536429	NXPE4	Q6UWF7	544 aa		12.5	□□□□□ -0.41
PRKDC-206	ENST00000536429	TMPRSS11B	Q86T26	416 aa		12.5	□□□□□ -0.41
PRKDC-206	ENST00000536429	ZNF605	Q86T29	641 aa		12.5	□□□□□ -0.41
PRKDC-206	ENST00000536429	ASPG	Q86U10	573 aa		12.5	□□□□□ -0.41
PRKDC-206	ENST00000536429	ISCA2	Q86U28	154 aa		12.5	□□□□□ -0.41
PRKDC-206	ENST00000536429	PDSS2	Q86YH6	399 aa		12.5	□□□□□ -0.41
PRKDC-206	ENST00000536429	KLHDC8A	Q8IYD2	350 aa		12.5	□□□□□ -0.41
PRKDC-206	ENST00000536429	CENPL	Q8N0S6	344 aa	Predicted RBP	12.5	□□□□□ -0.41
PRKDC-206	ENST00000536429	AMER2	Q8N7J2	671 aa		12.5	□□□□□ -0.41
PRKDC-206	ENST00000536429	FDCSP	Q8NFU4	85 aa		12.5	□□□□□ -0.41
PRKDC-206	ENST00000536429	OR9A4	Q8NGU2	314 aa		12.5	□□□□□ -0.41
PRKDC-206	ENST00000536429	STT3B	Q8TCJ2	826 aa		12.5	□□□□□ -0.41
PRKDC-206	ENST00000536429	KCTD4	Q8WVF5	259 aa		12.5	□□□□□ -0.41
PRKDC-206	ENST00000536429	SLC13A3	Q8WWT9	602 aa		12.5	□□□□□ -0.41
PRKDC-206	ENST00000536429	KIAA1191	Q96A73	305 aa		12.5	□□□□□ -0.41
PRKDC-206	ENST00000536429	NXNL1	Q96CM4	212 aa		12.5	□□□□□ -0.41
PRKDC-206	ENST00000536429	THAP11	Q96EK4	314 aa		12.5	□□□□□ -0.41
PRKDC-206	ENST00000536429	DRC3	Q9H069	523 aa		12.5	□□□□□ -0.41
PRKDC-206	ENST00000536429	SNX15	Q9NRS6	342 aa		12.5	□□□□□ -0.41
PRKDC-206	ENST00000536429	TRPC4	Q9UBN4	977 aa		12.5	□□□□□ -0.41
PRKDC-206	ENST00000536429	ZNF282	Q9UDV7	671 aa	Predicted RBP	12.5	□□□□□ -0.41
PRKDC-206	ENST00000536429	DYRK1B	Q9Y463	629 aa		12.5	□□□□□ -0.41
PRKDC-206	ENST00000536429	HS3ST3B1	Q9Y662	390 aa		12.5	□□□□□ -0.41
PRKDC-206	ENST00000536429	IGLV3-12	A0A075B6K2	115 aa		12.49	□□□□□ -0.41
PRKDC-206	ENST00000536429	TRBC2	A0A5B9	178 aa		12.49	□□□□□ -0.41
PRKDC-206	ENST00000536429	SGK494	L7N484	410 aa		12.49	□□□□□ -0.41
PRKDC-206	ENST00000536429	DNAJB6	O75190	326 aa		12.49	□□□□□ -0.41
PRKDC-206	ENST00000536429	JRK	O75564	520 aa		12.49	□□□□□ -0.41
PRKDC-206	ENST00000536429	CEACAM4	O75871	244 aa		12.49	□□□□□ -0.41
PRKDC-206	ENST00000536429	B3GALT4	O96024	378 aa		12.49	□□□□□ -0.41
PRKDC-206	ENST00000536429	ALDOA	P04075	364 aa	Known RBP	12.49	□□□□□ -0.41
PRKDC-206	ENST00000536429	C2	P06681	752 aa		12.49	□□□□□ -0.41
PRKDC-206	ENST00000536429	CD63	P08962	238 aa		12.49	□□□□□ -0.41
PRKDC-206	ENST00000536429	FAM153B	P0C7A2	387 aa		12.49	□□□□□ -0.41
PRKDC-206	ENST00000536429	TFEB	P19484	476 aa		12.49	□□□□□ -0.41
PRKDC-206	ENST00000536429	MMP11	P24347	488 aa		12.49	□□□□□ -0.41
PRKDC-206	ENST00000536429	CRABP2	P29373	138 aa		12.49	□□□□□ -0.41
PRKDC-206	ENST00000536429	PHB	P35232	272 aa		12.49	□□□□□ -0.41
PRKDC-206	ENST00000536429	GRK3	P35626	688 aa		12.49	□□□□□ -0.41
PRKDC-206	ENST00000536429	SCTR	P47872	440 aa		12.49	□□□□□ -0.41
PRKDC-206	ENST00000536429	HSPA7	P48741	367 aa		12.49	□□□□□ -0.41
PRKDC-206	ENST00000536429	HNMT	P50135	292 aa		12.49	□□□□□ -0.41
PRKDC-206	ENST00000536429	FAM53B	Q14153	422 aa		12.49	□□□□□ -0.41
PRKDC-206	ENST00000536429	FAM153C	Q494X1	144 aa		12.49	□□□□□ -0.41
PRKDC-206	ENST00000536429	DCAF10	Q5QP82	559 aa		12.49	□□□□□ -0.41
PRKDC-206	ENST00000536429	TCTN3	Q6NUS6	607 aa		12.49	□□□□□ -0.41
PRKDC-206	ENST00000536429	KIRREL2	Q6UWL6	708 aa		12.49	□□□□□ -0.41
PRKDC-206	ENST00000536429	PRICKLE2	Q7Z3G6	844 aa		12.49	□□□□□ -0.41
PRKDC-206	ENST00000536429	ZC3H7A	Q8IWR0	971 aa	Known RBP	12.49	□□□□□ -0.41
PRKDC-206	ENST00000536429	GSPT2	Q8IYD1	628 aa	Known RBP	12.49	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms