RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 TTC27Q6P3X3 843 aa2.41□□□□□ -2.02
CD44-238ENST00000534296 NOTUMQ6P988 496 aa2.41□□□□□ -2.02
CD44-238ENST00000534296 TRAT1Q6PIZ9 186 aa2.41□□□□□ -2.02
CD44-238ENST00000534296 DCLRE1AQ6PJP8 1040 aa2.41□□□□□ -2.02
CD44-238ENST00000534296 DOK6Q6PKX4 331 aa2.41□□□□□ -2.02
CD44-238ENST00000534296 UNC45BQ8IWX7 931 aa2.41□□□□□ -2.02
CD44-238ENST00000534296 TUSC5Q8IXB3 177 aa2.41□□□□□ -2.02
CD44-238ENST00000534296 NUP93Q8N1F7 819 aa2.41□□□□□ -2.02
CD44-238ENST00000534296 ZNF843Q8N446 348 aa2.41□□□□□ -2.02
CD44-238ENST00000534296 ATAD1Q8NBU5 361 aa2.41□□□□□ -2.02
CD44-238ENST00000534296 OR7A2PQ8NGA2 310 aa2.41□□□□□ -2.02
CD44-238ENST00000534296 SMAP2Q8WU79 429 aaPredicted RBP2.41□□□□□ -2.02
CD44-238ENST00000534296 FAM20AQ96MK3 541 aa2.41□□□□□ -2.02
CD44-238ENST00000534296 CCDC43Q96MW1 224 aaKnown RBP2.41□□□□□ -2.02
CD44-238ENST00000534296 GPATCH1Q9BRR8 931 aaKnown RBP2.41□□□□□ -2.02
CD44-238ENST00000534296 UTP14AQ9BVJ6 771 aaKnown RBP2.41□□□□□ -2.02
CD44-238ENST00000534296 SLC2A11Q9BYW1 496 aa2.41□□□□□ -2.02
CD44-238ENST00000534296 DNAI2Q9GZS0 605 aa2.41□□□□□ -2.02
CD44-238ENST00000534296 SDCBP2Q9H190 292 aa2.41□□□□□ -2.02
CD44-238ENST00000534296 RIMS4Q9H426 269 aaPredicted RBP2.41□□□□□ -2.02
CD44-238ENST00000534296 ST6GALNAC4Q9H4F1 302 aa2.41□□□□□ -2.02
CD44-238ENST00000534296 MINDY3Q9H8M7 445 aa2.41□□□□□ -2.02
CD44-238ENST00000534296 PANK3Q9H999 370 aa2.41□□□□□ -2.02
CD44-238ENST00000534296 Q9N2K0 584 aa2.41□□□□□ -2.02
CD44-238ENST00000534296 ABCB8Q9NUT2 735 aa2.41□□□□□ -2.02
CD44-238ENST00000534296 EXOC1Q9NV70 894 aa2.41□□□□□ -2.02
CD44-238ENST00000534296 TMOD3Q9NYL9 352 aa2.41□□□□□ -2.02
CD44-238ENST00000534296 WDR83OSQ9Y284 106 aa2.41□□□□□ -2.02
CD44-238ENST00000534296 A0A087WV48 116 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 C2orf92A0A1B0GVN3 265 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 C15orf61A6NNL5 157 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 TMEM150CB9EJG8 249 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 KBTBD13C9JR72 458 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 O00370 1275 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 FLRT2O43155 660 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 CRLF1O75462 422 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 ZFAND5O76080 213 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 MOCS2O96007 188 aaPredicted RBP2.4□□□□□ -2.03
CD44-238ENST00000534296 FAM58BPP0C7Q3 252 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 CYP11B2P19099 503 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 HLA-FP30511 346 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 SSTR1P30872 391 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 TLX1P31314 330 aaPredicted RBP2.4□□□□□ -2.03
CD44-238ENST00000534296 MFAP3P55082 362 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 HNRNPKP61978 463 aaKnown RBP eCLIP2.4□□□□□ -2.03
CD44-238ENST00000534296 CETN1Q12798 172 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 TAF10Q12962 218 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 TNK1Q13470 666 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 DRP2Q13474 957 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 SQLEQ14534 574 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 FASTKD3Q14CZ7 662 aaKnown RBP2.4□□□□□ -2.03
CD44-238ENST00000534296 PTGISQ16647 500 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 LACTB2Q53H82 288 aaPredicted RBP2.4□□□□□ -2.03
CD44-238ENST00000534296 TAF1BQ53T94 588 aaPredicted RBP2.4□□□□□ -2.03
CD44-238ENST00000534296 LCE1FQ5T754 118 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 SUSD1Q6UWL2 747 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 FCRLAQ7L513 359 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 FAM219AQ8IW50 185 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 CLYBLQ8N0X4 340 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 C10orf53Q8N6V4 93 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 NHLRC2Q8NBF2 726 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 SLC37A3Q8NCC5 494 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 OR2L2Q8NH16 312 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 ZNF519Q8TB69 540 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 PIGBQ92521 554 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 RAD54LQ92698 747 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 DNASE1L2Q92874 299 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 SLCO2A1Q92959 643 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 SPATA33Q96N06 139 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 INTS14Q96SY0 518 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 PIGQQ9BRB3 760 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 DCTN5Q9BTE1 182 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 LRRC61Q9BV99 259 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 IDI2Q9BXS1 227 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 OR2B2Q9GZK3 357 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 LSG1Q9H089 658 aaKnown RBP2.4□□□□□ -2.03
CD44-238ENST00000534296 MMADHCQ9H3L0 296 aaPredicted RBP2.4□□□□□ -2.03
CD44-238ENST00000534296 ATP13A3Q9H7F0 1226 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 MED20Q9H944 212 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 SPHK2Q9NRA0 654 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 TMEM181Q9P2C4 612 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 LEF1Q9UJU2 399 aaPredicted RBP2.4□□□□□ -2.03
CD44-238ENST00000534296 FBXL5Q9UKA1 691 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 NCKAP1Q9Y2A7 1128 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 ZFP37Q9Y6Q3 630 aaPredicted RBP2.4□□□□□ -2.03
CD44-238ENST00000534296 IL16Q14005 1332 aa2.4□□□□□ -2.03
CD44-238ENST00000534296 IQCMA0A1B0GVH7 501 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 FEZF1A0PJY2 475 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 MSGN1A6NI15 193 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 KRTAP16-1A8MUX0 517 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 F8VVB4 439 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 F8VWA3 439 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 H0YAE9 185 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 SLC33A1O00400 549 aaPredicted RBP2.39□□□□□ -2.03
CD44-238ENST00000534296 ZNF263O14978 683 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 TGDSO95455 350 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 SEC24AO95486 1093 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 CLDN1O95832 211 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 VTNP04004 478 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 SERPING1P05155 500 aa2.39□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms