RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 TMEM8AQ9HCN3 771 aa5.34□□□□□ -1.55
CD44-236ENST00000533222 TCF7L1Q9HCS4 588 aa5.34□□□□□ -1.55
CD44-236ENST00000533222 ADAP2Q9NPF8 381 aa5.34□□□□□ -1.55
CD44-236ENST00000533222 SACM1LQ9NTJ5 587 aa5.34□□□□□ -1.55
CD44-236ENST00000533222 KLHL11Q9NVR0 708 aa5.34□□□□□ -1.55
CD44-236ENST00000533222 BABAM2Q9NXR7 383 aa5.34□□□□□ -1.55
CD44-236ENST00000533222 KLHL28Q9NXS3 571 aa5.34□□□□□ -1.55
CD44-236ENST00000533222 OBP2AQ9NY56 170 aa5.34□□□□□ -1.55
CD44-236ENST00000533222 TAS2R10Q9NYW0 307 aa5.34□□□□□ -1.55
CD44-236ENST00000533222 PLA2G3Q9NZ20 509 aa5.34□□□□□ -1.55
CD44-236ENST00000533222 DNAJB9Q9UBS3 223 aa5.34□□□□□ -1.55
CD44-236ENST00000533222 VPS28Q9UK41 221 aa5.34□□□□□ -1.55
CD44-236ENST00000533222 ITGA11Q9UKX5 1188 aa5.34□□□□□ -1.55
CD44-236ENST00000533222 MGAT4AQ9UM21 535 aa5.34□□□□□ -1.55
CD44-236ENST00000533222 JAG2Q9Y219 1238 aa5.34□□□□□ -1.55
CD44-236ENST00000533222 PCDHB7Q9Y5E2 793 aa5.34□□□□□ -1.55
CD44-236ENST00000533222 PCDHA10Q9Y5I2 948 aa5.34□□□□□ -1.55
CD44-236ENST00000533222 PREX1Q8TCU6 1659 aa5.34□□□□□ -1.56
CD44-236ENST00000533222 GLI2P10070 1586 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 NFAT5O94916 1531 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 CNTNAP2Q9UHC6 1331 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 GNG14A0A1W2PPG7 69 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 PDZK1P1A8MUH7 402 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 HACD1B0YJ81 288 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 PATE3B3GLJ2 98 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 B4E171 279 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 E9PI62 339 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 H7C2Y5 167 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 SH2B2O14492 632 aaPredicted RBP5.33□□□□□ -1.56
CD44-236ENST00000533222 COPEO14579 308 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 NRP1O14786 923 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 ATP2A1O14983 1001 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 NUPL2O15504 423 aaKnown RBP5.33□□□□□ -1.56
CD44-236ENST00000533222 PRPF4O43172 522 aaKnown RBP eCLIP5.33□□□□□ -1.56
CD44-236ENST00000533222 VEGFDO43915 354 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 EDF1O60869 148 aaKnown RBP5.33□□□□□ -1.56
CD44-236ENST00000533222 GPX5O75715 221 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 RECQL4O94761 1208 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 VAPBO95292 243 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 CPNE6O95741 557 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 EPOP01588 193 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 AMY1AP04745 511 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 ENO1P06733 434 aaKnown RBP5.33□□□□□ -1.56
CD44-236ENST00000533222 SNRNP70P08621 437 aaKnown RBP5.33□□□□□ -1.56
CD44-236ENST00000533222 HOXC4P09017 264 aaPredicted RBP5.33□□□□□ -1.56
CD44-236ENST00000533222 PSMC3P17980 439 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 CYP2B6P20813 491 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 CYP2A7P20853 494 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 CA5AP35218 305 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 PTPN7P35236 360 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 PPM1AP35813 382 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 CRATP43155 626 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 NR4A2P43354 598 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 MAGEA6P43360 314 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 ALDH7A1P49419 539 aaKnown RBP5.33□□□□□ -1.56
CD44-236ENST00000533222 GMPSP49915 693 aaPredicted RBP5.33□□□□□ -1.56
CD44-236ENST00000533222 CCR5P51681 352 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 CCR9P51686 369 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 CAPZA1P52907 286 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 SLC16A1P53985 500 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 SOX8P57073 446 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 VAMP2P63027 116 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 REEP5Q00765 189 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 GAD2Q05329 585 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 SLC3A1Q07837 685 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 DSC1Q08554 894 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 CD300CQ08708 224 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 EPS8Q12929 822 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 ILKQ13418 452 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 ZNF267Q14586 743 aaPredicted RBP5.33□□□□□ -1.56
CD44-236ENST00000533222 DRAP1Q14919 205 aaPredicted RBP5.33□□□□□ -1.56
CD44-236ENST00000533222 SEC23BQ15437 767 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 TRIP13Q15645 432 aaPredicted RBP5.33□□□□□ -1.56
CD44-236ENST00000533222 DUSP6Q16828 381 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 BTBD16Q32M84 506 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 NKAIN1Q4KMZ8 207 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 SFT2D3Q587I9 215 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 HSP90AA4PQ58FG1 418 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 COLEC12Q5KU26 742 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 CDKL4Q5MAI5 379 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 PDZK1Q5T2W1 519 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 ATPAF1Q5TC12 328 aaPredicted RBP5.33□□□□□ -1.56
CD44-236ENST00000533222 ANKS6Q68DC2 871 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 RPL13AP3Q6NVV1 102 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 JMJD6Q6NYC1 403 aaPredicted RBP5.33□□□□□ -1.56
CD44-236ENST00000533222 RFX8Q6ZV50 586 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 BBS12Q6ZW61 710 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 SLC26A9Q7LBE3 791 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 PRSS48Q7RTY5 328 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 ZSCAN2Q7Z7L9 614 aaPredicted RBP5.33□□□□□ -1.56
CD44-236ENST00000533222 GALNT10Q86SR1 603 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 AACSQ86V21 672 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 IQCHQ86VS3 1027 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 CARM1Q86X55 608 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 XYLT1Q86Y38 959 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 RHOT1Q8IXI2 618 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 KLHL7Q8IXQ5 586 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 CCDC105Q8IYK2 499 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 UBQLNLQ8IYU4 475 aa5.33□□□□□ -1.56
CD44-236ENST00000533222 ADGRF4Q8IZF3 695 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms