RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 ANAPC2Q9UJX6 822 aa3.68□□□□□ -1.82
CD44-235ENST00000532339 ISY1Q9ULR0 285 aaKnown RBP3.68□□□□□ -1.82
CD44-235ENST00000532339 CDC14AQ9UNH5 594 aa3.68□□□□□ -1.82
CD44-235ENST00000532339 NFE2L3Q9Y4A8 694 aa3.68□□□□□ -1.82
CD44-235ENST00000532339 PCDHGA1Q9Y5H4 931 aa3.68□□□□□ -1.82
CD44-235ENST00000532339 MAU2Q9Y6X3 613 aa3.68□□□□□ -1.82
CD44-235ENST00000532339 THADAQ6YHU6 1953 aa3.68□□□□□ -1.82
CD44-235ENST00000532339 FLNAP21333 2647 aaKnown RBP3.68□□□□□ -1.82
CD44-235ENST00000532339 GON4LQ3T8J9 2241 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 A0A0G2JPF8 293 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 ESYT2A0FGR8 921 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 TMEM202A6NGA9 273 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 HNRNPCL3B7ZW38 293 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 CCER2I3L3R5 266 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 P2RY10O00398 339 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 ADAMDEC1O15204 470 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 MITFO75030 526 aaPredicted RBP3.67□□□□□ -1.82
CD44-235ENST00000532339 SIX3O95343 332 aaPredicted RBP3.67□□□□□ -1.82
CD44-235ENST00000532339 RNF224P0DH78 156 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 HNRNPCL4P0DMR1 293 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 HNRNPH1P31943 449 aaKnown RBP3.67□□□□□ -1.82
CD44-235ENST00000532339 STX2P32856 288 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 TAS2R40P59535 323 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 SNAP25P60880 206 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 TFAP4Q01664 338 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 ROR1Q01973 937 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 DMP1Q13316 513 aaPredicted RBP3.67□□□□□ -1.82
CD44-235ENST00000532339 ITGADQ13349 1161 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 NEDD9Q14511 834 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 DMC1Q14565 340 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 NAB2Q15742 525 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 KYNUQ16719 465 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 TWISTNBQ3B726 338 aaPredicted RBP3.67□□□□□ -1.82
CD44-235ENST00000532339 ALDH1L2Q3SY69 923 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 FAM78AQ5JUQ0 283 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 PPM1LQ5SGD2 360 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 MARCH8Q5T0T0 291 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 ERMARDQ5T6L9 678 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 LIN9Q5TKA1 542 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 ADALQ6DHV7 355 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 DPPA4Q7L190 304 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 PLPPR4Q7Z2D5 763 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 AACSQ86V21 672 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 ECHDC2Q86YB7 292 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 MFSD6LQ8IWD5 586 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 HACE1Q8IYU2 909 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 FAM9BQ8IZU0 186 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 LSMEM2Q8N112 164 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 TSTD1Q8NFU3 115 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 ERGIC1Q969X5 290 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 TMEM19Q96HH6 336 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 CNDP2Q96KP4 475 aaKnown RBP3.67□□□□□ -1.82
CD44-235ENST00000532339 CNOT6LQ96LI5 555 aaKnown RBP3.67□□□□□ -1.82
CD44-235ENST00000532339 MBOAT7Q96N66 472 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 GCNAQ96QF7 691 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 FNBP1Q96RU3 617 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 PAFAH2Q99487 392 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 OR10A4Q9H209 315 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 HRH4Q9H3N8 390 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 ESRP2Q9H6T0 727 aaKnown RBP3.67□□□□□ -1.82
CD44-235ENST00000532339 MKKSQ9NPJ1 570 aaPredicted RBP3.67□□□□□ -1.82
CD44-235ENST00000532339 CCDC177Q9NQR7 707 aaPredicted RBP3.67□□□□□ -1.82
CD44-235ENST00000532339 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP3.67□□□□□ -1.82
CD44-235ENST00000532339 CWC15Q9P013 229 aaKnown RBP3.67□□□□□ -1.82
CD44-235ENST00000532339 BCCIPQ9P287 314 aaKnown RBP eCLIP3.67□□□□□ -1.82
CD44-235ENST00000532339 C5AR2Q9P296 337 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 CPSF2Q9P2I0 782 aaKnown RBP3.67□□□□□ -1.82
CD44-235ENST00000532339 CMAHPQ9Y471 501 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 STON1Q9Y6Q2 735 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 UBE4BO95155 1302 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 WDR19Q8NEZ3 1342 aa3.67□□□□□ -1.82
CD44-235ENST00000532339 C1orf226A1L170 272 aa3.66□□□□□ -1.82
CD44-235ENST00000532339 TSPY2A6NKD2 308 aa3.66□□□□□ -1.82
CD44-235ENST00000532339 VCYO14598 125 aa3.66□□□□□ -1.82
CD44-235ENST00000532339 CHADO15335 359 aa3.66□□□□□ -1.82
CD44-235ENST00000532339 MID1O15344 667 aa3.66□□□□□ -1.82
CD44-235ENST00000532339 CCL16O15467 120 aa3.66□□□□□ -1.82
CD44-235ENST00000532339 FGF17O60258 216 aa3.66□□□□□ -1.82
CD44-235ENST00000532339 NDUFS7O75251 213 aa3.66□□□□□ -1.82
CD44-235ENST00000532339 CLDN1O95832 211 aa3.66□□□□□ -1.82
CD44-235ENST00000532339 ATP1A1P05023 1023 aaKnown RBP3.66□□□□□ -1.82
CD44-235ENST00000532339 APOA4P06727 396 aa3.66□□□□□ -1.82
CD44-235ENST00000532339 TSPY3P0CV98 308 aa3.66□□□□□ -1.82
CD44-235ENST00000532339 TSPY8P0CW00 308 aa3.66□□□□□ -1.82
CD44-235ENST00000532339 TRIM21P19474 475 aaKnown RBP3.66□□□□□ -1.82
CD44-235ENST00000532339 ANXA7P20073 488 aaKnown RBP3.66□□□□□ -1.82
CD44-235ENST00000532339 UBA1P22314 1058 aaKnown RBP3.66□□□□□ -1.82
CD44-235ENST00000532339 P2RY2P41231 377 aa3.66□□□□□ -1.82
CD44-235ENST00000532339 SLC1A4P43007 532 aa3.66□□□□□ -1.82
CD44-235ENST00000532339 SLC11A1P49279 550 aa3.66□□□□□ -1.82
CD44-235ENST00000532339 ERVPABLB-1P60509 514 aa3.66□□□□□ -1.82
CD44-235ENST00000532339 MRPS34P82930 218 aaKnown RBP3.66□□□□□ -1.82
CD44-235ENST00000532339 ZBED6P86452 979 aa3.66□□□□□ -1.82
CD44-235ENST00000532339 TSPY1Q01534 308 aa3.66□□□□□ -1.82
CD44-235ENST00000532339 PSMD6Q15008 389 aa3.66□□□□□ -1.82
CD44-235ENST00000532339 EFNB3Q15768 340 aa3.66□□□□□ -1.82
CD44-235ENST00000532339 C1QTNF12Q5T7M4 302 aa3.66□□□□□ -1.82
CD44-235ENST00000532339 C12orf60Q5U649 245 aa3.66□□□□□ -1.82
CD44-235ENST00000532339 KRT79Q5XKE5 535 aa3.66□□□□□ -1.82
CD44-235ENST00000532339 TMEM198Q66K66 360 aa3.66□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms