RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 APOBEC4Q8WW27 367 aaKnown RBP3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 CKAP2Q8WWK9 683 aa3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 ARHGAP45Q92619 1136 aa3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 PTP4A1Q93096 173 aa3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 SNRNP40Q96DI7 357 aaKnown RBP3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 PRAC1Q96KF2 57 aa3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 TSSK2Q96PF2 358 aa3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 ATG101Q9BSB4 218 aa3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 NACAP1Q9BZK3 213 aa3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 ZNF350Q9GZX5 532 aa3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 IARS2Q9NSE4 1012 aaKnown RBP3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 CNIH4Q9P003 139 aa3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 SLC12A6Q9UHW9 1150 aa3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 PRDM4Q9UKN5 801 aa3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 GPR132Q9UNW8 380 aa3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 AGTPBP1Q9UPW5 1226 aa3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 PPP2R2CQ9Y2T4 447 aa3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 HBS1LQ9Y450 684 aaKnown RBP3.6□□□□□ -1.83
HMGB1P28-201ENST00000507778 A0A087WW49 117 aa3.59□□□□□ -1.83
HMGB1P28-201ENST00000507778 A0A0B4J203 849 aa3.59□□□□□ -1.83
HMGB1P28-201ENST00000507778 SLCO1B7G3V0H7 640 aa3.59□□□□□ -1.83
HMGB1P28-201ENST00000507778 TEX28O15482 410 aa3.59□□□□□ -1.83
HMGB1P28-201ENST00000507778 RAF1P04049 648 aa3.59□□□□□ -1.83
HMGB1P28-201ENST00000507778 DLATP10515 647 aaKnown RBP3.59□□□□□ -1.83
HMGB1P28-201ENST00000507778 CD59P13987 128 aa3.59□□□□□ -1.83
HMGB1P28-201ENST00000507778 GNB3P16520 340 aa3.59□□□□□ -1.83
HMGB1P28-201ENST00000507778 CYP2A7P20853 494 aa3.59□□□□□ -1.83
HMGB1P28-201ENST00000507778 ELAVL4P26378 380 aaKnown RBP3.59□□□□□ -1.83
HMGB1P28-201ENST00000507778 ZNF74Q16587 644 aa3.59□□□□□ -1.83
HMGB1P28-201ENST00000507778 PODNL1Q6PEZ8 512 aa3.59□□□□□ -1.83
HMGB1P28-201ENST00000507778 SLC25A47Q6Q0C1 308 aa3.59□□□□□ -1.83
HMGB1P28-201ENST00000507778 SLC24A5Q71RS6 500 aa3.59□□□□□ -1.83
HMGB1P28-201ENST00000507778 LACC1Q8IV20 430 aa3.59□□□□□ -1.83
HMGB1P28-201ENST00000507778 KLHDC8BQ8IXV7 354 aa3.59□□□□□ -1.83
HMGB1P28-201ENST00000507778 GPC2Q8N158 579 aa3.59□□□□□ -1.83
HMGB1P28-201ENST00000507778 GOLGA6L2Q8N9W4 650 aaPredicted RBP3.59□□□□□ -1.83
HMGB1P28-201ENST00000507778 KIAA0895Q8NCT3 520 aa3.59□□□□□ -1.83
HMGB1P28-201ENST00000507778 OR5AP2Q8NGF4 316 aa3.59□□□□□ -1.83
HMGB1P28-201ENST00000507778 OR10G8Q8NGN5 311 aa3.59□□□□□ -1.83
HMGB1P28-201ENST00000507778 LGALS12Q96DT0 336 aa3.59□□□□□ -1.83
HMGB1P28-201ENST00000507778 RBM41Q96IZ5 413 aaKnown RBP3.59□□□□□ -1.83
HMGB1P28-201ENST00000507778 DUX3Q96PT4 197 aa3.59□□□□□ -1.83
HMGB1P28-201ENST00000507778 ALKBH7Q9BT30 221 aaPredicted RBP3.59□□□□□ -1.83
HMGB1P28-201ENST00000507778 FUCA2Q9BTY2 467 aa3.59□□□□□ -1.83
HMGB1P28-201ENST00000507778 P2RY12Q9H244 342 aa3.59□□□□□ -1.83
HMGB1P28-201ENST00000507778 EPHA6Q9UF33 1036 aa3.59□□□□□ -1.83
HMGB1P28-201ENST00000507778 NOCTQ9UK39 431 aaKnown RBP3.59□□□□□ -1.83
HMGB1P28-201ENST00000507778 A0A087WUV0 522 aaPredicted RBP3.58□□□□□ -1.84
HMGB1P28-201ENST00000507778 PRR23AA6NEV1 266 aa3.58□□□□□ -1.84
HMGB1P28-201ENST00000507778 PRR23D1E9PI22 279 aaPredicted RBP3.58□□□□□ -1.84
HMGB1P28-201ENST00000507778 NME6O75414 186 aaPredicted RBP3.58□□□□□ -1.84
HMGB1P28-201ENST00000507778 KHDRBS3O75525 346 aaKnown RBP3.58□□□□□ -1.84
HMGB1P28-201ENST00000507778 GOSR1O95249 250 aa3.58□□□□□ -1.84
HMGB1P28-201ENST00000507778 SEC24AO95486 1093 aa3.58□□□□□ -1.84
HMGB1P28-201ENST00000507778 PRR23D2P0DMB1 279 aaPredicted RBP3.58□□□□□ -1.84
HMGB1P28-201ENST00000507778 CEBPBP17676 345 aa3.58□□□□□ -1.84
HMGB1P28-201ENST00000507778 OR3A1P47881 315 aa3.58□□□□□ -1.84
HMGB1P28-201ENST00000507778 CLDN17P56750 224 aa3.58□□□□□ -1.84
HMGB1P28-201ENST00000507778 GNB1P62873 340 aa3.58□□□□□ -1.84
HMGB1P28-201ENST00000507778 AKAP17AQ02040 695 aaKnown RBP3.58□□□□□ -1.84
HMGB1P28-201ENST00000507778 CETN1Q12798 172 aa3.58□□□□□ -1.84
HMGB1P28-201ENST00000507778 ABRQ12979 859 aa3.58□□□□□ -1.84
HMGB1P28-201ENST00000507778 PTPN14Q15678 1187 aa3.58□□□□□ -1.84
HMGB1P28-201ENST00000507778 FUT11Q495W5 492 aa3.58□□□□□ -1.84
HMGB1P28-201ENST00000507778 ZNF542PQ5EBM4 170 aa3.58□□□□□ -1.84
HMGB1P28-201ENST00000507778 FGD3Q5JSP0 725 aa3.58□□□□□ -1.84
HMGB1P28-201ENST00000507778 ARHGAP17Q68EM7 881 aa3.58□□□□□ -1.84
HMGB1P28-201ENST00000507778 FCRLAQ7L513 359 aa3.58□□□□□ -1.84
HMGB1P28-201ENST00000507778 SIAH3Q8IW03 269 aa3.58□□□□□ -1.84
HMGB1P28-201ENST00000507778 RAB42Q8N4Z0 105 aa3.58□□□□□ -1.84
HMGB1P28-201ENST00000507778 MSANTD4Q8NCY6 345 aa3.58□□□□□ -1.84
HMGB1P28-201ENST00000507778 DDHD1Q8NEL9 900 aa3.58□□□□□ -1.84
HMGB1P28-201ENST00000507778 MRGPRDQ8TDS7 321 aa3.58□□□□□ -1.84
HMGB1P28-201ENST00000507778 MAGED4Q96JG8 741 aa3.58□□□□□ -1.84
HMGB1P28-201ENST00000507778 LRR1Q96L50 414 aa3.58□□□□□ -1.84
HMGB1P28-201ENST00000507778 CCDC43Q96MW1 224 aaKnown RBP3.58□□□□□ -1.84
HMGB1P28-201ENST00000507778 NECTIN4Q96NY8 510 aa3.58□□□□□ -1.84
HMGB1P28-201ENST00000507778 C17orf62Q9BQA9 187 aa3.58□□□□□ -1.84
HMGB1P28-201ENST00000507778 PIGQQ9BRB3 760 aa3.58□□□□□ -1.84
HMGB1P28-201ENST00000507778 IDI2Q9BXS1 227 aa3.58□□□□□ -1.84
HMGB1P28-201ENST00000507778 NYXQ9GZU5 481 aa3.58□□□□□ -1.84
HMGB1P28-201ENST00000507778 EGLN3Q9H6Z9 239 aa3.58□□□□□ -1.84
HMGB1P28-201ENST00000507778 RPF1Q9H9Y2 349 aaKnown RBP3.58□□□□□ -1.84
HMGB1P28-201ENST00000507778 MAN2C1Q9NTJ4 1040 aa3.58□□□□□ -1.84
HMGB1P28-201ENST00000507778 TBC1D13Q9NVG8 400 aa3.58□□□□□ -1.84
HMGB1P28-201ENST00000507778 CWC25Q9NXE8 425 aaPredicted RBP3.58□□□□□ -1.84
HMGB1P28-201ENST00000507778 MTRRQ9UBK8 725 aa3.58□□□□□ -1.84
HMGB1P28-201ENST00000507778 ELF5Q9UKW6 265 aaPredicted RBP3.58□□□□□ -1.84
HMGB1P28-201ENST00000507778 ITM2BQ9Y287 266 aa3.58□□□□□ -1.84
HMGB1P28-201ENST00000507778 WDR37Q9Y2I8 494 aa3.58□□□□□ -1.84
HMGB1P28-201ENST00000507778 ACEP12821 1306 aa3.58□□□□□ -1.84
HMGB1P28-201ENST00000507778 DISP3Q9P2K9 1392 aa3.58□□□□□ -1.84
HMGB1P28-201ENST00000507778 A0A087WYN8 130 aa3.57□□□□□ -1.84
HMGB1P28-201ENST00000507778 TRBV4-1A0A0J9YWV2 114 aa3.57□□□□□ -1.84
HMGB1P28-201ENST00000507778 C13orf42A0A1B0GVH6 325 aa3.57□□□□□ -1.84
HMGB1P28-201ENST00000507778 E5RGE8 158 aa3.57□□□□□ -1.84
HMGB1P28-201ENST00000507778 H3BMM5 538 aa3.57□□□□□ -1.84
HMGB1P28-201ENST00000507778 ATP9AO75110 1047 aa3.57□□□□□ -1.84
HMGB1P28-201ENST00000507778 IGKV3-20P01619 116 aa3.57□□□□□ -1.84
HMGB1P28-201ENST00000507778 VDRP11473 427 aa3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms