RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 HBQ1P09105 142 aa7.73□□□□□ -1.17
SCN1A-207ENST00000507401 RAB40ALP0C0E4 278 aa7.73□□□□□ -1.17
SCN1A-207ENST00000507401 ZSCAN5DPP0CG00 497 aa7.73□□□□□ -1.17
SCN1A-207ENST00000507401 UQCRBP14927 111 aa7.73□□□□□ -1.17
SCN1A-207ENST00000507401 ZNF12P17014 697 aa7.73□□□□□ -1.17
SCN1A-207ENST00000507401 KRT15P19012 456 aa7.73□□□□□ -1.17
SCN1A-207ENST00000507401 TPSB2P20231 275 aa7.73□□□□□ -1.17
SCN1A-207ENST00000507401 PHBP35232 272 aa7.73□□□□□ -1.17
SCN1A-207ENST00000507401 PREPP48147 710 aa7.73□□□□□ -1.17
SCN1A-207ENST00000507401 CHN2P52757 468 aa7.73□□□□□ -1.17
SCN1A-207ENST00000507401 NUP107P57740 925 aa7.73□□□□□ -1.17
SCN1A-207ENST00000507401 RPS15P62841 145 aaKnown RBP7.73□□□□□ -1.17
SCN1A-207ENST00000507401 PRKG2Q13237 762 aa7.73□□□□□ -1.17
SCN1A-207ENST00000507401 DNASE1L3Q13609 305 aa7.73□□□□□ -1.17
SCN1A-207ENST00000507401 TPSAB1Q15661 275 aa7.73□□□□□ -1.17
SCN1A-207ENST00000507401 GPR19Q15760 415 aa7.73□□□□□ -1.17
SCN1A-207ENST00000507401 DEFB109BQ30KR1 87 aa7.73□□□□□ -1.17
SCN1A-207ENST00000507401 IZUMO3Q5VZ72 239 aa7.73□□□□□ -1.17
SCN1A-207ENST00000507401 CGB2Q6NT52 195 aa7.73□□□□□ -1.17
SCN1A-207ENST00000507401 LRRC8BQ6P9F7 803 aa7.73□□□□□ -1.17
SCN1A-207ENST00000507401 ATG14Q6ZNE5 492 aa7.73□□□□□ -1.17
SCN1A-207ENST00000507401 GSTA5Q7RTV2 222 aa7.73□□□□□ -1.17
SCN1A-207ENST00000507401 TRABD2AQ86V40 505 aa7.73□□□□□ -1.17
SCN1A-207ENST00000507401 LRRC6Q86X45 466 aa7.73□□□□□ -1.17
SCN1A-207ENST00000507401 ZBED8Q8IZ13 594 aa7.73□□□□□ -1.17
SCN1A-207ENST00000507401 SLC22A15Q8IZD6 547 aa7.73□□□□□ -1.17
SCN1A-207ENST00000507401 ANKRD42Q8N9B4 389 aa7.73□□□□□ -1.17
SCN1A-207ENST00000507401 THAP4Q8WY91 577 aa7.73□□□□□ -1.17
SCN1A-207ENST00000507401 CPT1BQ92523 772 aa7.73□□□□□ -1.17
SCN1A-207ENST00000507401 TCTN2Q96GX1 697 aa7.73□□□□□ -1.17
SCN1A-207ENST00000507401 ZNF778Q96MU6 729 aa7.73□□□□□ -1.17
SCN1A-207ENST00000507401 TCF12Q99081 682 aa7.73□□□□□ -1.17
SCN1A-207ENST00000507401 CGREF1Q99674 301 aa7.73□□□□□ -1.17
SCN1A-207ENST00000507401 SLX1AQ9BQ83 275 aa7.73□□□□□ -1.17
SCN1A-207ENST00000507401 DPH2Q9BQC3 489 aaPredicted RBP7.73□□□□□ -1.17
SCN1A-207ENST00000507401 HAUS8Q9BT25 410 aa7.73□□□□□ -1.17
SCN1A-207ENST00000507401 KIFC1Q9BW19 673 aa7.73□□□□□ -1.17
SCN1A-207ENST00000507401 CADM1Q9BY67 442 aaKnown RBP7.73□□□□□ -1.17
SCN1A-207ENST00000507401 TRIM31Q9BZY9 425 aa7.73□□□□□ -1.17
SCN1A-207ENST00000507401 CCDC68Q9H2F9 335 aa7.73□□□□□ -1.17
SCN1A-207ENST00000507401 MRM3Q9HC36 420 aaKnown RBP7.73□□□□□ -1.17
SCN1A-207ENST00000507401 TREX1Q9NSU2 369 aa7.73□□□□□ -1.17
SCN1A-207ENST00000507401 UTP6Q9NYH9 597 aaKnown RBP7.73□□□□□ -1.17
SCN1A-207ENST00000507401 SLC2A6Q9UGQ3 507 aa7.73□□□□□ -1.17
SCN1A-207ENST00000507401 ZNF232Q9UNY5 417 aa7.73□□□□□ -1.17
SCN1A-207ENST00000507401 POLHQ9Y253 713 aa7.73□□□□□ -1.17
SCN1A-207ENST00000507401 FARSAQ9Y285 508 aaKnown RBP7.73□□□□□ -1.17
SCN1A-207ENST00000507401 ASF1AQ9Y294 204 aa7.73□□□□□ -1.17
SCN1A-207ENST00000507401 HEMK1Q9Y5R4 338 aaPredicted RBP7.73□□□□□ -1.17
SCN1A-207ENST00000507401 KCNMB2Q9Y691 235 aa7.73□□□□□ -1.17
SCN1A-207ENST00000507401 SPTA1P02549 2419 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.72□□□□□ -1.17
SCN1A-207ENST00000507401 CCDC78A2IDD5 438 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 H0YJX3 145 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 PRMT5O14744 637 aaPredicted RBP7.72□□□□□ -1.17
SCN1A-207ENST00000507401 PFDN6O15212 129 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 KATNA1O75449 491 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 SLCO2B1O94956 709 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 ESRRBO95718 433 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 RPN2P04844 631 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 APOA4P06727 396 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 CD63P08962 238 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 PRKAR1AP10644 381 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 ANPEPP15144 967 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 ST6GAL1P15907 406 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 CD33P20138 364 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 S100A1P23297 94 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 RPS3P23396 243 aaKnown RBP eCLIP7.72□□□□□ -1.17
SCN1A-207ENST00000507401 AOAHP28039 575 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 CCR7P32248 378 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 PGM1P36871 562 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 MAGEA6P43360 314 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 KCNJ1P48048 391 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 ERV3-1Q14264 604 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 SEMA3AQ14563 771 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 KIR2DS3Q14952 304 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 CCDC153Q494R4 210 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 ANKRD20A4Q4UJ75 823 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 SYTL3Q4VX76 610 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 ACSBG2Q5FVE4 666 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 PLEKHS1Q5SXH7 462 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 C16orf46Q6P387 395 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 DHRS4L2Q6PKH6 230 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 SPESP1Q6UW49 350 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 UNC5DQ6UXZ4 953 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 UNC5AQ6ZN44 842 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 NCCRP1Q6ZVX7 275 aaPredicted RBP7.72□□□□□ -1.17
SCN1A-207ENST00000507401 SYVN1Q86TM6 617 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 PRUNE1Q86TP1 453 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 PDSS2Q86YH6 399 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 ERI1Q8IV48 349 aaKnown RBP7.72□□□□□ -1.17
SCN1A-207ENST00000507401 DSELQ8IZU8 1212 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 MARVELD2Q8N4S9 558 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 SLC38A9Q8NBW4 561 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 OR5AR1Q8NGP9 310 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 OR6Y1Q8NGX8 325 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 MGARPQ8TDB4 240 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 CT55Q8WUE5 264 aa7.72□□□□□ -1.17
SCN1A-207ENST00000507401 ZNF75CPQ92670 426 aaPredicted RBP7.72□□□□□ -1.17
SCN1A-207ENST00000507401 SLC22A18Q96BI1 424 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms