RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 PKP4Q99569 1192 aa13.16□□□□□ -0.3
VARS-227ENST00000489979 MMP25Q9NPA2 562 aa13.16□□□□□ -0.3
VARS-227ENST00000489979 ABCF3Q9NUQ8 709 aa13.16□□□□□ -0.3
VARS-227ENST00000489979 COQ3Q9NZJ6 369 aa13.16□□□□□ -0.3
VARS-227ENST00000489979 HCN3Q9P1Z3 774 aa13.16□□□□□ -0.3
VARS-227ENST00000489979 ASB1Q9Y576 335 aa13.16□□□□□ -0.3
VARS-227ENST00000489979 GRID2IPA4D2P6 1211 aa13.15□□□□□ -0.3
VARS-227ENST00000489979 NIPSNAP2O75323 286 aa13.15□□□□□ -0.3
VARS-227ENST00000489979 NEURL1O76050 574 aa13.15□□□□□ -0.3
VARS-227ENST00000489979 NSA2O95478 260 aaKnown RBP13.15□□□□□ -0.3
VARS-227ENST00000489979 ATP5DP30049 168 aa13.15□□□□□ -0.3
VARS-227ENST00000489979 FMO4P31512 558 aa13.15□□□□□ -0.3
VARS-227ENST00000489979 CYLC1P35663 651 aaPredicted RBP13.15□□□□□ -0.3
VARS-227ENST00000489979 XCR1P46094 333 aa13.15□□□□□ -0.3
VARS-227ENST00000489979 AGTR2P50052 363 aa13.15□□□□□ -0.3
VARS-227ENST00000489979 RELAQ04206 551 aa13.15□□□□□ -0.3
VARS-227ENST00000489979 PTK6Q13882 451 aa13.15□□□□□ -0.3
VARS-227ENST00000489979 ARHGAP19Q14CB8 494 aa13.15□□□□□ -0.3
VARS-227ENST00000489979 MAPKAPK3Q16644 382 aa13.15□□□□□ -0.3
VARS-227ENST00000489979 ACSBG2Q5FVE4 666 aa13.15□□□□□ -0.3
VARS-227ENST00000489979 PAPD4Q6PIY7 484 aaKnown RBP13.15□□□□□ -0.3
VARS-227ENST00000489979 PRUNE1Q86TP1 453 aa13.15□□□□□ -0.3
VARS-227ENST00000489979 MPP5Q8N3R9 675 aa13.15□□□□□ -0.3
VARS-227ENST00000489979 CPSF7Q8N684 471 aaKnown RBP13.15□□□□□ -0.3
VARS-227ENST00000489979 SLC5A8Q8N695 610 aa13.15□□□□□ -0.3
VARS-227ENST00000489979 OTUD6BQ8N6M0 293 aa13.15□□□□□ -0.3
VARS-227ENST00000489979 HORMAD2Q8N7B1 307 aa13.15□□□□□ -0.3
VARS-227ENST00000489979 LRRC57Q8N9N7 239 aa13.15□□□□□ -0.3
VARS-227ENST00000489979 ATG4AQ8WYN0 398 aa13.15□□□□□ -0.3
VARS-227ENST00000489979 BIRC8Q96P09 236 aa13.15□□□□□ -0.3
VARS-227ENST00000489979 LRFN1Q9P244 771 aa13.15□□□□□ -0.3
VARS-227ENST00000489979 NIPBLQ6KC79 2804 aaeCLIP13.15□□□□□ -0.3
VARS-227ENST00000489979 PRRC2AP48634 2157 aaKnown RBP13.14□□□□□ -0.31
VARS-227ENST00000489979 SGK494L7N484 410 aa13.14□□□□□ -0.31
VARS-227ENST00000489979 SMAPO00193 183 aa13.14□□□□□ -0.31
VARS-227ENST00000489979 PSIP1O75475 530 aaKnown RBP13.14□□□□□ -0.31
VARS-227ENST00000489979 IFNB1P01574 187 aa13.14□□□□□ -0.31
VARS-227ENST00000489979 ETS1P14921 441 aa13.14□□□□□ -0.31
VARS-227ENST00000489979 ZNF24P17028 368 aa13.14□□□□□ -0.31
VARS-227ENST00000489979 IGFBP2P18065 325 aa13.14□□□□□ -0.31
VARS-227ENST00000489979 IL1RNP18510 177 aa13.14□□□□□ -0.31
VARS-227ENST00000489979 STIP1P31948 543 aaKnown RBP13.14□□□□□ -0.31
VARS-227ENST00000489979 SESN2P58004 480 aaPredicted RBP13.14□□□□□ -0.31
VARS-227ENST00000489979 CRADDP78560 199 aa13.14□□□□□ -0.31
VARS-227ENST00000489979 ABATP80404 500 aa13.14□□□□□ -0.31
VARS-227ENST00000489979 ACTN3Q08043 901 aaPredicted RBP13.14□□□□□ -0.31
VARS-227ENST00000489979 KLHL38Q2WGJ6 581 aa13.14□□□□□ -0.31
VARS-227ENST00000489979 SFT2D3Q587I9 215 aa13.14□□□□□ -0.31
VARS-227ENST00000489979 PCID2Q5JVF3 399 aa13.14□□□□□ -0.31
VARS-227ENST00000489979 ZNF468Q5VIY5 522 aaPredicted RBP13.14□□□□□ -0.31
VARS-227ENST00000489979 MCOLN3Q8TDD5 553 aa13.14□□□□□ -0.31
VARS-227ENST00000489979 MACROD1Q9BQ69 325 aa13.14□□□□□ -0.31
VARS-227ENST00000489979 CDCP1Q9H5V8 836 aa13.14□□□□□ -0.31
VARS-227ENST00000489979 RAB6BQ9NRW1 208 aa13.14□□□□□ -0.31
VARS-227ENST00000489979 FAM114A2Q9NRY5 505 aa13.14□□□□□ -0.31
VARS-227ENST00000489979 TREX1Q9NSU2 369 aa13.14□□□□□ -0.31
VARS-227ENST00000489979 GALPQ9UBC7 116 aa13.14□□□□□ -0.31
VARS-227ENST00000489979 TNFRSF10DQ9UBN6 386 aa13.14□□□□□ -0.31
VARS-227ENST00000489979 AMFRQ9UKV5 643 aa13.14□□□□□ -0.31
VARS-227ENST00000489979 PACSIN2Q9UNF0 486 aaPredicted RBP13.14□□□□□ -0.31
VARS-227ENST00000489979 DNHD1Q96M86 4753 aa13.13□□□□□ -0.31
VARS-227ENST00000489979 ZNF839A8K0R7 811 aa13.13□□□□□ -0.31
VARS-227ENST00000489979 E7ENX8 843 aa13.13□□□□□ -0.31
VARS-227ENST00000489979 H7BY64 318 aa13.13□□□□□ -0.31
VARS-227ENST00000489979 SLC25A12O75746 678 aa13.13□□□□□ -0.31
VARS-227ENST00000489979 SLC16A8O95907 504 aa13.13□□□□□ -0.31
VARS-227ENST00000489979 CATP04040 527 aaKnown RBP13.13□□□□□ -0.31
VARS-227ENST00000489979 APRTP07741 180 aa13.13□□□□□ -0.31
VARS-227ENST00000489979 CD99P14209 185 aa13.13□□□□□ -0.31
VARS-227ENST00000489979 HOXB4P17483 251 aaPredicted RBP13.13□□□□□ -0.31
VARS-227ENST00000489979 CHRM3P20309 590 aa13.13□□□□□ -0.31
VARS-227ENST00000489979 NMBRP28336 390 aa13.13□□□□□ -0.31
VARS-227ENST00000489979 PTGER1P34995 402 aa13.13□□□□□ -0.31
VARS-227ENST00000489979 HSD17B2P37059 387 aa13.13□□□□□ -0.31
VARS-227ENST00000489979 BCL6P41182 706 aa13.13□□□□□ -0.31
VARS-227ENST00000489979 TAS2R50P59544 299 aa13.13□□□□□ -0.31
VARS-227ENST00000489979 TAP2Q03519 686 aa13.13□□□□□ -0.31
VARS-227ENST00000489979 KCNJ11Q14654 390 aa13.13□□□□□ -0.31
VARS-227ENST00000489979 USP10Q14694 798 aaKnown RBP13.13□□□□□ -0.31
VARS-227ENST00000489979 OASLQ15646 514 aaKnown RBP13.13□□□□□ -0.31
VARS-227ENST00000489979 CEP128Q6ZU80 1094 aa13.13□□□□□ -0.31
VARS-227ENST00000489979 PEX26Q7Z412 305 aa13.13□□□□□ -0.31
VARS-227ENST00000489979 VN1R4Q7Z5H5 301 aa13.13□□□□□ -0.31
VARS-227ENST00000489979 MARVELD2Q8N4S9 558 aa13.13□□□□□ -0.31
VARS-227ENST00000489979 UBL4BQ8N7F7 174 aa13.13□□□□□ -0.31
VARS-227ENST00000489979 ZNF480Q8WV37 535 aa13.13□□□□□ -0.31
VARS-227ENST00000489979 LPGAT1Q92604 370 aa13.13□□□□□ -0.31
VARS-227ENST00000489979 PRAP1Q96NZ9 151 aa13.13□□□□□ -0.31
VARS-227ENST00000489979 LPAR4Q99677 370 aa13.13□□□□□ -0.31
VARS-227ENST00000489979 OLFM1Q99784 485 aa13.13□□□□□ -0.31
VARS-227ENST00000489979 EBNA1BP2Q99848 306 aaKnown RBP13.13□□□□□ -0.31
VARS-227ENST00000489979 TMUB1Q9BVT8 246 aa13.13□□□□□ -0.31
VARS-227ENST00000489979 LACRTQ9GZZ8 138 aa13.13□□□□□ -0.31
VARS-227ENST00000489979 NPDC1Q9NQX5 325 aaPredicted RBP13.13□□□□□ -0.31
VARS-227ENST00000489979 EPN1Q9Y6I3 576 aaPredicted RBP13.13□□□□□ -0.31
VARS-227ENST00000489979 ANKHD1Q8IWZ3 2542 aaKnown RBP13.12□□□□□ -0.31
VARS-227ENST00000489979 NKX2-6A6NCS4 301 aa13.12□□□□□ -0.31
VARS-227ENST00000489979 FAM90A27PA6NNH2 459 aa13.12□□□□□ -0.31
VARS-227ENST00000489979 BTNL10A8MVZ5 291 aa13.12□□□□□ -0.31
VARS-227ENST00000489979 GOLGA8KD6RF30 607 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms