RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 KCNAB1Q14722 419 aa16.35■□□□□ 0.21
VIM-205ENST00000485947 KIR2DS3Q14952 304 aa16.35■□□□□ 0.21
VIM-205ENST00000485947 PCBP2Q15366 365 aaKnown RBP eCLIP16.35■□□□□ 0.21
VIM-205ENST00000485947 SPESP1Q6UW49 350 aa16.35■□□□□ 0.21
VIM-205ENST00000485947 ZNF517Q6ZMY9 492 aaPredicted RBP16.35■□□□□ 0.21
VIM-205ENST00000485947 TMEM126BQ8IUX1 230 aa16.35■□□□□ 0.21
VIM-205ENST00000485947 KIRREL3Q8IZU9 778 aa16.35■□□□□ 0.21
VIM-205ENST00000485947 PPP4R1Q8TF05 950 aa16.35■□□□□ 0.21
VIM-205ENST00000485947 APOBEC4Q8WW27 367 aaKnown RBP16.35■□□□□ 0.21
VIM-205ENST00000485947 ATL1Q8WXF7 558 aa16.35■□□□□ 0.21
VIM-205ENST00000485947 SLC22A18Q96BI1 424 aa16.35■□□□□ 0.21
VIM-205ENST00000485947 RHBDF1Q96CC6 855 aa16.35■□□□□ 0.21
VIM-205ENST00000485947 TCTN2Q96GX1 697 aa16.35■□□□□ 0.21
VIM-205ENST00000485947 EGFL8Q99944 293 aa16.35■□□□□ 0.21
VIM-205ENST00000485947 DPH2Q9BQC3 489 aaPredicted RBP16.35■□□□□ 0.21
VIM-205ENST00000485947 HGH1Q9BTY7 390 aa16.35■□□□□ 0.21
VIM-205ENST00000485947 SEMA4CQ9C0C4 833 aa16.35■□□□□ 0.21
VIM-205ENST00000485947 SLC25A18Q9H1K4 315 aa16.35■□□□□ 0.21
VIM-205ENST00000485947 ARL15Q9NXU5 204 aa16.35■□□□□ 0.21
VIM-205ENST00000485947 UTP6Q9NYH9 597 aaKnown RBP16.35■□□□□ 0.21
VIM-205ENST00000485947 ACTR10Q9NZ32 417 aa16.35■□□□□ 0.21
VIM-205ENST00000485947 IL17BQ9UHF5 180 aa16.35■□□□□ 0.21
VIM-205ENST00000485947 PTBP2Q9UKA9 531 aaKnown RBP16.35■□□□□ 0.21
VIM-205ENST00000485947 ICKQ9UPZ9 632 aa16.35■□□□□ 0.21
VIM-205ENST00000485947 NCF1BA6NI72 391 aaPredicted RBP16.34■□□□□ 0.21
VIM-205ENST00000485947 NCF1CA8MVU1 366 aaPredicted RBP16.34■□□□□ 0.21
VIM-205ENST00000485947 ARHGEF33A8MVX0 844 aa16.34■□□□□ 0.21
VIM-205ENST00000485947 NKX2-8O15522 239 aa16.34■□□□□ 0.21
VIM-205ENST00000485947 RRP9O43818 475 aaKnown RBP16.34■□□□□ 0.21
VIM-205ENST00000485947 SCRG1O75711 98 aa16.34■□□□□ 0.21
VIM-205ENST00000485947 C1orf105O95561 183 aa16.34■□□□□ 0.21
VIM-205ENST00000485947 FAM107AO95990 144 aa16.34■□□□□ 0.21
VIM-205ENST00000485947 NCF1P14598 390 aaPredicted RBP16.34■□□□□ 0.21
VIM-205ENST00000485947 DRD4P21917 467 aa16.34■□□□□ 0.21
VIM-205ENST00000485947 PRKG2Q13237 762 aa16.34■□□□□ 0.21
VIM-205ENST00000485947 DNASE1L3Q13609 305 aa16.34■□□□□ 0.21
VIM-205ENST00000485947 SLC5A12Q1EHB4 618 aa16.34■□□□□ 0.21
VIM-205ENST00000485947 FRMD7Q6ZUT3 714 aa16.34■□□□□ 0.21
VIM-205ENST00000485947 FAM47EQ6ZV65 393 aa16.34■□□□□ 0.21
VIM-205ENST00000485947 CPLX4Q7Z7G2 160 aa16.34■□□□□ 0.21
VIM-205ENST00000485947 DCUN1D3Q8IWE4 304 aa16.34■□□□□ 0.21
VIM-205ENST00000485947 CCNYL1Q8N7R7 359 aa16.34■□□□□ 0.21
VIM-205ENST00000485947 OR5AR1Q8NGP9 310 aa16.34■□□□□ 0.21
VIM-205ENST00000485947 CFAP61Q8NHU2 1237 aa16.34■□□□□ 0.21
VIM-205ENST00000485947 FBXL8Q96CD0 374 aa16.34■□□□□ 0.21
VIM-205ENST00000485947 CCDC138Q96M89 665 aa16.34■□□□□ 0.21
VIM-205ENST00000485947 TRAPPC9Q96Q05 1148 aa16.34■□□□□ 0.21
VIM-205ENST00000485947 RAB11FIP5Q9BXF6 653 aa16.34■□□□□ 0.21
VIM-205ENST00000485947 EML4Q9HC35 981 aaKnown RBP16.34■□□□□ 0.21
VIM-205ENST00000485947 SLCO1B3Q9NPD5 702 aa16.34■□□□□ 0.21
VIM-205ENST00000485947 FGFR1OP2Q9NVK5 253 aa16.34■□□□□ 0.21
VIM-205ENST00000485947 WWOXQ9NZC7 414 aa16.34■□□□□ 0.21
VIM-205ENST00000485947 CREG1O75629 220 aa16.33■□□□□ 0.2
VIM-205ENST00000485947 SUPT7LO94864 414 aa16.33■□□□□ 0.2
VIM-205ENST00000485947 TIAF1O95411 115 aa16.33■□□□□ 0.2
VIM-205ENST00000485947 TGDSO95455 350 aa16.33■□□□□ 0.2
VIM-205ENST00000485947 HSPA4LO95757 839 aa16.33■□□□□ 0.2
VIM-205ENST00000485947 GUCA1CO95843 209 aa16.33■□□□□ 0.2
VIM-205ENST00000485947 CHRM5P08912 532 aaPredicted RBP16.33■□□□□ 0.2
VIM-205ENST00000485947 RAB40ALP0C0E4 278 aa16.33■□□□□ 0.2
VIM-205ENST00000485947 FAM87AP0C7U9 286 aa16.33■□□□□ 0.2
VIM-205ENST00000485947 EEF1DP29692 281 aaKnown RBP16.33■□□□□ 0.2
VIM-205ENST00000485947 GGT5P36269 586 aa16.33■□□□□ 0.2
VIM-205ENST00000485947 RAB28P51157 221 aa16.33■□□□□ 0.2
VIM-205ENST00000485947 POLE2P56282 527 aa16.33■□□□□ 0.2
VIM-205ENST00000485947 RPS15P62841 145 aaKnown RBP16.33■□□□□ 0.2
VIM-205ENST00000485947 GPR19Q15760 415 aa16.33■□□□□ 0.2
VIM-205ENST00000485947 UNC50Q53HI1 259 aa16.33■□□□□ 0.2
VIM-205ENST00000485947 CES4AQ5XG92 561 aa16.33■□□□□ 0.2
VIM-205ENST00000485947 CRLF3Q8IUI8 442 aa16.33■□□□□ 0.2
VIM-205ENST00000485947 GSTO2Q9H4Y5 243 aa16.33■□□□□ 0.2
VIM-205ENST00000485947 HAO1Q9UJM8 370 aa16.33■□□□□ 0.2
VIM-205ENST00000485947 POLHQ9Y253 713 aa16.33■□□□□ 0.2
VIM-205ENST00000485947 STK38LQ9Y2H1 464 aa16.33■□□□□ 0.2
VIM-205ENST00000485947 EPB41L3Q9Y2J2 1087 aaPredicted RBP16.33■□□□□ 0.2
VIM-205ENST00000485947 AP1M2Q9Y6Q5 423 aa16.33■□□□□ 0.2
VIM-205ENST00000485947 A0A0J9YY10 115 aa16.32■□□□□ 0.2
VIM-205ENST00000485947 MYO1CO00159 1063 aa16.32■□□□□ 0.2
VIM-205ENST00000485947 ITM2AO43736 263 aa16.32■□□□□ 0.2
VIM-205ENST00000485947 CD63P08962 238 aa16.32■□□□□ 0.2
VIM-205ENST00000485947 TROVE2P10155 538 aaKnown RBP eCLIP16.32■□□□□ 0.2
VIM-205ENST00000485947 ST6GAL1P15907 406 aa16.32■□□□□ 0.2
VIM-205ENST00000485947 F8A1P23610 371 aa16.32■□□□□ 0.2
VIM-205ENST00000485947 PTPN4P29074 926 aa16.32■□□□□ 0.2
VIM-205ENST00000485947 BDKRB1P46663 353 aa16.32■□□□□ 0.2
VIM-205ENST00000485947 PIK3CGP48736 1102 aa16.32■□□□□ 0.2
VIM-205ENST00000485947 HK2P52789 917 aa16.32■□□□□ 0.2
VIM-205ENST00000485947 ITGA1P56199 1179 aa16.32■□□□□ 0.2
VIM-205ENST00000485947 KCNAB2Q13303 367 aa16.32■□□□□ 0.2
VIM-205ENST00000485947 EEF1AKMT2Q5JPI9 291 aaKnown RBP16.32■□□□□ 0.2
VIM-205ENST00000485947 SYVN1Q86TM6 617 aa16.32■□□□□ 0.2
VIM-205ENST00000485947 KLHDC8AQ8IYD2 350 aa16.32■□□□□ 0.2
VIM-205ENST00000485947 GPR135Q8IZ08 494 aa16.32■□□□□ 0.2
VIM-205ENST00000485947 RAB42Q8N4Z0 105 aa16.32■□□□□ 0.2
VIM-205ENST00000485947 ZNF483Q8TF39 744 aaPredicted RBP16.32■□□□□ 0.2
VIM-205ENST00000485947 CT55Q8WUE5 264 aa16.32■□□□□ 0.2
VIM-205ENST00000485947 THAP4Q8WY91 577 aa16.32■□□□□ 0.2
VIM-205ENST00000485947 RAD51AP1Q96B01 352 aa16.32■□□□□ 0.2
VIM-205ENST00000485947 OR2A14Q96R47 310 aa16.32■□□□□ 0.2
VIM-205ENST00000485947 CCT8L2Q96SF2 557 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms