RNA–Protein interactions for RNA: ENST00000482158.1

SF3B1-210, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 772 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-210ENST00000482158 PRDM4Q9UKN5 801 aa4.98□□□□□ -1.61
SF3B1-210ENST00000482158 RUVBL2Q9Y230 463 aaKnown RBP4.98□□□□□ -1.61
SF3B1-210ENST00000482158 SPATA31D1Q6ZQQ2 1576 aa4.98□□□□□ -1.61
SF3B1-210ENST00000482158 KIAA1217Q5T5P2 1943 aa4.97□□□□□ -1.61
SF3B1-210ENST00000482158 A0A0B4J203 849 aa4.97□□□□□ -1.61
SF3B1-210ENST00000482158 SLCO1B7G3V0H7 640 aa4.97□□□□□ -1.61
SF3B1-210ENST00000482158 NR5A2O00482 541 aa4.97□□□□□ -1.61
SF3B1-210ENST00000482158 ZNF195O14628 629 aa4.97□□□□□ -1.61
SF3B1-210ENST00000482158 CTDSPLO15194 276 aa4.97□□□□□ -1.61
SF3B1-210ENST00000482158 ZFAND5O76080 213 aa4.97□□□□□ -1.61
SF3B1-210ENST00000482158 CCND3P30281 292 aaPredicted RBP4.97□□□□□ -1.61
SF3B1-210ENST00000482158 TRA2AQ13595 282 aaKnown RBP eCLIP4.97□□□□□ -1.61
SF3B1-210ENST00000482158 PWWP2BQ6NUJ5 590 aa4.97□□□□□ -1.61
SF3B1-210ENST00000482158 CASC4Q6P4E1 433 aa4.97□□□□□ -1.61
SF3B1-210ENST00000482158 FUT10Q6P4F1 479 aa4.97□□□□□ -1.61
SF3B1-210ENST00000482158 TUSC5Q8IXB3 177 aa4.97□□□□□ -1.61
SF3B1-210ENST00000482158 SYCP3Q8IZU3 236 aa4.97□□□□□ -1.61
SF3B1-210ENST00000482158 NIPA2Q8N8Q9 360 aa4.97□□□□□ -1.61
SF3B1-210ENST00000482158 GPRC5AQ8NFJ5 357 aa4.97□□□□□ -1.61
SF3B1-210ENST00000482158 CTCFLQ8NI51 663 aaPredicted RBP4.97□□□□□ -1.61
SF3B1-210ENST00000482158 SLC26A7Q8TE54 656 aa4.97□□□□□ -1.61
SF3B1-210ENST00000482158 BTBD9Q96Q07 612 aa4.97□□□□□ -1.61
SF3B1-210ENST00000482158 UTP14AQ9BVJ6 771 aaKnown RBP4.97□□□□□ -1.61
SF3B1-210ENST00000482158 RBM4Q9BWF3 364 aaKnown RBP4.97□□□□□ -1.61
SF3B1-210ENST00000482158 FUT8Q9BYC5 575 aa4.97□□□□□ -1.61
SF3B1-210ENST00000482158 ZNF350Q9GZX5 532 aa4.97□□□□□ -1.61
SF3B1-210ENST00000482158 FAM49AQ9H0Q0 323 aaPredicted RBP4.97□□□□□ -1.61
SF3B1-210ENST00000482158 UBQLN3Q9H347 655 aa4.97□□□□□ -1.61
SF3B1-210ENST00000482158 ATAD3AQ9NVI7 634 aa4.97□□□□□ -1.61
SF3B1-210ENST00000482158 VPS18Q9P253 973 aa4.97□□□□□ -1.61
SF3B1-210ENST00000482158 NOCTQ9UK39 431 aaKnown RBP4.97□□□□□ -1.61
SF3B1-210ENST00000482158 GPR132Q9UNW8 380 aa4.97□□□□□ -1.61
SF3B1-210ENST00000482158 PA2G4Q9UQ80 394 aaKnown RBP4.97□□□□□ -1.61
SF3B1-210ENST00000482158 ANGPTL3Q9Y5C1 460 aa4.97□□□□□ -1.61
SF3B1-210ENST00000482158 TRAV18A0A075B6X5 111 aa4.96□□□□□ -1.62
SF3B1-210ENST00000482158 A0A1W2PR80 420 aa4.96□□□□□ -1.62
SF3B1-210ENST00000482158 MEIOCA2RUB1 952 aa4.96□□□□□ -1.62
SF3B1-210ENST00000482158 NPIPA3F8WFD2 350 aa4.96□□□□□ -1.62
SF3B1-210ENST00000482158 LINC01565O15544 149 aa4.96□□□□□ -1.62
SF3B1-210ENST00000482158 EDIL3O43854 480 aa4.96□□□□□ -1.62
SF3B1-210ENST00000482158 SLC16A8O95907 504 aa4.96□□□□□ -1.62
SF3B1-210ENST00000482158 CETN2P41208 172 aa4.96□□□□□ -1.62
SF3B1-210ENST00000482158 FRKP42685 505 aaPredicted RBP4.96□□□□□ -1.62
SF3B1-210ENST00000482158 SRSF9Q13242 221 aaKnown RBP eCLIP4.96□□□□□ -1.62
SF3B1-210ENST00000482158 ITGA9Q13797 1035 aa4.96□□□□□ -1.62
SF3B1-210ENST00000482158 HNRNPDQ14103 355 aaKnown RBP4.96□□□□□ -1.62
SF3B1-210ENST00000482158 PTPN14Q15678 1187 aa4.96□□□□□ -1.62
SF3B1-210ENST00000482158 IQCCQ4KMZ1 466 aa4.96□□□□□ -1.62
SF3B1-210ENST00000482158 KLHL10Q6JEL2 608 aa4.96□□□□□ -1.62
SF3B1-210ENST00000482158 PHLDB2Q86SQ0 1253 aa4.96□□□□□ -1.62
SF3B1-210ENST00000482158 PRUNE1Q86TP1 453 aa4.96□□□□□ -1.62
SF3B1-210ENST00000482158 LSMEM2Q8N112 164 aa4.96□□□□□ -1.62
SF3B1-210ENST00000482158 GPC2Q8N158 579 aa4.96□□□□□ -1.62
SF3B1-210ENST00000482158 FAM89BQ8N5H3 189 aa4.96□□□□□ -1.62
SF3B1-210ENST00000482158 GBP7Q8N8V2 638 aaPredicted RBP4.96□□□□□ -1.62
SF3B1-210ENST00000482158 AFAP1L1Q8TED9 768 aa4.96□□□□□ -1.62
SF3B1-210ENST00000482158 SMAP2Q8WU79 429 aaPredicted RBP4.96□□□□□ -1.62
SF3B1-210ENST00000482158 PTP4A1Q93096 173 aa4.96□□□□□ -1.62
SF3B1-210ENST00000482158 CENPTQ96BT3 561 aa4.96□□□□□ -1.62
SF3B1-210ENST00000482158 SNRNP40Q96DI7 357 aaKnown RBP4.96□□□□□ -1.62
SF3B1-210ENST00000482158 FAM218AQ96MZ4 157 aa4.96□□□□□ -1.62
SF3B1-210ENST00000482158 ATG101Q9BSB4 218 aa4.96□□□□□ -1.62
SF3B1-210ENST00000482158 ALKBH7Q9BT30 221 aaPredicted RBP4.96□□□□□ -1.62
SF3B1-210ENST00000482158 C5orf66Q9H5L9 145 aa4.96□□□□□ -1.62
SF3B1-210ENST00000482158 C10orf88Q9H8K7 445 aa4.96□□□□□ -1.62
SF3B1-210ENST00000482158 SRD5A3Q9H8P0 318 aa4.96□□□□□ -1.62
SF3B1-210ENST00000482158 CNIH4Q9P003 139 aa4.96□□□□□ -1.62
SF3B1-210ENST00000482158 LEF1Q9UJU2 399 aaPredicted RBP4.96□□□□□ -1.62
SF3B1-210ENST00000482158 PILRBQ9UKJ0 227 aa4.96□□□□□ -1.62
SF3B1-210ENST00000482158 AGTPBP1Q9UPW5 1226 aa4.96□□□□□ -1.62
SF3B1-210ENST00000482158 WDR37Q9Y2I8 494 aa4.96□□□□□ -1.62
SF3B1-210ENST00000482158 MRPS28Q9Y2Q9 187 aaKnown RBP4.96□□□□□ -1.62
SF3B1-210ENST00000482158 TRBV4-1A0A0J9YWV2 114 aa4.95□□□□□ -1.62
SF3B1-210ENST00000482158 ILVBLA1L0T0 632 aa4.95□□□□□ -1.62
SF3B1-210ENST00000482158 SDR42E2A6NKP2 422 aa4.95□□□□□ -1.62
SF3B1-210ENST00000482158 KBTBD13C9JR72 458 aa4.95□□□□□ -1.62
SF3B1-210ENST00000482158 H0YIG0 161 aa4.95□□□□□ -1.62
SF3B1-210ENST00000482158 FMO6PO60774 539 aa4.95□□□□□ -1.62
SF3B1-210ENST00000482158 ZG16O60844 167 aa4.95□□□□□ -1.62
SF3B1-210ENST00000482158 SP9P0CG40 484 aa4.95□□□□□ -1.62
SF3B1-210ENST00000482158 ITIH1P19827 911 aa4.95□□□□□ -1.62
SF3B1-210ENST00000482158 RBMS1P29558 406 aaKnown RBP4.95□□□□□ -1.62
SF3B1-210ENST00000482158 SOX3P41225 446 aa4.95□□□□□ -1.62
SF3B1-210ENST00000482158 C17orf67Q0P5P2 114 aa4.95□□□□□ -1.62
SF3B1-210ENST00000482158 TMEM187Q14656 261 aa4.95□□□□□ -1.62
SF3B1-210ENST00000482158 CCDC158Q5M9N0 1113 aa4.95□□□□□ -1.62
SF3B1-210ENST00000482158 Q6ZRP5 223 aa4.95□□□□□ -1.62
SF3B1-210ENST00000482158 SLC24A5Q71RS6 500 aa4.95□□□□□ -1.62
SF3B1-210ENST00000482158 ANKRD46Q86W74 232 aa4.95□□□□□ -1.62
SF3B1-210ENST00000482158 HOGA1Q86XE5 327 aa4.95□□□□□ -1.62
SF3B1-210ENST00000482158 CROCCP3Q8IVE0 287 aa4.95□□□□□ -1.62
SF3B1-210ENST00000482158 TDHQ8IZJ6 230 aa4.95□□□□□ -1.62
SF3B1-210ENST00000482158 PRSS35Q8N3Z0 413 aa4.95□□□□□ -1.62
SF3B1-210ENST00000482158 MRGPRDQ8TDS7 321 aa4.95□□□□□ -1.62
SF3B1-210ENST00000482158 GRK7Q8WTQ7 553 aa4.95□□□□□ -1.62
SF3B1-210ENST00000482158 ZNRF4Q8WWF5 429 aa4.95□□□□□ -1.62
SF3B1-210ENST00000482158 TEKT1Q969V4 418 aa4.95□□□□□ -1.62
SF3B1-210ENST00000482158 TSSK2Q96PF2 358 aa4.95□□□□□ -1.62
SF3B1-210ENST00000482158 HNRNPABQ99729 332 aaKnown RBP4.95□□□□□ -1.62
SF3B1-210ENST00000482158 NKX3-1Q99801 234 aaPredicted RBP4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms