RNA–Protein interactions for RNA: ENST00000452973.6

VTA1-203, Transcript of vesicle trafficking 1, humanhuman

TSL 2 BASIC

Gene VTA1, Length 3,177 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1-203ENST00000452973 ANKRD54Q6NXT1 300 aa11.34□□□□□ -0.59
VTA1-203ENST00000452973 SPESP1Q6UW49 350 aa11.34□□□□□ -0.59
VTA1-203ENST00000452973 COMMD6Q7Z4G1 85 aa11.34□□□□□ -0.59
VTA1-203ENST00000452973 ANKRD60Q9BZ19 345 aa11.34□□□□□ -0.59
VTA1-203ENST00000452973 FAM192AQ9GZU8 254 aa11.34□□□□□ -0.59
VTA1-203ENST00000452973 WDR26Q9H7D7 661 aa11.34□□□□□ -0.59
VTA1-203ENST00000452973 BRF2Q9HAW0 419 aa11.34□□□□□ -0.59
VTA1-203ENST00000452973 ITM2CQ9NQX7 267 aa11.34□□□□□ -0.59
VTA1-203ENST00000452973 AASDHPPTQ9NRN7 309 aa11.34□□□□□ -0.59
VTA1-203ENST00000452973 KCNK6Q9Y257 313 aa11.34□□□□□ -0.59
VTA1-203ENST00000452973 MAN2B2Q9Y2E5 1009 aa11.34□□□□□ -0.59
VTA1-203ENST00000452973 MYRFQ9Y2G1 1151 aa11.34□□□□□ -0.59
VTA1-203ENST00000452973 C17orf113A0A1B0GUU1 675 aa11.34□□□□□ -0.59
VTA1-203ENST00000452973 SCAMP2O15127 329 aaKnown RBP11.34□□□□□ -0.59
VTA1-203ENST00000452973 SLC31A1O15431 190 aa11.34□□□□□ -0.59
VTA1-203ENST00000452973 DIRAS1O95057 198 aa11.34□□□□□ -0.59
VTA1-203ENST00000452973 SCELO95171 688 aa11.34□□□□□ -0.59
VTA1-203ENST00000452973 H6PDO95479 791 aa11.34□□□□□ -0.59
VTA1-203ENST00000452973 RPL5P46777 297 aaKnown RBP11.34□□□□□ -0.59
VTA1-203ENST00000452973 SGCGQ13326 291 aa11.34□□□□□ -0.59
VTA1-203ENST00000452973 MAP7Q14244 749 aa11.34□□□□□ -0.59
VTA1-203ENST00000452973 LAPTM4AQ15012 233 aa11.34□□□□□ -0.59
VTA1-203ENST00000452973 CNPY1Q3B7I2 92 aa11.34□□□□□ -0.59
VTA1-203ENST00000452973 NXPE4Q6UWF7 544 aa11.34□□□□□ -0.59
VTA1-203ENST00000452973 ARMCX6Q7L4S7 300 aa11.34□□□□□ -0.59
VTA1-203ENST00000452973 SPRED1Q7Z699 444 aa11.34□□□□□ -0.59
VTA1-203ENST00000452973 GALNT13Q8IUC8 556 aa11.34□□□□□ -0.59
VTA1-203ENST00000452973 ZDHHC13Q8IUH4 622 aa11.34□□□□□ -0.59
VTA1-203ENST00000452973 CHTF18Q8WVB6 975 aa11.34□□□□□ -0.59
VTA1-203ENST00000452973 CCDC115Q96NT0 180 aa11.34□□□□□ -0.59
VTA1-203ENST00000452973 TRAPPC9Q96Q05 1148 aa11.34□□□□□ -0.59
VTA1-203ENST00000452973 DPEP2Q9H4A9 486 aa11.34□□□□□ -0.59
VTA1-203ENST00000452973 ZNF696Q9H7X3 374 aa11.34□□□□□ -0.59
VTA1-203ENST00000452973 LTB4R2Q9NPC1 389 aa11.34□□□□□ -0.59
VTA1-203ENST00000452973 PNPLA3Q9NST1 481 aa11.34□□□□□ -0.59
VTA1-203ENST00000452973 IMP3Q9NV31 184 aaKnown RBP11.34□□□□□ -0.59
VTA1-203ENST00000452973 LMCD1Q9NZU5 365 aa11.34□□□□□ -0.59
VTA1-203ENST00000452973 PLEKHM1Q9Y4G2 1056 aa11.34□□□□□ -0.59
VTA1-203ENST00000452973 GON4LQ3T8J9 2241 aa11.33□□□□□ -0.6
VTA1-203ENST00000452973 FEZF1A0PJY2 475 aa11.33□□□□□ -0.6
VTA1-203ENST00000452973 G3V2T6 193 aa11.33□□□□□ -0.6
VTA1-203ENST00000452973 NUDT7P0C024 238 aa11.33□□□□□ -0.6
VTA1-203ENST00000452973 TIA1P31483 386 aaKnown RBP eCLIP11.33□□□□□ -0.6
VTA1-203ENST00000452973 FGL2Q14314 439 aa11.33□□□□□ -0.6
VTA1-203ENST00000452973 IRF4Q15306 451 aa11.33□□□□□ -0.6
VTA1-203ENST00000452973 PAGE2BQ5JRK9 111 aa11.33□□□□□ -0.6
VTA1-203ENST00000452973 RBM44Q6ZP01 1051 aaKnown RBP11.33□□□□□ -0.6
VTA1-203ENST00000452973 ADCK2Q7Z695 626 aa11.33□□□□□ -0.6
VTA1-203ENST00000452973 PDZD3Q86UT5 571 aa11.33□□□□□ -0.6
VTA1-203ENST00000452973 APLFQ8IW19 511 aaPredicted RBP11.33□□□□□ -0.6
VTA1-203ENST00000452973 PACRGLQ8N7B6 248 aa11.33□□□□□ -0.6
VTA1-203ENST00000452973 MFSD2AQ8NA29 543 aa11.33□□□□□ -0.6
VTA1-203ENST00000452973 MAL2Q969L2 176 aa11.33□□□□□ -0.6
VTA1-203ENST00000452973 SDCCAG3Q96C92 435 aa11.33□□□□□ -0.6
VTA1-203ENST00000452973 REPS1Q96D71 796 aa11.33□□□□□ -0.6
VTA1-203ENST00000452973 EFCAB11Q9BUY7 163 aa11.33□□□□□ -0.6
VTA1-203ENST00000452973 SGPP1Q9BX95 441 aa11.33□□□□□ -0.6
VTA1-203ENST00000452973 MRPS26Q9BYN8 205 aaKnown RBP11.33□□□□□ -0.6
VTA1-203ENST00000452973 XKR8Q9H6D3 395 aa11.33□□□□□ -0.6
VTA1-203ENST00000452973 DCAF13Q9NV06 445 aaKnown RBP11.33□□□□□ -0.6
VTA1-203ENST00000452973 DGKBQ9Y6T7 804 aa11.33□□□□□ -0.6
VTA1-203ENST00000452973 TBC1D3DA0A087WVF3 549 aa11.33□□□□□ -0.6
VTA1-203ENST00000452973 TBC1D3IA0A087WXS9 549 aa11.33□□□□□ -0.6
VTA1-203ENST00000452973 TBC1D3EA0A087X179 549 aa11.33□□□□□ -0.6
VTA1-203ENST00000452973 TBC1D3KA0A087X1G2 549 aa11.33□□□□□ -0.6
VTA1-203ENST00000452973 TBC1D3FA6NER0 549 aaPredicted RBP11.33□□□□□ -0.6
VTA1-203ENST00000452973 TBC1D3LB9A6J9 549 aa11.33□□□□□ -0.6
VTA1-203ENST00000452973 RTCAO00442 366 aaKnown RBP11.33□□□□□ -0.6
VTA1-203ENST00000452973 SCN2BO60939 215 aa11.33□□□□□ -0.6
VTA1-203ENST00000452973 FKBP9O95302 570 aa11.33□□□□□ -0.6
VTA1-203ENST00000452973 STATHP02808 62 aa11.33□□□□□ -0.6
VTA1-203ENST00000452973 FUCA1P04066 466 aa11.33□□□□□ -0.6
VTA1-203ENST00000452973 SERPIND1P05546 499 aa11.33□□□□□ -0.6
VTA1-203ENST00000452973 SLC35G4P0C7Q5 338 aa11.33□□□□□ -0.6
VTA1-203ENST00000452973 TBC1D3HP0C7X1 549 aa11.33□□□□□ -0.6
VTA1-203ENST00000452973 YAP1P46937 504 aaKnown RBP11.33□□□□□ -0.6
VTA1-203ENST00000452973 IL1RL1Q01638 556 aa11.33□□□□□ -0.6
VTA1-203ENST00000452973 ABHD18Q0P651 414 aa11.33□□□□□ -0.6
VTA1-203ENST00000452973 MTAPQ13126 283 aa11.33□□□□□ -0.6
VTA1-203ENST00000452973 COL9A2Q14055 689 aaPredicted RBP11.33□□□□□ -0.6
VTA1-203ENST00000452973 SPIN4Q56A73 249 aa11.33□□□□□ -0.6
VTA1-203ENST00000452973 TBC1D3GQ6DHY5 549 aa11.33□□□□□ -0.6
VTA1-203ENST00000452973 TBC1D3CQ6IPX1 549 aa11.33□□□□□ -0.6
VTA1-203ENST00000452973 TMIGD1Q6UXZ0 262 aa11.33□□□□□ -0.6
VTA1-203ENST00000452973 FKBP9P1Q75LS8 142 aa11.33□□□□□ -0.6
VTA1-203ENST00000452973 PLD3Q8IV08 490 aa11.33□□□□□ -0.6
VTA1-203ENST00000452973 FAM20CQ8IXL6 584 aa11.33□□□□□ -0.6
VTA1-203ENST00000452973 TBC1D3Q8IZP1 549 aaPredicted RBP11.33□□□□□ -0.6
VTA1-203ENST00000452973 MMP21Q8N119 569 aa11.33□□□□□ -0.6
VTA1-203ENST00000452973 KIAA1958Q8N8K9 716 aa11.33□□□□□ -0.6
VTA1-203ENST00000452973 VPS37AQ8NEZ2 397 aa11.33□□□□□ -0.6
VTA1-203ENST00000452973 MRPL38Q96DV4 380 aaKnown RBP11.33□□□□□ -0.6
VTA1-203ENST00000452973 COX14Q96I36 57 aa11.33□□□□□ -0.6
VTA1-203ENST00000452973 LINC00615Q96LM1 132 aaPredicted RBP11.33□□□□□ -0.6
VTA1-203ENST00000452973 RSPH9Q9H1X1 276 aaPredicted RBP11.33□□□□□ -0.6
VTA1-203ENST00000452973 TPT1P8Q9HAU6 139 aa11.33□□□□□ -0.6
VTA1-203ENST00000452973 DMRT3Q9NQL9 472 aa11.33□□□□□ -0.6
VTA1-203ENST00000452973 CUEDC1Q9NWM3 386 aaPredicted RBP11.33□□□□□ -0.6
VTA1-203ENST00000452973 ZFR2Q9UPR6 939 aaKnown RBP11.33□□□□□ -0.6
VTA1-203ENST00000452973 WDR37Q9Y2I8 494 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms