RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 ZNF549Q6P9A3 640 aa18.59■□□□□ 0.57
HMGA1-205ENST00000447654 LAX1Q8IWV1 398 aa18.59■□□□□ 0.57
HMGA1-205ENST00000447654 B3GALNT2Q8NCR0 500 aa18.59■□□□□ 0.57
HMGA1-205ENST00000447654 OR10A6Q8NH74 314 aa18.59■□□□□ 0.57
HMGA1-205ENST00000447654 FANK1Q8TC84 345 aa18.59■□□□□ 0.57
HMGA1-205ENST00000447654 ZNF431Q8TF32 576 aaPredicted RBP18.59■□□□□ 0.57
HMGA1-205ENST00000447654 RADILQ96JH8 1075 aa18.59■□□□□ 0.57
HMGA1-205ENST00000447654 SAMD11Q96NU1 681 aa18.59■□□□□ 0.57
HMGA1-205ENST00000447654 TSGA13Q96PP4 275 aa18.59■□□□□ 0.57
HMGA1-205ENST00000447654 FERD3LQ96RJ6 166 aa18.59■□□□□ 0.57
HMGA1-205ENST00000447654 ZNF416Q9BWM5 594 aa18.59■□□□□ 0.57
HMGA1-205ENST00000447654 HEXA-AS1Q9H8Q6 139 aa18.59■□□□□ 0.57
HMGA1-205ENST00000447654 FOLH1BQ9HBA9 442 aa18.59■□□□□ 0.57
HMGA1-205ENST00000447654 KIF17Q9P2E2 1029 aa18.59■□□□□ 0.57
HMGA1-205ENST00000447654 SAMD4AQ9UPU9 718 aaKnown RBP18.59■□□□□ 0.57
HMGA1-205ENST00000447654 PCDHGA6Q9Y5G7 932 aa18.59■□□□□ 0.57
HMGA1-205ENST00000447654 MROH6A6NGR9 719 aa18.58■□□□□ 0.57
HMGA1-205ENST00000447654 MANSC4A6NHS7 340 aaPredicted RBP18.58■□□□□ 0.57
HMGA1-205ENST00000447654 OR4F21O95013 312 aa18.58■□□□□ 0.57
HMGA1-205ENST00000447654 PRKAR1AP10644 381 aa18.58■□□□□ 0.57
HMGA1-205ENST00000447654 CD1DP15813 335 aa18.58■□□□□ 0.57
HMGA1-205ENST00000447654 HOXA1P49639 335 aaPredicted RBP18.58■□□□□ 0.57
HMGA1-205ENST00000447654 SEMA3AQ14563 771 aa18.58■□□□□ 0.57
HMGA1-205ENST00000447654 CARD16Q5EG05 197 aa18.58■□□□□ 0.57
HMGA1-205ENST00000447654 OR4F3Q6IEY1 312 aa18.58■□□□□ 0.57
HMGA1-205ENST00000447654 TRIM69Q86WT6 500 aa18.58■□□□□ 0.57
HMGA1-205ENST00000447654 FAM131BQ86XD5 332 aa18.58■□□□□ 0.57
HMGA1-205ENST00000447654 MSLNLQ96KJ4 702 aa18.58■□□□□ 0.57
HMGA1-205ENST00000447654 NECTIN4Q96NY8 510 aa18.58■□□□□ 0.57
HMGA1-205ENST00000447654 TAPBPLQ9BX59 468 aa18.58■□□□□ 0.57
HMGA1-205ENST00000447654 TFB2MQ9H5Q4 396 aaKnown RBP18.58■□□□□ 0.57
HMGA1-205ENST00000447654 POPDC3Q9HBV1 291 aa18.58■□□□□ 0.57
HMGA1-205ENST00000447654 PCDHB16Q9NRJ7 776 aa18.58■□□□□ 0.57
HMGA1-205ENST00000447654 TMEM30AQ9NV96 361 aa18.58■□□□□ 0.57
HMGA1-205ENST00000447654 LYARQ9NX58 379 aaKnown RBP18.58■□□□□ 0.57
HMGA1-205ENST00000447654 Q9Y3F1 56 aa18.58■□□□□ 0.57
HMGA1-205ENST00000447654 HRH3Q9Y5N1 445 aa18.58■□□□□ 0.57
HMGA1-205ENST00000447654 UBA6A0AVT1 1052 aaPredicted RBP18.58■□□□□ 0.56
HMGA1-205ENST00000447654 FABP12A6NFH5 140 aa18.58■□□□□ 0.56
HMGA1-205ENST00000447654 TSC22D2O75157 780 aa18.58■□□□□ 0.56
HMGA1-205ENST00000447654 PTHP01270 115 aa18.58■□□□□ 0.56
HMGA1-205ENST00000447654 ARSBP15848 533 aa18.58■□□□□ 0.56
HMGA1-205ENST00000447654 MAOBP27338 520 aa18.58■□□□□ 0.56
HMGA1-205ENST00000447654 CCT3P49368 545 aaKnown RBP18.58■□□□□ 0.56
HMGA1-205ENST00000447654 CLCNKAP51800 687 aa18.58■□□□□ 0.56
HMGA1-205ENST00000447654 BTG1P62324 171 aa18.58■□□□□ 0.56
HMGA1-205ENST00000447654 CAP1Q01518 475 aa18.58■□□□□ 0.56
HMGA1-205ENST00000447654 ADIGQ0VDE8 80 aa18.58■□□□□ 0.56
HMGA1-205ENST00000447654 COX10Q12887 443 aa18.58■□□□□ 0.56
HMGA1-205ENST00000447654 CSTF3Q12996 717 aaKnown RBP18.58■□□□□ 0.56
HMGA1-205ENST00000447654 VEPH1Q14D04 833 aa18.58■□□□□ 0.56
HMGA1-205ENST00000447654 ZNF800Q2TB10 664 aaPredicted RBP eCLIP18.58■□□□□ 0.563e-6■□□□□ 10.5
HMGA1-205ENST00000447654 GPR158Q5T848 1215 aa18.58■□□□□ 0.56
HMGA1-205ENST00000447654 CEP68Q76N32 757 aa18.58■□□□□ 0.56
HMGA1-205ENST00000447654 CTU1Q7Z7A3 348 aaKnown RBP18.58■□□□□ 0.56
HMGA1-205ENST00000447654 CPA6Q8N4T0 437 aa18.58■□□□□ 0.56
HMGA1-205ENST00000447654 PAAF1Q9BRP4 392 aa18.58■□□□□ 0.56
HMGA1-205ENST00000447654 THUMPD3Q9BV44 507 aaKnown RBP18.58■□□□□ 0.56
HMGA1-205ENST00000447654 KATNAL1Q9BW62 490 aa18.58■□□□□ 0.56
HMGA1-205ENST00000447654 C1QTNF3Q9BXJ4 246 aa18.58■□□□□ 0.56
HMGA1-205ENST00000447654 CLEC4MQ9H2X3 399 aaPredicted RBP18.58■□□□□ 0.56
HMGA1-205ENST00000447654 MED9Q9NWA0 146 aa18.58■□□□□ 0.56
HMGA1-205ENST00000447654 EVLQ9UI08 416 aaPredicted RBP18.58■□□□□ 0.56
HMGA1-205ENST00000447654 KIF25Q9UIL4 384 aa18.58■□□□□ 0.56
HMGA1-205ENST00000447654 ST3GAL5Q9UNP4 418 aa18.58■□□□□ 0.56
HMGA1-205ENST00000447654 TIMM13Q9Y5L4 95 aaPredicted RBP18.58■□□□□ 0.56
HMGA1-205ENST00000447654 MIA3Q5JRA6 1907 aa18.57■□□□□ 0.56
HMGA1-205ENST00000447654 SCN10AQ9Y5Y9 1956 aa18.57■□□□□ 0.56
HMGA1-205ENST00000447654 MLYCDO95822 493 aa18.57■□□□□ 0.56
HMGA1-205ENST00000447654 SERPINA1P01009 418 aa18.57■□□□□ 0.56
HMGA1-205ENST00000447654 CSF2P04141 144 aa18.57■□□□□ 0.56
HMGA1-205ENST00000447654 PGRP06401 933 aa18.57■□□□□ 0.56
HMGA1-205ENST00000447654 FAM157BP0CG42 384 aa18.57■□□□□ 0.56
HMGA1-205ENST00000447654 PTBP1P26599 531 aaKnown RBP eCLIP18.57■□□□□ 0.56
HMGA1-205ENST00000447654 GGT2P36268 569 aa18.57■□□□□ 0.56
HMGA1-205ENST00000447654 HOXC5Q00444 222 aa18.57■□□□□ 0.56
HMGA1-205ENST00000447654 BTN1A1Q13410 526 aa18.57■□□□□ 0.56
HMGA1-205ENST00000447654 ANKS6Q68DC2 871 aa18.57■□□□□ 0.56
HMGA1-205ENST00000447654 BICRALQ6AI39 1079 aa18.57■□□□□ 0.56
HMGA1-205ENST00000447654 HSDL2Q6YN16 418 aa18.57■□□□□ 0.56
HMGA1-205ENST00000447654 DENND6BQ8NEG7 585 aa18.57■□□□□ 0.56
HMGA1-205ENST00000447654 SLC9A7Q96T83 725 aa18.57■□□□□ 0.56
HMGA1-205ENST00000447654 TSEN34Q9BSV6 310 aaKnown RBP18.57■□□□□ 0.56
HMGA1-205ENST00000447654 BARHL1Q9BZE3 327 aa18.57■□□□□ 0.56
HMGA1-205ENST00000447654 NT5DC2Q9H857 520 aa18.57■□□□□ 0.56
HMGA1-205ENST00000447654 MCCC2Q9HCC0 563 aa18.57■□□□□ 0.56
HMGA1-205ENST00000447654 EMC7Q9NPA0 242 aa18.57■□□□□ 0.56
HMGA1-205ENST00000447654 VAPAQ9P0L0 249 aa18.57■□□□□ 0.56
HMGA1-205ENST00000447654 RAB23Q9ULC3 237 aa18.57■□□□□ 0.56
HMGA1-205ENST00000447654 VPS9D1Q9Y2B5 631 aa18.57■□□□□ 0.56
HMGA1-205ENST00000447654 PCDHGB7Q9Y5F8 929 aa18.57■□□□□ 0.56
HMGA1-205ENST00000447654 KRBOX1C9JBD0 128 aa18.57■□□□□ 0.56
HMGA1-205ENST00000447654 ACSL4O60488 711 aa18.57■□□□□ 0.56
HMGA1-205ENST00000447654 TGM6O95932 706 aa18.57■□□□□ 0.56
HMGA1-205ENST00000447654 SLC2A3P11169 496 aa18.57■□□□□ 0.56
HMGA1-205ENST00000447654 AKR1A1P14550 325 aa18.57■□□□□ 0.56
HMGA1-205ENST00000447654 WARSP23381 471 aaKnown RBP18.57■□□□□ 0.56
HMGA1-205ENST00000447654 RPS19P39019 145 aaKnown RBP18.57■□□□□ 0.56
HMGA1-205ENST00000447654 PNPLA4P41247 253 aa18.57■□□□□ 0.56
HMGA1-205ENST00000447654 MAP2K6P52564 334 aa18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms