RNA–Protein interactions for RNA: ENST00000417137.5

SMARCB1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 3

Gene SMARCB1, Length 889 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-205ENST00000417137 PITHD1Q9GZP4 211 aaPredicted RBP22.04■■□□□ 1.12
SMARCB1-205ENST00000417137 CHST8Q9H2A9 424 aa22.04■■□□□ 1.12
SMARCB1-205ENST00000417137 PLAAQ9Y263 795 aa22.04■■□□□ 1.12
SMARCB1-205ENST00000417137 PCDHGA4Q9Y5G9 962 aa22.04■■□□□ 1.12
SMARCB1-205ENST00000417137 ANKRD12Q6UB98 2062 aa22.03■■□□□ 1.12
SMARCB1-205ENST00000417137 LCMT2O60294 686 aaKnown RBP22.03■■□□□ 1.12
SMARCB1-205ENST00000417137 KATNA1O75449 491 aa22.03■■□□□ 1.12
SMARCB1-205ENST00000417137 RAB40ALP0C0E4 278 aa22.03■■□□□ 1.12
SMARCB1-205ENST00000417137 EPB42P16452 691 aa22.03■■□□□ 1.12
SMARCB1-205ENST00000417137 BCL6P41182 706 aa22.03■■□□□ 1.12
SMARCB1-205ENST00000417137 AGTR2P50052 363 aa22.03■■□□□ 1.12
SMARCB1-205ENST00000417137 REEP5Q00765 189 aa22.03■■□□□ 1.12
SMARCB1-205ENST00000417137 MC1RQ01726 317 aa22.03■■□□□ 1.12
SMARCB1-205ENST00000417137 MEF2AQ02078 507 aaPredicted RBP22.03■■□□□ 1.12
SMARCB1-205ENST00000417137 DNASE1L3Q13609 305 aa22.03■■□□□ 1.12
SMARCB1-205ENST00000417137 RBBP5Q15291 538 aaKnown RBP22.03■■□□□ 1.12
SMARCB1-205ENST00000417137 PCBP2Q15366 365 aaKnown RBP eCLIP22.03■■□□□ 1.128e-7■■■■■ 29.4
SMARCB1-205ENST00000417137 ASPGQ86U10 573 aa22.03■■□□□ 1.12
SMARCB1-205ENST00000417137 SLC13A3Q8WWT9 602 aa22.03■■□□□ 1.12
SMARCB1-205ENST00000417137 SLC45A3Q96JT2 553 aa22.03■■□□□ 1.12
SMARCB1-205ENST00000417137 TMEM109Q9BVC6 243 aa22.03■■□□□ 1.12
SMARCB1-205ENST00000417137 AKIRIN1Q9H9L7 192 aaPredicted RBP22.03■■□□□ 1.12
SMARCB1-205ENST00000417137 GPN3Q9UHW5 284 aaPredicted RBP22.03■■□□□ 1.12
SMARCB1-205ENST00000417137 CDC14AQ9UNH5 594 aa22.03■■□□□ 1.12
SMARCB1-205ENST00000417137 RUVBL1Q9Y265 456 aaKnown RBP22.03■■□□□ 1.12
SMARCB1-205ENST00000417137 FARSAQ9Y285 508 aaKnown RBP22.03■■□□□ 1.12
SMARCB1-205ENST00000417137 PCDHGA6Q9Y5G7 932 aa22.03■■□□□ 1.12
SMARCB1-205ENST00000417137 SNRNP200O75643 2136 aaKnown RBP22.03■■□□□ 1.12
SMARCB1-205ENST00000417137 STX16-NPEPL1H3BU86 382 aa22.02■■□□□ 1.12
SMARCB1-205ENST00000417137 K7ENP7 123 aa22.02■■□□□ 1.12
SMARCB1-205ENST00000417137 STX16O14662 325 aa22.02■■□□□ 1.12
SMARCB1-205ENST00000417137 EFSO43281 561 aa22.02■■□□□ 1.12
SMARCB1-205ENST00000417137 GLRA3O75311 464 aa22.02■■□□□ 1.12
SMARCB1-205ENST00000417137 SLC35G6P0C7Q6 338 aa22.02■■□□□ 1.12
SMARCB1-205ENST00000417137 AHRP35869 848 aa22.02■■□□□ 1.12
SMARCB1-205ENST00000417137 PIK3CGP48736 1102 aa22.02■■□□□ 1.12
SMARCB1-205ENST00000417137 CXADRP78310 365 aa22.02■■□□□ 1.12
SMARCB1-205ENST00000417137 IRF8Q02556 426 aa22.02■■□□□ 1.12
SMARCB1-205ENST00000417137 LAPTM5Q13571 262 aa22.02■■□□□ 1.12
SMARCB1-205ENST00000417137 HIST2H2ACQ16777 129 aaPredicted RBP22.02■■□□□ 1.12
SMARCB1-205ENST00000417137 XKR6Q5GH73 641 aa22.02■■□□□ 1.12
SMARCB1-205ENST00000417137 ZNF385CQ66K41 422 aaPredicted RBP22.02■■□□□ 1.12
SMARCB1-205ENST00000417137 HIST2H2AA3Q6FI13 130 aa22.02■■□□□ 1.12
SMARCB1-205ENST00000417137 PRMT9Q6P2P2 845 aa22.02■■□□□ 1.12
SMARCB1-205ENST00000417137 INO80CQ6PI98 192 aaPredicted RBP22.02■■□□□ 1.12
SMARCB1-205ENST00000417137 C19orf48Q6RUI8 117 aa22.02■■□□□ 1.12
SMARCB1-205ENST00000417137 PTGR2Q8N8N7 351 aaPredicted RBP22.02■■□□□ 1.12
SMARCB1-205ENST00000417137 TRPV3Q8NET8 790 aa22.02■■□□□ 1.12
SMARCB1-205ENST00000417137 TTLQ8NG68 377 aa22.02■■□□□ 1.12
SMARCB1-205ENST00000417137 TM4SF19Q96DZ7 209 aa22.02■■□□□ 1.12
SMARCB1-205ENST00000417137 PHF21BQ96EK2 531 aa22.02■■□□□ 1.12
SMARCB1-205ENST00000417137 PTCD3Q96EY7 689 aaKnown RBP22.02■■□□□ 1.12
SMARCB1-205ENST00000417137 EFCAB11Q9BUY7 163 aa22.02■■□□□ 1.12
SMARCB1-205ENST00000417137 NT5DC2Q9H857 520 aa22.02■■□□□ 1.12
SMARCB1-205ENST00000417137 TMEM216Q9P0N5 145 aa22.02■■□□□ 1.12
SMARCB1-205ENST00000417137 IFT80Q9P2H3 777 aaPredicted RBP22.02■■□□□ 1.12
SMARCB1-205ENST00000417137 ZFP69BQ9UJL9 534 aa22.02■■□□□ 1.12
SMARCB1-205ENST00000417137 CCDC151A5D8V7 595 aa22.01■■□□□ 1.11
SMARCB1-205ENST00000417137 ZNF891A8MT65 544 aaPredicted RBP22.01■■□□□ 1.11
SMARCB1-205ENST00000417137 TK2O00142 265 aa22.01■■□□□ 1.11
SMARCB1-205ENST00000417137 VARSP26640 1264 aaKnown RBP22.01■■□□□ 1.11
SMARCB1-205ENST00000417137 SCTRP47872 440 aa22.01■■□□□ 1.11
SMARCB1-205ENST00000417137 SRSF6Q13247 344 aaKnown RBP22.01■■□□□ 1.11
SMARCB1-205ENST00000417137 PWP1Q13610 501 aa22.01■■□□□ 1.11
SMARCB1-205ENST00000417137 TBCCQ15814 346 aa22.01■■□□□ 1.11
SMARCB1-205ENST00000417137 HKDC1Q2TB90 917 aa22.01■■□□□ 1.11
SMARCB1-205ENST00000417137 NKAIN1Q4KMZ8 207 aa22.01■■□□□ 1.11
SMARCB1-205ENST00000417137 PAGE2BQ5JRK9 111 aa22.01■■□□□ 1.11
SMARCB1-205ENST00000417137 VN1R4Q7Z5H5 301 aa22.01■■□□□ 1.11
SMARCB1-205ENST00000417137 TEX9Q8N6V9 391 aa22.01■■□□□ 1.11
SMARCB1-205ENST00000417137 ZNF740Q8NDX6 193 aa22.01■■□□□ 1.11
SMARCB1-205ENST00000417137 MVB12AQ96EY5 273 aa22.01■■□□□ 1.11
SMARCB1-205ENST00000417137 CPNE5Q9HCH3 593 aa22.01■■□□□ 1.11
SMARCB1-205ENST00000417137 GEMIN8Q9NWZ8 242 aaKnown RBP22.01■■□□□ 1.11
SMARCB1-205ENST00000417137 LGALS13Q9UHV8 139 aa22.01■■□□□ 1.11
SMARCB1-205ENST00000417137 GRID1Q9ULK0 1009 aa22.01■■□□□ 1.11
SMARCB1-205ENST00000417137 TERTO14746 1132 aaKnown RBP22■■□□□ 1.11
SMARCB1-205ENST00000417137 PRPF4O43172 522 aaKnown RBP eCLIP22■■□□□ 1.11
SMARCB1-205ENST00000417137 KRT4P19013 534 aa22■■□□□ 1.11
SMARCB1-205ENST00000417137 GSTM2P28161 218 aa22■■□□□ 1.11
SMARCB1-205ENST00000417137 PTPN4P29074 926 aa22■■□□□ 1.11
SMARCB1-205ENST00000417137 CASP2P42575 452 aa22■■□□□ 1.11
SMARCB1-205ENST00000417137 RGS1Q08116 209 aa22■■□□□ 1.11
SMARCB1-205ENST00000417137 PCDH1Q08174 1060 aa22■■□□□ 1.11
SMARCB1-205ENST00000417137 CHIT1Q13231 466 aa22■■□□□ 1.11
SMARCB1-205ENST00000417137 FAM53BQ14153 422 aa22■■□□□ 1.11
SMARCB1-205ENST00000417137 SLBPQ14493 270 aaKnown RBP eCLIP22■■□□□ 1.11
SMARCB1-205ENST00000417137 COL28A1Q2UY09 1125 aa22■■□□□ 1.11
SMARCB1-205ENST00000417137 MLIPQ5VWP3 458 aa22■■□□□ 1.11
SMARCB1-205ENST00000417137 LCN10Q6JVE6 187 aa22■■□□□ 1.11
SMARCB1-205ENST00000417137 TMIGD1Q6UXZ0 262 aa22■■□□□ 1.11
SMARCB1-205ENST00000417137 SH2D5Q6ZV89 423 aa22■■□□□ 1.11
SMARCB1-205ENST00000417137 CROCCP2Q86T23 111 aa22■■□□□ 1.11
SMARCB1-205ENST00000417137 TMEM151AQ8N4L1 468 aa22■■□□□ 1.11
SMARCB1-205ENST00000417137 WDR34Q96EX3 536 aa22■■□□□ 1.11
SMARCB1-205ENST00000417137 SEC16BQ96JE7 1060 aa22■■□□□ 1.11
SMARCB1-205ENST00000417137 SYNPO2LQ9H987 977 aa22■■□□□ 1.11
SMARCB1-205ENST00000417137 ZNF304Q9HCX3 659 aa22■■□□□ 1.11
SMARCB1-205ENST00000417137 RRAGDQ9NQL2 400 aaPredicted RBP22■■□□□ 1.11
SMARCB1-205ENST00000417137 IL17BQ9UHF5 180 aa22■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms