RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 YKT6O15498 198 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 LRCH4O75427 683 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 FSHBP01225 129 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 CYP1A2P05177 515 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 KRT10P13645 584 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 PKMP14618 531 aaKnown RBP6.25□□□□□ -1.41
USP40-202ENST00000409945 ARHGAP25P42331 645 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 ARRB1P49407 418 aaPredicted RBP6.25□□□□□ -1.41
USP40-202ENST00000409945 SUOXP51687 545 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 CCNHP51946 323 aaPredicted RBP6.25□□□□□ -1.41
USP40-202ENST00000409945 ADPRHP54922 357 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 OVGP1Q12889 678 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 SEMA3AQ14563 771 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 RFTN1Q14699 578 aaPredicted RBP6.25□□□□□ -1.41
USP40-202ENST00000409945 GPR68Q15743 365 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 FAM72AQ5TYM5 149 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 TCEAL6Q6IPX3 200 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 FAM72DQ6L9T8 149 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 ZNF66Q6ZN08 573 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 ERN2Q76MJ5 926 aaKnown RBP6.25□□□□□ -1.41
USP40-202ENST00000409945 FAM72BQ86X60 149 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 DNAAF5Q86Y56 855 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 PYROXD2Q8N2H3 581 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 MINDY1Q8N5J2 469 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 KCTD6Q8NC69 237 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 OR2A12Q8NGT7 310 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 TCEAL3Q969E4 200 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 BIRC7Q96CA5 298 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 PSMB7Q99436 277 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 MAK16Q9BXY0 300 aaKnown RBP6.25□□□□□ -1.41
USP40-202ENST00000409945 NHEJ1Q9H9Q4 299 aaPredicted RBP6.25□□□□□ -1.41
USP40-202ENST00000409945 STAU2Q9NUL3 570 aaKnown RBP eCLIP6.25□□□□□ -1.41
USP40-202ENST00000409945 ARL8BQ9NVJ2 186 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 TRMT1Q9NXH9 659 aaKnown RBP6.25□□□□□ -1.41
USP40-202ENST00000409945 RCOR3Q9P2K3 495 aaPredicted RBP6.25□□□□□ -1.41
USP40-202ENST00000409945 CAMK2AQ9UQM7 478 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 A0A1W2PPH5 198 aa6.24□□□□□ -1.41
USP40-202ENST00000409945 A0A1W2PQ67 120 aa6.24□□□□□ -1.41
USP40-202ENST00000409945 SAC3D1A6NKF1 404 aa6.24□□□□□ -1.41
USP40-202ENST00000409945 PRAMEF26H0Y7S4 382 aa6.24□□□□□ -1.41
USP40-202ENST00000409945 I6L893 689 aaPredicted RBP6.24□□□□□ -1.41
USP40-202ENST00000409945 PLRG1O43660 514 aaKnown RBP6.24□□□□□ -1.41
USP40-202ENST00000409945 PALMO75781 387 aa6.24□□□□□ -1.41
USP40-202ENST00000409945 CYP4B1P13584 511 aa6.24□□□□□ -1.41
USP40-202ENST00000409945 CEACAM1P13688 526 aa6.24□□□□□ -1.41
USP40-202ENST00000409945 ERCC2P18074 760 aa6.24□□□□□ -1.41
USP40-202ENST00000409945 EDN2P20800 178 aa6.24□□□□□ -1.41
USP40-202ENST00000409945 CSRP1P21291 193 aaKnown RBP6.24□□□□□ -1.41
USP40-202ENST00000409945 CD38P28907 300 aa6.24□□□□□ -1.41
USP40-202ENST00000409945 AKT2P31751 481 aa6.24□□□□□ -1.41
USP40-202ENST00000409945 MAN1A1P33908 653 aa6.24□□□□□ -1.41
USP40-202ENST00000409945 GJC1P36383 396 aa6.24□□□□□ -1.41
USP40-202ENST00000409945 HSPA9P38646 679 aaKnown RBP6.24□□□□□ -1.41
USP40-202ENST00000409945 CDH6P55285 790 aa6.24□□□□□ -1.41
USP40-202ENST00000409945 POLR2LP62875 67 aaKnown RBP6.24□□□□□ -1.41
USP40-202ENST00000409945 RPS21P63220 83 aaKnown RBP6.24□□□□□ -1.41
USP40-202ENST00000409945 ARF5P84085 180 aa6.24□□□□□ -1.41
USP40-202ENST00000409945 OGDHQ02218 1023 aa6.24□□□□□ -1.41
USP40-202ENST00000409945 ELP6Q0PNE2 266 aa6.24□□□□□ -1.41
USP40-202ENST00000409945 CNTN1Q12860 1018 aa6.24□□□□□ -1.41
USP40-202ENST00000409945 GRIK2Q13002 908 aa6.24□□□□□ -1.41
USP40-202ENST00000409945 SGCGQ13326 291 aa6.24□□□□□ -1.41
USP40-202ENST00000409945 ZNF235Q14590 738 aa6.24□□□□□ -1.41
USP40-202ENST00000409945 PDK2Q15119 407 aa6.24□□□□□ -1.41
USP40-202ENST00000409945 DPYSL2Q16555 572 aa6.24□□□□□ -1.41
USP40-202ENST00000409945 FAM69AQ5T7M9 428 aa6.24□□□□□ -1.41
USP40-202ENST00000409945 KIAA1161Q6NSJ0 714 aa6.24□□□□□ -1.41
USP40-202ENST00000409945 TRIM69Q86WT6 500 aa6.24□□□□□ -1.41
USP40-202ENST00000409945 TMEM139Q8IV31 216 aa6.24□□□□□ -1.41
USP40-202ENST00000409945 CCDC170Q8IYT3 715 aa6.24□□□□□ -1.41
USP40-202ENST00000409945 NDUFAF2Q8N183 169 aa6.24□□□□□ -1.41
USP40-202ENST00000409945 ATPAF2Q8N5M1 289 aa6.24□□□□□ -1.41
USP40-202ENST00000409945 AADATQ8N5Z0 425 aa6.24□□□□□ -1.41
USP40-202ENST00000409945 TC2NQ8N9U0 490 aa6.24□□□□□ -1.41
USP40-202ENST00000409945 OR52K2Q8NGK3 314 aa6.24□□□□□ -1.41
USP40-202ENST00000409945 TRAF3IP1Q8TDR0 691 aaPredicted RBP6.24□□□□□ -1.41
USP40-202ENST00000409945 SERAC1Q96JX3 654 aa6.24□□□□□ -1.41
USP40-202ENST00000409945 ZNF599Q96NL3 588 aa6.24□□□□□ -1.41
USP40-202ENST00000409945 FUZQ9BT04 418 aa6.24□□□□□ -1.41
USP40-202ENST00000409945 HEMGNQ9BXL5 484 aa6.24□□□□□ -1.41
USP40-202ENST00000409945 CALN1Q9BXU9 219 aa6.24□□□□□ -1.41
USP40-202ENST00000409945 TM6SF2Q9BZW4 377 aa6.24□□□□□ -1.41
USP40-202ENST00000409945 GAREM1Q9H706 876 aa6.24□□□□□ -1.41
USP40-202ENST00000409945 TM9SF3Q9HD45 589 aa6.24□□□□□ -1.41
USP40-202ENST00000409945 GDF3Q9NR23 364 aa6.24□□□□□ -1.41
USP40-202ENST00000409945 PCDHB16Q9NRJ7 776 aa6.24□□□□□ -1.41
USP40-202ENST00000409945 GPATCH2LQ9NWQ4 482 aa6.24□□□□□ -1.41
USP40-202ENST00000409945 NLKQ9UBE8 527 aa6.24□□□□□ -1.41
USP40-202ENST00000409945 SBDSQ9Y3A5 250 aaKnown RBP eCLIP6.24□□□□□ -1.41
USP40-202ENST00000409945 CEP250Q9BV73 2442 aa6.24□□□□□ -1.41
USP40-202ENST00000409945 A0A0A0MQY5 61 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 MCIDASD6RGH6 385 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 POC1B-GALNT4F8VUJ3 575 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 K7ERQ8 282 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 SMAD6O43541 496 aaKnown RBP6.23□□□□□ -1.41
USP40-202ENST00000409945 ZMPSTE24O75844 475 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 TMCC1O94876 653 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 PROSCO94903 275 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 ZNF883P0CG24 379 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 CA4P22748 312 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms