RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 GUCY1B2O75343 617 aa20.27■□□□□ 0.83
CTCF-202ENST00000401394 SEMG1P04279 462 aa20.27■□□□□ 0.83
CTCF-202ENST00000401394 AMD1P17707 334 aa20.27■□□□□ 0.83
CTCF-202ENST00000401394 NEK10Q6ZWH5 1172 aa20.27■□□□□ 0.83
CTCF-202ENST00000401394 USP43Q70EL4 1123 aa20.27■□□□□ 0.83
CTCF-202ENST00000401394 NRARPQ7Z6K4 114 aa20.27■□□□□ 0.83
CTCF-202ENST00000401394 OR52E4Q8NGH9 312 aa20.27■□□□□ 0.83
CTCF-202ENST00000401394 BCL7CQ8WUZ0 217 aaPredicted RBP20.27■□□□□ 0.83
CTCF-202ENST00000401394 UROC1Q96N76 676 aa20.27■□□□□ 0.83
CTCF-202ENST00000401394 EHD3Q9NZN3 535 aa20.27■□□□□ 0.83
CTCF-202ENST00000401394 TRPS1Q9UHF7 1281 aa20.27■□□□□ 0.83
CTCF-202ENST00000401394 DNMT3AQ9Y6K1 912 aaPredicted RBP20.27■□□□□ 0.83
CTCF-202ENST00000401394 NPIPB15A6NHN6 443 aaPredicted RBP20.26■□□□□ 0.83
CTCF-202ENST00000401394 DUSP11O75319 330 aaKnown RBP20.26■□□□□ 0.83
CTCF-202ENST00000401394 CLDN11O75508 207 aa20.26■□□□□ 0.83
CTCF-202ENST00000401394 CKMT1AP12532 417 aa20.26■□□□□ 0.83
CTCF-202ENST00000401394 POU1F1P28069 291 aa20.26■□□□□ 0.83
CTCF-202ENST00000401394 HKDC1Q2TB90 917 aa20.26■□□□□ 0.83
CTCF-202ENST00000401394 IER5LQ5T953 404 aa20.26■□□□□ 0.83
CTCF-202ENST00000401394 SLC46A3Q7Z3Q1 461 aa20.26■□□□□ 0.83
CTCF-202ENST00000401394 DNAJC22Q8N4W6 341 aa20.26■□□□□ 0.83
CTCF-202ENST00000401394 GABARAPL1Q9H0R8 117 aa20.26■□□□□ 0.83
CTCF-202ENST00000401394 MS4A12Q9NXJ0 267 aa20.26■□□□□ 0.83
CTCF-202ENST00000401394 GLYATL1P3A0A0U1RQE8 302 aa20.26■□□□□ 0.83
CTCF-202ENST00000401394 ILVBLA1L0T0 632 aa20.26■□□□□ 0.83
CTCF-202ENST00000401394 GLTPD2A6NH11 291 aa20.26■□□□□ 0.83
CTCF-202ENST00000401394 KIAA0513O60268 411 aa20.26■□□□□ 0.83
CTCF-202ENST00000401394 EPN2O95208 641 aa20.26■□□□□ 0.83
CTCF-202ENST00000401394 CXCR4P61073 352 aa20.26■□□□□ 0.83
CTCF-202ENST00000401394 CCSMST1Q4G0I0 132 aa20.26■□□□□ 0.83
CTCF-202ENST00000401394 ATP13A5Q4VNC0 1218 aa20.26■□□□□ 0.83
CTCF-202ENST00000401394 FAHD1Q6P587 224 aa20.26■□□□□ 0.83
CTCF-202ENST00000401394 OR8H2Q8N162 312 aa20.26■□□□□ 0.83
CTCF-202ENST00000401394 STK40Q8N2I9 435 aa20.26■□□□□ 0.83
CTCF-202ENST00000401394 IL17RDQ8NFM7 739 aa20.26■□□□□ 0.83
CTCF-202ENST00000401394 OR5AK3PQ8NH89 298 aa20.26■□□□□ 0.83
CTCF-202ENST00000401394 CCM2Q9BSQ5 444 aa20.26■□□□□ 0.83
CTCF-202ENST00000401394 MUTYHQ9UIF7 546 aa20.26■□□□□ 0.83
CTCF-202ENST00000401394 N6AMT1Q9Y5N5 214 aa20.26■□□□□ 0.83
CTCF-202ENST00000401394 SAP18O00422 153 aaKnown RBP20.25■□□□□ 0.83
CTCF-202ENST00000401394 CELF2O95319 508 aaKnown RBP20.25■□□□□ 0.83
CTCF-202ENST00000401394 HLA-EP13747 358 aa20.25■□□□□ 0.83
CTCF-202ENST00000401394 NKX3-2P78367 333 aa20.25■□□□□ 0.83
CTCF-202ENST00000401394 CHIT1Q13231 466 aa20.25■□□□□ 0.83
CTCF-202ENST00000401394 MRPL58Q14197 206 aaKnown RBP20.25■□□□□ 0.83
CTCF-202ENST00000401394 TSTQ16762 297 aaKnown RBP20.25■□□□□ 0.83
CTCF-202ENST00000401394 CBLL1Q75N03 491 aa20.25■□□□□ 0.83
CTCF-202ENST00000401394 LILRA3Q8N6C8 439 aaPredicted RBP20.25■□□□□ 0.83
CTCF-202ENST00000401394 KIAA1958Q8N8K9 716 aa20.25■□□□□ 0.83
CTCF-202ENST00000401394 MINDY2Q8NBR6 621 aa20.25■□□□□ 0.83
CTCF-202ENST00000401394 TTYH2Q9BSA4 534 aa20.25■□□□□ 0.83
CTCF-202ENST00000401394 MMP27Q9H306 513 aa20.25■□□□□ 0.83
CTCF-202ENST00000401394 DDX28Q9NUL7 540 aaKnown RBP20.25■□□□□ 0.83
CTCF-202ENST00000401394 TMEM45AQ9NWC5 275 aa20.25■□□□□ 0.83
CTCF-202ENST00000401394 PCDHB1Q9Y5F3 818 aa20.25■□□□□ 0.83
CTCF-202ENST00000401394 SCN10AQ9Y5Y9 1956 aa20.25■□□□□ 0.83
CTCF-202ENST00000401394 KCNE1BA0A087WTH5 132 aa20.25■□□□□ 0.83
CTCF-202ENST00000401394 PCDH17O14917 1159 aa20.25■□□□□ 0.83
CTCF-202ENST00000401394 RGS5O15539 181 aa20.25■□□□□ 0.83
CTCF-202ENST00000401394 ANXA5P08758 320 aa20.25■□□□□ 0.83
CTCF-202ENST00000401394 ETFAP13804 333 aa20.25■□□□□ 0.83
CTCF-202ENST00000401394 DUOXA1Q1HG43 343 aa20.25■□□□□ 0.83
CTCF-202ENST00000401394 LEXMQ3ZCV2 418 aa20.25■□□□□ 0.83
CTCF-202ENST00000401394 MFSD14CQ5VZR4 134 aa20.25■□□□□ 0.83
CTCF-202ENST00000401394 STX19Q8N4C7 294 aa20.25■□□□□ 0.83
CTCF-202ENST00000401394 TP53INP1Q96A56 240 aa20.25■□□□□ 0.83
CTCF-202ENST00000401394 HRASLS5Q96KN8 279 aa20.25■□□□□ 0.83
CTCF-202ENST00000401394 NECTIN4Q96NY8 510 aa20.25■□□□□ 0.83
CTCF-202ENST00000401394 TSEN34Q9BSV6 310 aaKnown RBP20.25■□□□□ 0.83
CTCF-202ENST00000401394 SLC32A1Q9H598 525 aa20.25■□□□□ 0.83
CTCF-202ENST00000401394 CPNE5Q9HCH3 593 aa20.25■□□□□ 0.83
CTCF-202ENST00000401394 EXOSC4Q9NPD3 245 aaKnown RBP20.25■□□□□ 0.83
CTCF-202ENST00000401394 PNMA8CA0A1B0GUJ8 204 aa20.25■□□□□ 0.83
CTCF-202ENST00000401394 FHP07954 510 aa20.25■□□□□ 0.83
CTCF-202ENST00000401394 ZDHHC11BP0C7U3 371 aa20.25■□□□□ 0.83
CTCF-202ENST00000401394 PSMA3P25788 255 aa20.25■□□□□ 0.83
CTCF-202ENST00000401394 SOX3P41225 446 aa20.25■□□□□ 0.83
CTCF-202ENST00000401394 CDC20Q12834 499 aa20.25■□□□□ 0.83
CTCF-202ENST00000401394 NELL1Q92832 810 aa20.25■□□□□ 0.83
CTCF-202ENST00000401394 IL4I1Q96RQ9 567 aa20.25■□□□□ 0.83
CTCF-202ENST00000401394 PRRG3Q9BZD7 231 aa20.25■□□□□ 0.83
CTCF-202ENST00000401394 TRIM39Q9HCM9 518 aa20.25■□□□□ 0.83
CTCF-202ENST00000401394 NDUFAF4Q9P032 175 aa20.25■□□□□ 0.83
CTCF-202ENST00000401394 CFAP20Q9Y6A4 193 aaKnown RBP20.25■□□□□ 0.83
CTCF-202ENST00000401394 ZNF840PA6NDX5 716 aa20.24■□□□□ 0.83
CTCF-202ENST00000401394 TNFRSF11BO00300 401 aa20.24■□□□□ 0.83
CTCF-202ENST00000401394 DYRK3O43781 588 aa20.24■□□□□ 0.83
CTCF-202ENST00000401394 C9P02748 559 aa20.24■□□□□ 0.83
CTCF-202ENST00000401394 AOAHP28039 575 aa20.24■□□□□ 0.83
CTCF-202ENST00000401394 RGS6P49758 472 aa20.24■□□□□ 0.83
CTCF-202ENST00000401394 FADDQ13158 208 aa20.24■□□□□ 0.83
CTCF-202ENST00000401394 DMC1Q14565 340 aa20.24■□□□□ 0.83
CTCF-202ENST00000401394 EXOC3L2Q2M3D2 409 aa20.24■□□□□ 0.83
CTCF-202ENST00000401394 EIF3MQ7L2H7 374 aaKnown RBP20.24■□□□□ 0.83
CTCF-202ENST00000401394 GALNT13Q8IUC8 556 aa20.24■□□□□ 0.83
CTCF-202ENST00000401394 ADPRHL2Q9NX46 363 aa20.24■□□□□ 0.83
CTCF-202ENST00000401394 MARCH5Q9NX47 278 aa20.24■□□□□ 0.83
CTCF-202ENST00000401394 SLC45A1Q9Y2W3 748 aa20.24■□□□□ 0.83
CTCF-202ENST00000401394 IFT52Q9Y366 437 aa20.24■□□□□ 0.83
CTCF-202ENST00000401394 LYVE1Q9Y5Y7 322 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms