RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 MFSD1Q9H3U5 465 aa9.04□□□□□ -0.96
COL28A1-201ENST00000399429 PDZD7Q9H5P4 517 aa9.04□□□□□ -0.96
COL28A1-201ENST00000399429 FOLH1BQ9HBA9 442 aa9.04□□□□□ -0.96
COL28A1-201ENST00000399429 MCCC2Q9HCC0 563 aa9.04□□□□□ -0.96
COL28A1-201ENST00000399429 CTPS2Q9NRF8 586 aa9.04□□□□□ -0.96
COL28A1-201ENST00000399429 NUDT15Q9NV35 164 aa9.04□□□□□ -0.96
COL28A1-201ENST00000399429 TMEM39AQ9NV64 488 aa9.04□□□□□ -0.96
COL28A1-201ENST00000399429 CIB4A0PJX0 185 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 UPK3BL1B0FP48 263 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 ZNF487B1APH4 448 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 UPK3BL2E5RIL1 263 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 EEF1E1O43324 174 aaKnown RBP9.03□□□□□ -0.96
COL28A1-201ENST00000399429 UGT2B17O75795 530 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 IFNW1P05000 195 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 ITPKAP23677 461 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 LHX1P48742 406 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 KCNQ1P51787 676 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 CLCNKBP51801 687 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 DSTNP60981 165 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 GRIK2Q13002 908 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 NDUFAF6Q330K2 333 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 SYTL3Q4VX76 610 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 PYCR3Q53H96 274 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 ZMAT1Q5H9K5 638 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 HAGHLQ6PII5 290 aaPredicted RBP9.03□□□□□ -0.96
COL28A1-201ENST00000399429 DPP10Q8N608 796 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 GGHQ92820 318 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 PSMG2Q969U7 264 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 L3HYPDHQ96EM0 354 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 ASB8Q9H765 288 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 DCAF13Q9NV06 445 aaKnown RBP9.03□□□□□ -0.96
COL28A1-201ENST00000399429 B3GNT2Q9NY97 397 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 OR2A25A4D2G3 310 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 OR1I1O60431 355 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 STK16O75716 305 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 CDK1P06493 297 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 FGF4P08620 206 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 TGFB3P10600 412 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 TNFRSF1BP20333 461 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 NUDT1P36639 197 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 SLC10A7Q0GE19 358 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 ABRAXAS2Q15018 415 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 TRIM40Q6P9F5 258 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 PTRH1Q86Y79 214 aaKnown RBP9.03□□□□□ -0.96
COL28A1-201ENST00000399429 B3GNT7Q8NFL0 401 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 BEST4Q8NFU0 473 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 TRIB2Q92519 343 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 ZNF285Q96NJ3 590 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 ALOXE3Q9BYJ1 711 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 POLR2J3Q9H1A7 115 aaKnown RBP9.03□□□□□ -0.96
COL28A1-201ENST00000399429 NSUN3Q9H649 340 aaKnown RBP9.03□□□□□ -0.96
COL28A1-201ENST00000399429 MED11Q9P086 117 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 OSGIN1Q9UJX0 560 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 FZD4Q9ULV1 537 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 DHRS7Q9Y394 339 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 TOPAZ1Q8N9V7 1692 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 A0A1B0GVC2 190 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 A6NIN4 97 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 DCLK1O15075 740 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 PEX10O60683 326 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 ESR1P03372 595 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 EDN1P05305 212 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 CTSHP09668 335 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 CLEC2LP0C7M8 214 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 ADORA3P0DMS8 318 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 LPOP22079 712 aaPredicted RBP9.03□□□□□ -0.96
COL28A1-201ENST00000399429 LHCGRP22888 699 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 AVPR1BP47901 424 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 MASP1P48740 699 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 DAPP51397 102 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 TARDBPQ13148 414 aaKnown RBP eCLIP9.03□□□□□ -0.96
COL28A1-201ENST00000399429 DSG2Q14126 1118 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 TBCEQ15813 527 aaPredicted RBP9.03□□□□□ -0.96
COL28A1-201ENST00000399429 ATAT1Q5SQI0 421 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 DCST1Q5T197 706 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 SPOUT1Q5T280 376 aaKnown RBP9.03□□□□□ -0.96
COL28A1-201ENST00000399429 CNIH2Q6PI25 160 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 SLC46A3Q7Z3Q1 461 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 SPAG16Q8N0X2 631 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 SLC5A8Q8N695 610 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 LRRC52Q8N7C0 313 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 TNFAIP8L1Q8WVP5 186 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 TADA1Q96BN2 335 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 TMEM80Q96HE8 168 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 ZNF583Q96ND8 569 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 MAN2B2Q9Y2E5 1009 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 CNTNAP1P78357 1384 aa9.03□□□□□ -0.96
COL28A1-201ENST00000399429 GABRDO14764 452 aa9.02□□□□□ -0.96
COL28A1-201ENST00000399429 CLDN9O95484 217 aa9.02□□□□□ -0.96
COL28A1-201ENST00000399429 S1PR4O95977 384 aa9.02□□□□□ -0.96
COL28A1-201ENST00000399429 SBK3P0C264 359 aa9.02□□□□□ -0.96
COL28A1-201ENST00000399429 APEX1P27695 318 aaKnown RBP9.02□□□□□ -0.96
COL28A1-201ENST00000399429 DCCP43146 1447 aa9.02□□□□□ -0.96
COL28A1-201ENST00000399429 GZMKP49863 264 aa9.02□□□□□ -0.96
COL28A1-201ENST00000399429 CAV3P56539 151 aa9.02□□□□□ -0.96
COL28A1-201ENST00000399429 MBTD1Q05BQ5 628 aa9.02□□□□□ -0.96
COL28A1-201ENST00000399429 TMEM132BQ14DG7 1078 aa9.02□□□□□ -0.96
COL28A1-201ENST00000399429 NTRK2Q16620 822 aa9.02□□□□□ -0.96
COL28A1-201ENST00000399429 DUSP7Q16829 419 aa9.02□□□□□ -0.96
COL28A1-201ENST00000399429 CEP68Q76N32 757 aa9.02□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms