RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 AKTIPQ9H8T0 292 aa11.02□□□□□ -0.65
TTC28-201ENST00000397906 SCO2O43819 266 aa11.02□□□□□ -0.65
TTC28-201ENST00000397906 MPZL2O60487 215 aa11.02□□□□□ -0.65
TTC28-201ENST00000397906 TIMP1P01033 207 aa11.02□□□□□ -0.65
TTC28-201ENST00000397906 ECH1Q13011 328 aa11.02□□□□□ -0.65
TTC28-201ENST00000397906 HSDL2Q6YN16 418 aa11.02□□□□□ -0.65
TTC28-201ENST00000397906 LAPTM4BQ86VI4 370 aa11.02□□□□□ -0.65
TTC28-201ENST00000397906 FAM234BA2RU67 622 aa11.02□□□□□ -0.65
TTC28-201ENST00000397906 PGLSO95336 258 aa11.02□□□□□ -0.65
TTC28-201ENST00000397906 ECHS1P30084 290 aa11.02□□□□□ -0.65
TTC28-201ENST00000397906 PTGIRP43119 386 aa11.02□□□□□ -0.65
TTC28-201ENST00000397906 DPY19L3Q6ZPD9 716 aa11.02□□□□□ -0.65
TTC28-201ENST00000397906 MUC13Q9H3R2 512 aa11.02□□□□□ -0.65
TTC28-201ENST00000397906 PRTFDC1Q9NRG1 225 aa11.02□□□□□ -0.65
TTC28-201ENST00000397906 GRHPRQ9UBQ7 328 aa11.02□□□□□ -0.65
TTC28-201ENST00000397906 SPEF2Q9C093 1822 aa11.02□□□□□ -0.65
TTC28-201ENST00000397906 E7ENX8 843 aa11.02□□□□□ -0.65
TTC28-201ENST00000397906 MAN2B1O00754 1011 aa11.02□□□□□ -0.65
TTC28-201ENST00000397906 PIGRP01833 764 aa11.02□□□□□ -0.65
TTC28-201ENST00000397906 OR12D2P58182 307 aa11.02□□□□□ -0.65
TTC28-201ENST00000397906 ERVK-8P63133 956 aa11.02□□□□□ -0.65
TTC28-201ENST00000397906 GPRIN1Q7Z2K8 1008 aa11.02□□□□□ -0.65
TTC28-201ENST00000397906 PNLDC1Q8NA58 520 aaKnown RBP11.02□□□□□ -0.65
TTC28-201ENST00000397906 ANKRD27Q96NW4 1050 aa11.02□□□□□ -0.65
TTC28-201ENST00000397906 USP29Q9HBJ7 922 aa11.02□□□□□ -0.65
TTC28-201ENST00000397906 TRIM39Q9HCM9 518 aa11.02□□□□□ -0.65
TTC28-201ENST00000397906 PIRO00625 290 aa11.02□□□□□ -0.65
TTC28-201ENST00000397906 ITM2AO43736 263 aa11.02□□□□□ -0.65
TTC28-201ENST00000397906 ACSL1P33121 698 aa11.02□□□□□ -0.65
TTC28-201ENST00000397906 VBP1P61758 197 aa11.02□□□□□ -0.65
TTC28-201ENST00000397906 ADAM8P78325 824 aa11.02□□□□□ -0.65
TTC28-201ENST00000397906 RUNX3Q13761 415 aa11.02□□□□□ -0.65
TTC28-201ENST00000397906 C1orf216Q8TAB5 229 aa11.02□□□□□ -0.65
TTC28-201ENST00000397906 FAXDC2Q96IV6 333 aa11.02□□□□□ -0.65
TTC28-201ENST00000397906 PTCHD1Q96NR3 888 aa11.02□□□□□ -0.65
TTC28-201ENST00000397906 ORAI3Q9BRQ5 295 aa11.02□□□□□ -0.65
TTC28-201ENST00000397906 ING4Q9UNL4 249 aa11.02□□□□□ -0.65
TTC28-201ENST00000397906 GP1BBP13224 206 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 AGTR2P50052 363 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 TRPV1Q8NER1 839 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 OR10T2Q8NGX3 314 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 TNFAIP8L1Q8WVP5 186 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 FAM3CQ92520 227 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 PNPLA2Q96AD5 504 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 PCYT2Q99447 389 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 POLR2J3Q9H1A7 115 aaKnown RBP11.01□□□□□ -0.65
TTC28-201ENST00000397906 MEAF6Q9HAF1 191 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 SH3D21A4FU49 640 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 MTTPP55157 894 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 LASP1Q14847 261 aaKnown RBP11.01□□□□□ -0.65
TTC28-201ENST00000397906 SWI5Q1ZZU3 235 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 ZNF101Q8IZC7 436 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 EPYCQ99645 322 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 EBF4Q9BQW3 602 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 GPN1Q9HCN4 374 aaPredicted RBP11.01□□□□□ -0.65
TTC28-201ENST00000397906 PARPBPQ9NWS1 579 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 A6NL46 340 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 PRAMEF11O60813 436 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 AAGABQ6PD74 315 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 ZZZ3Q8IYH5 903 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 GFM1Q96RP9 751 aaKnown RBP11.01□□□□□ -0.65
TTC28-201ENST00000397906 SIX4Q9UIU6 781 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 SLC35F4A4IF30 521 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 GLDCP23378 1020 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 SOX4Q06945 474 aaPredicted RBP11.01□□□□□ -0.65
TTC28-201ENST00000397906 DHCR24Q15392 516 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 GALNT10Q86SR1 603 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 GLB1L3Q8NCI6 653 aaPredicted RBP11.01□□□□□ -0.65
TTC28-201ENST00000397906 ZFP3Q96NJ6 502 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 NLE1Q9NVX2 485 aaPredicted RBP11.01□□□□□ -0.65
TTC28-201ENST00000397906 LOC100509620A0A075B734 347 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 CLIC1O00299 241 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 GATBO75879 557 aaKnown RBP11.01□□□□□ -0.65
TTC28-201ENST00000397906 AHSGP02765 367 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 GRIA2P42262 883 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 RAB2AP61019 212 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 DPY19L1Q2PZI1 675 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 AMBNQ9NP70 447 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 ITGA5P08648 1049 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 BCAP31P51572 246 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 SPIN3Q5JUX0 258 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 DCAF12L1Q5VU92 463 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 CHRDL2Q6WN34 429 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 SERINC5Q86VE9 423 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 HCFC1R1Q9NWW0 138 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 ARFGEF2Q9Y6D5 1785 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 SOX1O00570 391 aaPredicted RBP11.01□□□□□ -0.65
TTC28-201ENST00000397906 SMAD9O15198 467 aaKnown RBP11.01□□□□□ -0.65
TTC28-201ENST00000397906 MID1O15344 667 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 SYNGR4O95473 234 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 CSTBP04080 98 aaKnown RBP11.01□□□□□ -0.65
TTC28-201ENST00000397906 HCKP08631 526 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 NTHL1P78549 312 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 RHBDD1Q8TEB9 315 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 PHF12Q96QT6 1004 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 OR1F2PQ96R84 312 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 IL4I1Q96RQ9 567 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 ASPNQ9BXN1 380 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 FAM72CH0Y354 149 aa11.01□□□□□ -0.65
TTC28-201ENST00000397906 FAM72AQ5TYM5 149 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms