RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 TRPC1P48995 793 aa12.9□□□□□ -0.34
CCDC3-202ENST00000378839 ESRRGP62508 458 aa12.9□□□□□ -0.34
CCDC3-202ENST00000378839 RAPSNQ13702 412 aa12.9□□□□□ -0.34
CCDC3-202ENST00000378839 C9orf64Q5T6V5 341 aa12.9□□□□□ -0.34
CCDC3-202ENST00000378839 ADHFE1Q8IWW8 467 aa12.9□□□□□ -0.34
CCDC3-202ENST00000378839 LRRC56Q8IYG6 542 aaPredicted RBP12.9□□□□□ -0.34
CCDC3-202ENST00000378839 BADQ92934 168 aa12.9□□□□□ -0.34
CCDC3-202ENST00000378839 ING2Q9H160 280 aa12.9□□□□□ -0.34
CCDC3-202ENST00000378839 IL1RAPQ9NPH3 570 aa12.9□□□□□ -0.34
CCDC3-202ENST00000378839 TRANK1O15050 2925 aa12.9□□□□□ -0.35
CCDC3-202ENST00000378839 PABPN1LA6NDY0 278 aaKnown RBP12.89□□□□□ -0.35
CCDC3-202ENST00000378839 CCNDBP1O95273 360 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 TFPTP0C1Z6 253 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 ADH5P11766 374 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 HNRNPFP52597 415 aaKnown RBP12.89□□□□□ -0.35
CCDC3-202ENST00000378839 C21orf58P58505 322 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 TBPL1P62380 186 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 MC1RQ01726 317 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 PCDH1Q08174 1060 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 MPEG1Q2M385 716 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 ZNF691Q5VV52 312 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 DHRS4L2Q6PKH6 230 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 FAM83HQ6ZRV2 1179 aaPredicted RBP12.89□□□□□ -0.35
CCDC3-202ENST00000378839 ARMCX6Q7L4S7 300 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 TMPRSS11BQ86T26 416 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 SYNPOQ8N3V7 929 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 MIPOL1Q8TD10 442 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 RHNO1Q9BSD3 238 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 TMEM121BQ9BXQ6 578 aaPredicted RBP12.89□□□□□ -0.35
CCDC3-202ENST00000378839 TIMMDC1Q9NPL8 285 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 CDH7Q9ULB5 785 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 E2F6O75461 281 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 SEC14L2O76054 403 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 FGBP02675 491 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 ANXA4P09525 319 aaPredicted RBP12.89□□□□□ -0.35
CCDC3-202ENST00000378839 CYP4B1P13584 511 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 ZNF8P17098 575 aaPredicted RBP12.89□□□□□ -0.35
CCDC3-202ENST00000378839 XPAP23025 273 aaPredicted RBP12.89□□□□□ -0.35
CCDC3-202ENST00000378839 KDELR2P33947 212 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 CLK3P49761 638 aaKnown RBP12.89□□□□□ -0.35
CCDC3-202ENST00000378839 PSMD7P51665 324 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 SRSF11Q05519 484 aaKnown RBP12.89□□□□□ -0.35
CCDC3-202ENST00000378839 ACSM2AQ08AH3 577 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 E2F2Q14209 437 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 COX20Q5RI15 118 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 ACSM2BQ68CK6 577 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 SHQ1Q6PI26 577 aaKnown RBP12.89□□□□□ -0.35
CCDC3-202ENST00000378839 MSANTD1Q6ZTZ1 278 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 MMP21Q8N119 569 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 ZNF740Q8NDX6 193 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 WDR48Q8TAF3 677 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 TIFAQ96CG3 184 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 DUSP26Q9BV47 211 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 BLOC1S6Q9UL45 172 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 RUVBL1Q9Y265 456 aaKnown RBP12.89□□□□□ -0.35
CCDC3-202ENST00000378839 PCM1Q15154 2024 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 ZNF701M0R085 212 aaPredicted RBP12.89□□□□□ -0.35
CCDC3-202ENST00000378839 XPNPEP2O43895 674 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 MMP20O60882 483 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 RECQL5O94762 991 aaPredicted RBP12.89□□□□□ -0.35
CCDC3-202ENST00000378839 JUNBP17275 347 aaPredicted RBP12.89□□□□□ -0.35
CCDC3-202ENST00000378839 HOXA9P31269 272 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 ENTPD1P49961 510 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 MVDP53602 400 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.89□□□□□ -0.35
CCDC3-202ENST00000378839 ETFBKMTQ8IXQ9 262 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 EID3Q8N140 333 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 OR4K1Q8NGD4 311 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.89□□□□□ -0.35
CCDC3-202ENST00000378839 FBLIM1Q8WUP2 373 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 HDAC2Q92769 488 aaKnown RBP12.89□□□□□ -0.35
CCDC3-202ENST00000378839 UBE2FQ969M7 185 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 HSH2DQ96JZ2 352 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 FAM129BQ96TA1 746 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 TPT1P8Q9HAU6 139 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 AP3M1Q9Y2T2 418 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 PCDHB11Q9Y5F2 797 aa12.89□□□□□ -0.35
CCDC3-202ENST00000378839 KIAA1549LQ6ZVL6 1849 aa12.88□□□□□ -0.35
CCDC3-202ENST00000378839 PAPLNO95428 1278 aa12.88□□□□□ -0.35
CCDC3-202ENST00000378839 AQP1P29972 269 aa12.88□□□□□ -0.35
CCDC3-202ENST00000378839 NNMTP40261 264 aa12.88□□□□□ -0.35
CCDC3-202ENST00000378839 TMEM240Q5SV17 173 aa12.88□□□□□ -0.35
CCDC3-202ENST00000378839 PDE12Q6L8Q7 609 aaKnown RBP12.88□□□□□ -0.35
CCDC3-202ENST00000378839 DUS1LQ6P1R4 473 aaKnown RBP12.88□□□□□ -0.35
CCDC3-202ENST00000378839 CCDC71Q8IV32 467 aaPredicted RBP12.88□□□□□ -0.35
CCDC3-202ENST00000378839 NAGSQ8N159 534 aa12.88□□□□□ -0.35
CCDC3-202ENST00000378839 PGBD3Q8N328 593 aa12.88□□□□□ -0.35
CCDC3-202ENST00000378839 C2orf73Q8N5S3 287 aaPredicted RBP12.88□□□□□ -0.35
CCDC3-202ENST00000378839 SDCCAG3Q96C92 435 aa12.88□□□□□ -0.35
CCDC3-202ENST00000378839 RDH12Q96NR8 316 aa12.88□□□□□ -0.35
CCDC3-202ENST00000378839 IL17FQ96PD4 163 aa12.88□□□□□ -0.35
CCDC3-202ENST00000378839 TMEM184CQ9NVA4 438 aa12.88□□□□□ -0.35
CCDC3-202ENST00000378839 PLAGL1Q9UM63 463 aa12.88□□□□□ -0.35
CCDC3-202ENST00000378839 MUC22E2RYF6 1773 aaPredicted RBP12.88□□□□□ -0.35
CCDC3-202ENST00000378839 H3BM21 787 aa12.88□□□□□ -0.35
CCDC3-202ENST00000378839 PCDH7O60245 1069 aa12.88□□□□□ -0.35
CCDC3-202ENST00000378839 ABCB7O75027 752 aa12.88□□□□□ -0.35
CCDC3-202ENST00000378839 CATP04040 527 aaKnown RBP12.88□□□□□ -0.35
CCDC3-202ENST00000378839 HNF4AP41235 474 aa12.88□□□□□ -0.35
CCDC3-202ENST00000378839 TSTA3Q13630 321 aaPredicted RBP12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms