RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 DDHD2O94830 711 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 PGLSO95336 258 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 RLN1P04808 185 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 SPP1P10451 314 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 MYL6BP14649 208 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 CDH3P22223 829 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 MFAP3P55082 362 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 CLDN15P56746 228 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 PTGISQ16647 500 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 ANKRD20A4Q4UJ75 823 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 ANKRD20A8PQ5CZ79 823 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 XKR3Q5GH77 459 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 CCDC158Q5M9N0 1113 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 ANKRD20A2Q5SQ80 823 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 ANKRD20A1Q5TYW2 823 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 ANKRD20A3Q5VUR7 823 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 BSPRYQ5W0U4 402 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 CYB5D1Q6P9G0 228 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 TUSC5Q8IXB3 177 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 SYCP3Q8IZU3 236 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 RYBPQ8N488 228 aaPredicted RBP1.86□□□□□ -2.11
VPS13A-206ENST00000376646 ZNF713Q8N859 430 aaPredicted RBP1.86□□□□□ -2.11
VPS13A-206ENST00000376646 RASGEF1AQ8N9B8 481 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 ATAD1Q8NBU5 361 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 FIBINQ8TAL6 211 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 PHLDA1Q8WV24 401 aaPredicted RBP1.86□□□□□ -2.11
VPS13A-206ENST00000376646 RIT1Q92963 219 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 MLPHQ9BV36 600 aaPredicted RBP1.86□□□□□ -2.11
VPS13A-206ENST00000376646 DGCR6LQ9BY27 220 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 GSN-AS1Q9NRJ2 163 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 PANK4Q9NVE7 773 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 SPHK1Q9NYA1 384 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 ERAP1Q9NZ08 941 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP1.86□□□□□ -2.11
VPS13A-206ENST00000376646 WDR37Q9Y2I8 494 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 TRIM17Q9Y577 477 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 IGSF1Q8N6C5 1336 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 AGRNO00468 2067 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 TRAV24A0A0B4J272 114 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 SLCO1B7G3V0H7 640 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 STX6O43752 255 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 SNX3O60493 162 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 MAGEC1O60732 1142 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 FMO6PO60774 539 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 KHDRBS3O75525 346 aaKnown RBP1.86□□□□□ -2.11
VPS13A-206ENST00000376646 SERPING1P05155 500 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 ANKRD34CP0C6C1 535 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 STAG3L1P0CL83 205 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 DARSP14868 501 aaKnown RBP1.86□□□□□ -2.11
VPS13A-206ENST00000376646 ALDH1B1P30837 517 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 SOAT1P35610 550 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 MMP12P39900 470 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 HNF4AP41235 474 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 RPL21P46778 160 aaKnown RBP1.86□□□□□ -2.11
VPS13A-206ENST00000376646 GCNT1Q02742 428 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 C17orf67Q0P5P2 114 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 ILF2Q12905 390 aaKnown RBP1.86□□□□□ -2.11
VPS13A-206ENST00000376646 PHKG1Q16816 387 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 ZNF674Q2M3X9 581 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 SGSM1Q2NKQ1 1148 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 FAM174BQ3ZCQ3 159 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 TXNRD3NBQ6F5E7 133 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 IYDQ6PHW0 289 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 LINC00696Q6ZRV3 163 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 BTN2A1Q7KYR7 527 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 HOGA1Q86XE5 327 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 OR10Q1Q8NGQ4 319 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 GRK7Q8WTQ7 553 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 FUCA2Q9BTY2 467 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 OR2B2Q9GZK3 357 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 DNAI2Q9GZS0 605 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 UPF3AQ9H1J1 476 aaKnown RBP1.86□□□□□ -2.11
VPS13A-206ENST00000376646 TLE6Q9H808 572 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 TMEM206Q9H813 350 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 SPHK2Q9NRA0 654 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 FLRT3Q9NZU0 649 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 CDH7Q9ULB5 785 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 STUB1Q9UNE7 303 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 A0A1W2PN81 502 aa1.85□□□□□ -2.11
VPS13A-206ENST00000376646 OOEPA6NGQ2 149 aa1.85□□□□□ -2.11
VPS13A-206ENST00000376646 YDJCA8MPS7 323 aa1.85□□□□□ -2.11
VPS13A-206ENST00000376646 CCL24O00175 119 aa1.85□□□□□ -2.11
VPS13A-206ENST00000376646 TIA1P31483 386 aaKnown RBP eCLIP1.85□□□□□ -2.11
VPS13A-206ENST00000376646 CSTF2P33240 577 aaKnown RBP eCLIP1.85□□□□□ -2.11
VPS13A-206ENST00000376646 CHRNA7P36544 502 aa1.85□□□□□ -2.11
VPS13A-206ENST00000376646 VAMP7P51809 220 aa1.85□□□□□ -2.11
VPS13A-206ENST00000376646 KRTAP12-2P59991 146 aa1.85□□□□□ -2.11
VPS13A-206ENST00000376646 FOLH1Q04609 750 aa1.85□□□□□ -2.11
VPS13A-206ENST00000376646 KLC1Q07866 573 aa1.85□□□□□ -2.11
VPS13A-206ENST00000376646 HERC3Q15034 1050 aa1.85□□□□□ -2.11
VPS13A-206ENST00000376646 TEAD2Q15562 447 aa1.85□□□□□ -2.11
VPS13A-206ENST00000376646 CDO1Q16878 200 aa1.85□□□□□ -2.11
VPS13A-206ENST00000376646 TYSND1Q2T9J0 566 aa1.85□□□□□ -2.11
VPS13A-206ENST00000376646 TWISTNBQ3B726 338 aaPredicted RBP1.85□□□□□ -2.11
VPS13A-206ENST00000376646 GLIPR1L2Q4G1C9 344 aa1.85□□□□□ -2.11
VPS13A-206ENST00000376646 SUSD4Q5VX71 490 aa1.85□□□□□ -2.11
VPS13A-206ENST00000376646 CASC4Q6P4E1 433 aa1.85□□□□□ -2.11
VPS13A-206ENST00000376646 NOTUMQ6P988 496 aa1.85□□□□□ -2.11
VPS13A-206ENST00000376646 BTNL8Q6UX41 500 aa1.85□□□□□ -2.11
VPS13A-206ENST00000376646 AMIGO1Q86WK6 493 aa1.85□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms