RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 DCAF4L2Q8NA75 395 aa11.72□□□□□ -0.53
CLIP3-201ENST00000360535 OR9Q2Q8NGE9 314 aa11.72□□□□□ -0.53
CLIP3-201ENST00000360535 KCNS3Q9BQ31 491 aa11.72□□□□□ -0.53
CLIP3-201ENST00000360535 SLIRPQ9GZT3 109 aaKnown RBP11.72□□□□□ -0.53
CLIP3-201ENST00000360535 ZNF334Q9HCZ1 680 aaPredicted RBP11.72□□□□□ -0.53
CLIP3-201ENST00000360535 IMPAD1Q9NX62 359 aa11.72□□□□□ -0.53
CLIP3-201ENST00000360535 NDRG4Q9ULP0 352 aaKnown RBP11.72□□□□□ -0.53
CLIP3-201ENST00000360535 MAP4K5Q9Y4K4 846 aa11.72□□□□□ -0.53
CLIP3-201ENST00000360535 OR51B4Q9Y5P0 310 aa11.72□□□□□ -0.53
CLIP3-201ENST00000360535 PQBP1O60828 265 aaKnown RBP11.72□□□□□ -0.53
CLIP3-201ENST00000360535 IGHA2P01877 340 aa11.72□□□□□ -0.53
CLIP3-201ENST00000360535 CHRM5P08912 532 aaPredicted RBP11.72□□□□□ -0.53
CLIP3-201ENST00000360535 CYP2A7P20853 494 aa11.72□□□□□ -0.53
CLIP3-201ENST00000360535 TGM1P22735 817 aa11.72□□□□□ -0.53
CLIP3-201ENST00000360535 SOAT1P35610 550 aa11.72□□□□□ -0.53
CLIP3-201ENST00000360535 BDKRB1P46663 353 aa11.72□□□□□ -0.53
CLIP3-201ENST00000360535 PCYT1AP49585 367 aa11.72□□□□□ -0.53
CLIP3-201ENST00000360535 LRRC74AQ0VAA2 488 aa11.72□□□□□ -0.53
CLIP3-201ENST00000360535 MED22Q15528 200 aa11.72□□□□□ -0.53
CLIP3-201ENST00000360535 TMEM53Q6P2H8 277 aa11.72□□□□□ -0.53
CLIP3-201ENST00000360535 SPATC1Q76KD6 591 aa11.72□□□□□ -0.53
CLIP3-201ENST00000360535 TSPYL5Q86VY4 417 aaPredicted RBP11.72□□□□□ -0.53
CLIP3-201ENST00000360535 NPAS4Q8IUM7 802 aa11.72□□□□□ -0.53
CLIP3-201ENST00000360535 CHST14Q8NCH0 376 aa11.72□□□□□ -0.53
CLIP3-201ENST00000360535 OR4A15Q8NGL6 344 aa11.72□□□□□ -0.53
CLIP3-201ENST00000360535 TCF25Q9BQ70 676 aa11.72□□□□□ -0.53
CLIP3-201ENST00000360535 ITPAQ9BY32 194 aa11.72□□□□□ -0.53
CLIP3-201ENST00000360535 CWH43Q9H720 699 aa11.72□□□□□ -0.53
CLIP3-201ENST00000360535 SPASTQ9UBP0 616 aa11.72□□□□□ -0.53
CLIP3-201ENST00000360535 B4GALT6Q9UBX8 382 aa11.72□□□□□ -0.53
CLIP3-201ENST00000360535 MAN2B2Q9Y2E5 1009 aa11.72□□□□□ -0.53
CLIP3-201ENST00000360535 AP3M1Q9Y2T2 418 aa11.72□□□□□ -0.53
CLIP3-201ENST00000360535 GPC6Q9Y625 555 aaPredicted RBP11.72□□□□□ -0.53
CLIP3-201ENST00000360535 MYO10Q9HD67 2058 aa11.72□□□□□ -0.53
CLIP3-201ENST00000360535 A0A1W2PQ45 241 aaPredicted RBP11.71□□□□□ -0.53
CLIP3-201ENST00000360535 A0A1W2PQY0 241 aa11.71□□□□□ -0.53
CLIP3-201ENST00000360535 GABRR3A8MPY1 467 aa11.71□□□□□ -0.53
CLIP3-201ENST00000360535 C9P02748 559 aa11.71□□□□□ -0.53
CLIP3-201ENST00000360535 GSTT2P0CG29 244 aa11.71□□□□□ -0.53
CLIP3-201ENST00000360535 GSTT2BP0CG30 244 aa11.71□□□□□ -0.53
CLIP3-201ENST00000360535 SELPP16109 830 aa11.71□□□□□ -0.53
CLIP3-201ENST00000360535 PSMA3P25788 255 aa11.71□□□□□ -0.53
CLIP3-201ENST00000360535 GABRR2P28476 465 aa11.71□□□□□ -0.53
CLIP3-201ENST00000360535 GRK5P34947 590 aa11.71□□□□□ -0.53
CLIP3-201ENST00000360535 PRIM2P49643 509 aa11.71□□□□□ -0.53
CLIP3-201ENST00000360535 MC1RQ01726 317 aa11.71□□□□□ -0.53
CLIP3-201ENST00000360535 DOC2AQ14183 400 aa11.71□□□□□ -0.53
CLIP3-201ENST00000360535 ZNF404Q494X3 552 aa11.71□□□□□ -0.53
CLIP3-201ENST00000360535 GPR33Q49SQ1 333 aa11.71□□□□□ -0.53
CLIP3-201ENST00000360535 COX20Q5RI15 118 aa11.71□□□□□ -0.53
CLIP3-201ENST00000360535 Q6ZVU0 165 aa11.71□□□□□ -0.53
CLIP3-201ENST00000360535 EIF3MQ7L2H7 374 aaKnown RBP11.71□□□□□ -0.53
CLIP3-201ENST00000360535 ZNF366Q8N895 744 aa11.71□□□□□ -0.53
CLIP3-201ENST00000360535 OR2AP1Q8NGE2 309 aa11.71□□□□□ -0.53
CLIP3-201ENST00000360535 ZNF461Q8TAF7 563 aa11.71□□□□□ -0.53
CLIP3-201ENST00000360535 APH1BQ8WW43 257 aa11.71□□□□□ -0.53
CLIP3-201ENST00000360535 ALG14Q96F25 216 aa11.71□□□□□ -0.53
CLIP3-201ENST00000360535 MTG2Q9H4K7 406 aa11.71□□□□□ -0.53
CLIP3-201ENST00000360535 TRIM39Q9HCM9 518 aa11.71□□□□□ -0.53
CLIP3-201ENST00000360535 ADPRHL2Q9NX46 363 aa11.71□□□□□ -0.53
CLIP3-201ENST00000360535 DUSP12Q9UNI6 340 aa11.71□□□□□ -0.53
CLIP3-201ENST00000360535 NAALAD2Q9Y3Q0 740 aa11.71□□□□□ -0.53
CLIP3-201ENST00000360535 PCDHGA6Q9Y5G7 932 aa11.71□□□□□ -0.53
CLIP3-201ENST00000360535 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP11.71□□□□□ -0.53
CLIP3-201ENST00000360535 TLL1O43897 1013 aa11.71□□□□□ -0.53
CLIP3-201ENST00000360535 WNT3P56703 355 aa11.71□□□□□ -0.53
CLIP3-201ENST00000360535 GAB1Q13480 694 aa11.71□□□□□ -0.53
CLIP3-201ENST00000360535 KEAP1Q14145 624 aa11.71□□□□□ -0.53
CLIP3-201ENST00000360535 CCDC92Q53HC0 331 aaPredicted RBP11.71□□□□□ -0.53
CLIP3-201ENST00000360535 ZC3H12BQ5HYM0 836 aaKnown RBP11.71□□□□□ -0.53
CLIP3-201ENST00000360535 DPY19L3Q6ZPD9 716 aa11.71□□□□□ -0.53
CLIP3-201ENST00000360535 Q6ZVL8 140 aa11.71□□□□□ -0.53
CLIP3-201ENST00000360535 USP45Q70EL2 814 aa11.71□□□□□ -0.53
CLIP3-201ENST00000360535 PRSS48Q7RTY5 328 aa11.71□□□□□ -0.53
CLIP3-201ENST00000360535 SERPINA11Q86U17 422 aa11.71□□□□□ -0.53
CLIP3-201ENST00000360535 PLPP6Q8IY26 295 aa11.71□□□□□ -0.53
CLIP3-201ENST00000360535 NIPSNAP1Q9BPW8 284 aa11.71□□□□□ -0.53
CLIP3-201ENST00000360535 VN1R3Q9BXE9 311 aa11.71□□□□□ -0.53
CLIP3-201ENST00000360535 SCHIP1Q9P0W5 487 aaPredicted RBP11.71□□□□□ -0.53
CLIP3-201ENST00000360535 OR2A25A4D2G3 310 aa11.71□□□□□ -0.54
CLIP3-201ENST00000360535 HTR3EA5X5Y0 456 aa11.71□□□□□ -0.54
CLIP3-201ENST00000360535 FAM227AF5H4B4 570 aa11.71□□□□□ -0.54
CLIP3-201ENST00000360535 M0QX08 132 aa11.71□□□□□ -0.54
CLIP3-201ENST00000360535 PSMD11O00231 422 aa11.71□□□□□ -0.54
CLIP3-201ENST00000360535 SNPHO15079 494 aa11.71□□□□□ -0.54
CLIP3-201ENST00000360535 RGS5O15539 181 aa11.71□□□□□ -0.54
CLIP3-201ENST00000360535 SPNP16150 400 aa11.71□□□□□ -0.54
CLIP3-201ENST00000360535 S100A5P33763 92 aa11.71□□□□□ -0.54
CLIP3-201ENST00000360535 HOXD12P35452 270 aa11.71□□□□□ -0.54
CLIP3-201ENST00000360535 NR4A2P43354 598 aa11.71□□□□□ -0.54
CLIP3-201ENST00000360535 MAGEA2P43356 314 aa11.71□□□□□ -0.54
CLIP3-201ENST00000360535 SMARCB1Q12824 385 aa11.71□□□□□ -0.54
CLIP3-201ENST00000360535 KCNJ8Q15842 424 aa11.71□□□□□ -0.54
CLIP3-201ENST00000360535 PLEKHG6Q3KR16 790 aa11.71□□□□□ -0.54
CLIP3-201ENST00000360535 SYTL3Q4VX76 610 aa11.71□□□□□ -0.54
CLIP3-201ENST00000360535 TPRG1Q6ZUI0 275 aa11.71□□□□□ -0.54
CLIP3-201ENST00000360535 CBLL1Q75N03 491 aa11.71□□□□□ -0.54
CLIP3-201ENST00000360535 ZNF605Q86T29 641 aa11.71□□□□□ -0.54
CLIP3-201ENST00000360535 ARMC8Q8IUR7 673 aa11.71□□□□□ -0.54
CLIP3-201ENST00000360535 OR10G2Q8NGC3 310 aa11.71□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms