RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 OR5K1Q8NHB7 308 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 ATL1Q8WXF7 558 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 PDP1Q9P0J1 537 aaPredicted RBP9.97□□□□□ -0.81
LIMA1-201ENST00000341247 DEC1Q9P2X7 70 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 HEPACAM2A8MVW5 462 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 H0YAE9 185 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 LATO43561 262 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 STATHP02808 62 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 ZNF8P17098 575 aaPredicted RBP9.97□□□□□ -0.81
LIMA1-201ENST00000341247 HLCSP50747 726 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 GALK1P51570 392 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 RAPSNQ13702 412 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 GRHL2Q6ISB3 625 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 MED27Q6P2C8 311 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 FAM83HQ6ZRV2 1179 aaPredicted RBP9.97□□□□□ -0.81
LIMA1-201ENST00000341247 GET4Q7L5D6 327 aaPredicted RBP9.97□□□□□ -0.81
LIMA1-201ENST00000341247 PTOV1Q86YD1 416 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 GPR65Q8IYL9 337 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 NAGSQ8N159 534 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 GLMNQ92990 594 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 RASSF1Q9NS23 344 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 SPATA6Q9NWH7 488 aaPredicted RBP9.97□□□□□ -0.81
LIMA1-201ENST00000341247 SAMHD1Q9Y3Z3 626 aaKnown RBP9.97□□□□□ -0.81
LIMA1-201ENST00000341247 ORC6Q9Y5N6 252 aa9.97□□□□□ -0.81
LIMA1-201ENST00000341247 H3BMQ9 156 aa9.96□□□□□ -0.81
LIMA1-201ENST00000341247 SLC9A3R1O14745 358 aaPredicted RBP9.96□□□□□ -0.81
LIMA1-201ENST00000341247 SCAMP2O15127 329 aaKnown RBP9.96□□□□□ -0.81
LIMA1-201ENST00000341247 ADH1CP00326 375 aa9.96□□□□□ -0.81
LIMA1-201ENST00000341247 IGFBP5P24593 272 aa9.96□□□□□ -0.81
LIMA1-201ENST00000341247 KDELR2P33947 212 aa9.96□□□□□ -0.81
LIMA1-201ENST00000341247 SRSF11Q05519 484 aaKnown RBP9.96□□□□□ -0.81
LIMA1-201ENST00000341247 FAM78AQ5JUQ0 283 aa9.96□□□□□ -0.81
LIMA1-201ENST00000341247 TTC23Q5W5X9 447 aa9.96□□□□□ -0.81
LIMA1-201ENST00000341247 CAPN13Q6MZZ7 669 aaPredicted RBP9.96□□□□□ -0.81
LIMA1-201ENST00000341247 DCP2Q8IU60 420 aaKnown RBP9.96□□□□□ -0.81
LIMA1-201ENST00000341247 ERI1Q8IV48 349 aaKnown RBP9.96□□□□□ -0.81
LIMA1-201ENST00000341247 PLPP6Q8IY26 295 aa9.96□□□□□ -0.81
LIMA1-201ENST00000341247 CELF5Q8N6W0 485 aaKnown RBP9.96□□□□□ -0.81
LIMA1-201ENST00000341247 OR52J3Q8NH60 311 aa9.96□□□□□ -0.81
LIMA1-201ENST00000341247 UBE2FQ969M7 185 aa9.96□□□□□ -0.81
LIMA1-201ENST00000341247 COG8Q96MW5 612 aa9.96□□□□□ -0.81
LIMA1-201ENST00000341247 RHNO1Q9BSD3 238 aa9.96□□□□□ -0.81
LIMA1-201ENST00000341247 RUBCNLQ9H714 662 aa9.96□□□□□ -0.81
LIMA1-201ENST00000341247 TRIM39Q9HCM9 518 aa9.96□□□□□ -0.81
LIMA1-201ENST00000341247 C8orf4Q9NR00 106 aa9.96□□□□□ -0.81
LIMA1-201ENST00000341247 DYRK4Q9NR20 520 aa9.96□□□□□ -0.81
LIMA1-201ENST00000341247 F5P12259 2224 aa9.96□□□□□ -0.81
LIMA1-201ENST00000341247 KNL1Q8NG31 2342 aa9.96□□□□□ -0.81
LIMA1-201ENST00000341247 RTCAO00442 366 aaKnown RBP9.96□□□□□ -0.81
LIMA1-201ENST00000341247 CCNDBP1O95273 360 aa9.96□□□□□ -0.81
LIMA1-201ENST00000341247 PCCBP05166 539 aa9.96□□□□□ -0.81
LIMA1-201ENST00000341247 KLK1P06870 262 aa9.96□□□□□ -0.81
LIMA1-201ENST00000341247 EPHX1P07099 455 aa9.96□□□□□ -0.81
LIMA1-201ENST00000341247 NPPBP16860 134 aa9.96□□□□□ -0.81
LIMA1-201ENST00000341247 SOAT1P35610 550 aa9.96□□□□□ -0.81
LIMA1-201ENST00000341247 HNF4AP41235 474 aa9.96□□□□□ -0.81
LIMA1-201ENST00000341247 OR1E2P47887 323 aa9.96□□□□□ -0.81
LIMA1-201ENST00000341247 ENTPD1P49961 510 aa9.96□□□□□ -0.81
LIMA1-201ENST00000341247 CSTF3Q12996 717 aaKnown RBP9.96□□□□□ -0.81
LIMA1-201ENST00000341247 ZNF234Q14588 700 aa9.96□□□□□ -0.81
LIMA1-201ENST00000341247 COX20Q5RI15 118 aa9.96□□□□□ -0.81
LIMA1-201ENST00000341247 C9orf64Q5T6V5 341 aa9.96□□□□□ -0.81
LIMA1-201ENST00000341247 XKR5Q6UX68 686 aa9.96□□□□□ -0.81
LIMA1-201ENST00000341247 SLCO4C1Q6ZQN7 724 aa9.96□□□□□ -0.81
LIMA1-201ENST00000341247 RNF165Q6ZSG1 346 aa9.96□□□□□ -0.81
LIMA1-201ENST00000341247 NEK10Q6ZWH5 1172 aa9.96□□□□□ -0.81
LIMA1-201ENST00000341247 ARMCX6Q7L4S7 300 aa9.96□□□□□ -0.81
LIMA1-201ENST00000341247 ZNF547Q8IVP9 402 aa9.96□□□□□ -0.81
LIMA1-201ENST00000341247 ATG16L2Q8NAA4 619 aa9.96□□□□□ -0.81
LIMA1-201ENST00000341247 LEMD2Q8NC56 503 aa9.96□□□□□ -0.81
LIMA1-201ENST00000341247 CHDHQ8NE62 594 aaPredicted RBP9.96□□□□□ -0.81
LIMA1-201ENST00000341247 OR5AR1Q8NGP9 310 aa9.96□□□□□ -0.81
LIMA1-201ENST00000341247 SPPL2AQ8TCT8 520 aa9.96□□□□□ -0.81
LIMA1-201ENST00000341247 OR8D1Q8WZ84 308 aa9.96□□□□□ -0.81
LIMA1-201ENST00000341247 WBP1LQ9NX94 342 aa9.96□□□□□ -0.81
LIMA1-201ENST00000341247 TUBA8Q9NY65 449 aaPredicted RBP9.96□□□□□ -0.81
LIMA1-201ENST00000341247 C3orf18Q9UK00 162 aa9.96□□□□□ -0.81
LIMA1-201ENST00000341247 DYRK1BQ9Y463 629 aa9.96□□□□□ -0.81
LIMA1-201ENST00000341247 CARNS1A5YM72 827 aa9.96□□□□□ -0.82
LIMA1-201ENST00000341247 ZNF197O14709 1029 aa9.96□□□□□ -0.82
LIMA1-201ENST00000341247 BCKDKO14874 412 aa9.96□□□□□ -0.82
LIMA1-201ENST00000341247 C6orf47O95873 294 aa9.96□□□□□ -0.82
LIMA1-201ENST00000341247 PRNPP04156 253 aa9.96□□□□□ -0.82
LIMA1-201ENST00000341247 ETFAP13804 333 aa9.96□□□□□ -0.82
LIMA1-201ENST00000341247 ADRB3P13945 408 aa9.96□□□□□ -0.82
LIMA1-201ENST00000341247 ZNF182P17025 639 aaPredicted RBP9.96□□□□□ -0.82
LIMA1-201ENST00000341247 HOXB9P17482 250 aaPredicted RBP9.96□□□□□ -0.82
LIMA1-201ENST00000341247 CRHBPP24387 322 aa9.96□□□□□ -0.82
LIMA1-201ENST00000341247 BNIP3Q12983 259 aa9.96□□□□□ -0.82
LIMA1-201ENST00000341247 C6orf141Q5SZD1 244 aa9.96□□□□□ -0.82
LIMA1-201ENST00000341247 CPZQ66K79 652 aa9.96□□□□□ -0.82
LIMA1-201ENST00000341247 OR2T5Q6IEZ7 315 aa9.96□□□□□ -0.82
LIMA1-201ENST00000341247 KIAA0907Q7Z7F0 614 aaPredicted RBP9.96□□□□□ -0.82
LIMA1-201ENST00000341247 FAM9CQ8IZT9 166 aa9.96□□□□□ -0.82
LIMA1-201ENST00000341247 OR2T29Q8NH02 315 aa9.96□□□□□ -0.82
LIMA1-201ENST00000341247 OR56A3Q8NH54 315 aa9.96□□□□□ -0.82
LIMA1-201ENST00000341247 THAP11Q96EK4 314 aa9.96□□□□□ -0.82
LIMA1-201ENST00000341247 LHPPQ9H008 270 aa9.96□□□□□ -0.82
LIMA1-201ENST00000341247 IGFLR1Q9H665 355 aa9.96□□□□□ -0.82
LIMA1-201ENST00000341247 KIF17Q9P2E2 1029 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms