RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 HSD3B1P14060 373 aa19.34■□□□□ 0.69
VPS53-201ENST00000291074 IDSP22304 550 aa19.34■□□□□ 0.69
VPS53-201ENST00000291074 HSD3B2P26439 372 aa19.34■□□□□ 0.69
VPS53-201ENST00000291074 AQP1P29972 269 aa19.34■□□□□ 0.69
VPS53-201ENST00000291074 GPR1P46091 355 aa19.34■□□□□ 0.69
VPS53-201ENST00000291074 HPCAP84074 193 aa19.34■□□□□ 0.69
VPS53-201ENST00000291074 EPS8Q12929 822 aa19.34■□□□□ 0.69
VPS53-201ENST00000291074 SLBPQ14493 270 aaKnown RBP eCLIP19.34■□□□□ 0.69
VPS53-201ENST00000291074 ZNF385BQ569K4 471 aa19.34■□□□□ 0.69
VPS53-201ENST00000291074 TMEM240Q5SV17 173 aa19.34■□□□□ 0.69
VPS53-201ENST00000291074 OR2T5Q6IEZ7 315 aa19.34■□□□□ 0.69
VPS53-201ENST00000291074 MED27Q6P2C8 311 aa19.34■□□□□ 0.69
VPS53-201ENST00000291074 ZNF547Q8IVP9 402 aa19.34■□□□□ 0.69
VPS53-201ENST00000291074 OR2T29Q8NH02 315 aa19.34■□□□□ 0.69
VPS53-201ENST00000291074 HCAR2Q8TDS4 363 aa19.34■□□□□ 0.69
VPS53-201ENST00000291074 HDAC2Q92769 488 aaKnown RBP19.34■□□□□ 0.69
VPS53-201ENST00000291074 EZH1Q92800 747 aaPredicted RBP19.34■□□□□ 0.69
VPS53-201ENST00000291074 HSH2DQ96JZ2 352 aa19.34■□□□□ 0.69
VPS53-201ENST00000291074 MYOCQ99972 504 aa19.34■□□□□ 0.69
VPS53-201ENST00000291074 ATXN10Q9UBB4 475 aa19.34■□□□□ 0.69
VPS53-201ENST00000291074 AASSQ9UDR5 926 aa19.34■□□□□ 0.69
VPS53-201ENST00000291074 PRKAB1Q9Y478 270 aa19.34■□□□□ 0.69
VPS53-201ENST00000291074 PCYT1BQ9Y5K3 369 aaPredicted RBP19.34■□□□□ 0.69
VPS53-201ENST00000291074 UNC80Q8N2C7 3258 aa19.34■□□□□ 0.69
VPS53-201ENST00000291074 LINC01553A4QN01 128 aa19.33■□□□□ 0.69
VPS53-201ENST00000291074 MGAT4DA6NG13 374 aa19.33■□□□□ 0.69
VPS53-201ENST00000291074 ZNF701M0R085 212 aaPredicted RBP19.33■□□□□ 0.69
VPS53-201ENST00000291074 PCDH7O60245 1069 aa19.33■□□□□ 0.69
VPS53-201ENST00000291074 ADH1CP00326 375 aa19.33■□□□□ 0.69
VPS53-201ENST00000291074 PRNPP04156 253 aa19.33■□□□□ 0.69
VPS53-201ENST00000291074 NPPBP16860 134 aa19.33■□□□□ 0.69
VPS53-201ENST00000291074 ISL1P61371 349 aa19.33■□□□□ 0.69
VPS53-201ENST00000291074 FGD3Q5JSP0 725 aa19.33■□□□□ 0.69
VPS53-201ENST00000291074 RBM48Q5RL73 367 aaKnown RBP19.33■□□□□ 0.69
VPS53-201ENST00000291074 C9orf64Q5T6V5 341 aa19.33■□□□□ 0.69
VPS53-201ENST00000291074 PDE12Q6L8Q7 609 aaKnown RBP19.33■□□□□ 0.69
VPS53-201ENST00000291074 SHQ1Q6PI26 577 aaKnown RBP19.33■□□□□ 0.69
VPS53-201ENST00000291074 TRMT11Q7Z4G4 463 aaKnown RBP19.33■□□□□ 0.69
VPS53-201ENST00000291074 B4GALNT2Q8NHY0 566 aa19.33■□□□□ 0.69
VPS53-201ENST00000291074 WFIKKN2Q8TEU8 576 aa19.33■□□□□ 0.69
VPS53-201ENST00000291074 FZD4Q9ULV1 537 aa19.33■□□□□ 0.69
VPS53-201ENST00000291074 PSMD11O00231 422 aa19.33■□□□□ 0.68
VPS53-201ENST00000291074 HOXC11O43248 304 aaPredicted RBP19.33■□□□□ 0.68
VPS53-201ENST00000291074 ABCB7O75027 752 aa19.33■□□□□ 0.68
VPS53-201ENST00000291074 IGFBP5P24593 272 aa19.33■□□□□ 0.68
VPS53-201ENST00000291074 TIA1P31483 386 aaKnown RBP eCLIP19.33■□□□□ 0.68
VPS53-201ENST00000291074 C21orf58P58505 322 aa19.33■□□□□ 0.68
VPS53-201ENST00000291074 IER5LQ5T953 404 aa19.33■□□□□ 0.68
VPS53-201ENST00000291074 ZNF691Q5VV52 312 aa19.33■□□□□ 0.68
VPS53-201ENST00000291074 CAPN13Q6MZZ7 669 aaPredicted RBP19.33■□□□□ 0.68
VPS53-201ENST00000291074 ETFBKMTQ8IXQ9 262 aa19.33■□□□□ 0.68
VPS53-201ENST00000291074 OR4K1Q8NGD4 311 aa19.33■□□□□ 0.68
VPS53-201ENST00000291074 OR13F1Q8NGS4 319 aa19.33■□□□□ 0.68
VPS53-201ENST00000291074 SNX19Q92543 992 aa19.33■□□□□ 0.68
VPS53-201ENST00000291074 C1orf226A1L170 272 aa19.32■□□□□ 0.68
VPS53-201ENST00000291074 FKBP9O95302 570 aa19.32■□□□□ 0.68
VPS53-201ENST00000291074 CD247P20963 164 aa19.32■□□□□ 0.68
VPS53-201ENST00000291074 CRYBA2P53672 197 aa19.32■□□□□ 0.68
VPS53-201ENST00000291074 RAPSNQ13702 412 aa19.32■□□□□ 0.68
VPS53-201ENST00000291074 NFE2L1Q14494 772 aa19.32■□□□□ 0.68
VPS53-201ENST00000291074 NPAS3Q8IXF0 933 aa19.32■□□□□ 0.68
VPS53-201ENST00000291074 SPARTQ8N0X7 666 aa19.32■□□□□ 0.68
VPS53-201ENST00000291074 C2orf73Q8N5S3 287 aaPredicted RBP19.32■□□□□ 0.68
VPS53-201ENST00000291074 DRAXINQ8NBI3 349 aaPredicted RBP19.32■□□□□ 0.68
VPS53-201ENST00000291074 CNIH3Q8TBE1 160 aa19.32■□□□□ 0.68
VPS53-201ENST00000291074 TPD52L3Q96J77 140 aa19.32■□□□□ 0.68
VPS53-201ENST00000291074 DOK1Q99704 481 aa19.32■□□□□ 0.68
VPS53-201ENST00000291074 LHPPQ9H008 270 aa19.32■□□□□ 0.68
VPS53-201ENST00000291074 REV3LO60673 3130 aa19.32■□□□□ 0.68
VPS53-201ENST00000291074 RANBP2P49792 3224 aaKnown RBP19.32■□□□□ 0.68
VPS53-201ENST00000291074 SOBPA7XYQ1 873 aa19.32■□□□□ 0.68
VPS53-201ENST00000291074 ZNF197O14709 1029 aa19.32■□□□□ 0.68
VPS53-201ENST00000291074 LZTS3O60299 673 aaPredicted RBP19.32■□□□□ 0.68
VPS53-201ENST00000291074 TGFB1P01137 390 aa19.32■□□□□ 0.68
VPS53-201ENST00000291074 SEMG1P04279 462 aa19.32■□□□□ 0.68
VPS53-201ENST00000291074 FABP3P05413 133 aa19.32■□□□□ 0.68
VPS53-201ENST00000291074 PCSK2P16519 638 aa19.32■□□□□ 0.68
VPS53-201ENST00000291074 ITGB7P26010 798 aa19.32■□□□□ 0.68
VPS53-201ENST00000291074 TTKP33981 857 aa19.32■□□□□ 0.68
VPS53-201ENST00000291074 RANBP1P43487 201 aa19.32■□□□□ 0.68
VPS53-201ENST00000291074 ASMTP46597 345 aa19.32■□□□□ 0.68
VPS53-201ENST00000291074 DAPP51397 102 aa19.32■□□□□ 0.68
VPS53-201ENST00000291074 FPGSQ05932 587 aa19.32■□□□□ 0.68
VPS53-201ENST00000291074 PPIGQ13427 754 aaKnown RBP eCLIP19.32■□□□□ 0.684e-7■■□□□ 12.2
VPS53-201ENST00000291074 SIM2Q14190 667 aaPredicted RBP19.32■□□□□ 0.68
VPS53-201ENST00000291074 BCL7AQ4VC05 210 aa19.32■□□□□ 0.68
VPS53-201ENST00000291074 SPIN4Q56A73 249 aa19.32■□□□□ 0.68
VPS53-201ENST00000291074 DDX59Q5T1V6 619 aaKnown RBP eCLIP19.32■□□□□ 0.68
VPS53-201ENST00000291074 TMC5Q6UXY8 1006 aa19.32■□□□□ 0.68
VPS53-201ENST00000291074 ZNF852Q6ZMS4 543 aa19.32■□□□□ 0.68
VPS53-201ENST00000291074 ARMCX6Q7L4S7 300 aa19.32■□□□□ 0.68
VPS53-201ENST00000291074 SYNPOQ8N3V7 929 aa19.32■□□□□ 0.68
VPS53-201ENST00000291074 ZNF420Q8TAQ5 688 aaPredicted RBP19.32■□□□□ 0.68
VPS53-201ENST00000291074 IL17FQ96PD4 163 aa19.32■□□□□ 0.68
VPS53-201ENST00000291074 NRTNQ99748 197 aa19.32■□□□□ 0.68
VPS53-201ENST00000291074 OR51B5Q9H339 312 aa19.32■□□□□ 0.68
VPS53-201ENST00000291074 RIBC2Q9H4K1 309 aa19.32■□□□□ 0.68
VPS53-201ENST00000291074 PAK1IP1Q9NWT1 392 aaPredicted RBP19.32■□□□□ 0.68
VPS53-201ENST00000291074 PLAGL1Q9UM63 463 aa19.32■□□□□ 0.68
VPS53-201ENST00000291074 SLC27A6Q9Y2P4 619 aa19.32■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms