RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 IGDCC3Q8IVU1 814 aa18.59■□□□□ 0.57
UPF1-201ENST00000262803 EZH1Q92800 747 aaPredicted RBP18.59■□□□□ 0.57
UPF1-201ENST00000262803 C1orf74Q96LT6 269 aa18.59■□□□□ 0.57
UPF1-201ENST00000262803 OR51V1Q9H2C8 321 aa18.59■□□□□ 0.57
UPF1-201ENST00000262803 AHSA1O95433 338 aa18.59■□□□□ 0.57
UPF1-201ENST00000262803 ZNF41P51814 821 aaPredicted RBP18.59■□□□□ 0.57
UPF1-201ENST00000262803 PCLAFQ15004 111 aa18.59■□□□□ 0.57
UPF1-201ENST00000262803 NADK2Q4G0N4 442 aa18.59■□□□□ 0.57
UPF1-201ENST00000262803 OSTM1Q86WC4 334 aa18.59■□□□□ 0.57
UPF1-201ENST00000262803 KLHDC7BQ96G42 594 aa18.59■□□□□ 0.57
UPF1-201ENST00000262803 ZDHHC12Q96GR4 267 aa18.59■□□□□ 0.57
UPF1-201ENST00000262803 MAGEE1Q9HCI5 957 aa18.59■□□□□ 0.57
UPF1-201ENST00000262803 F2P00734 622 aa18.59■□□□□ 0.57
UPF1-201ENST00000262803 ARF5P84085 180 aa18.59■□□□□ 0.57
UPF1-201ENST00000262803 CHRNA6Q15825 494 aa18.59■□□□□ 0.57
UPF1-201ENST00000262803 CRTC2Q53ET0 693 aaPredicted RBP18.59■□□□□ 0.57
UPF1-201ENST00000262803 PROKR2Q8NFJ6 384 aa18.59■□□□□ 0.57
UPF1-201ENST00000262803 C7orf43Q8WVR3 580 aa18.59■□□□□ 0.57
UPF1-201ENST00000262803 NPY6RQ99463 290 aa18.59■□□□□ 0.57
UPF1-201ENST00000262803 KLRF1Q9NZS2 232 aa18.59■□□□□ 0.57
UPF1-201ENST00000262803 SIRPGQ9P1W8 387 aa18.59■□□□□ 0.57
UPF1-201ENST00000262803 AASSQ9UDR5 926 aa18.59■□□□□ 0.57
UPF1-201ENST00000262803 GMEB2Q9UKD1 530 aa18.59■□□□□ 0.57
UPF1-201ENST00000262803 IFT172Q9UG01 1749 aa18.59■□□□□ 0.57
UPF1-201ENST00000262803 FAM172BPA6NC97 362 aa18.59■□□□□ 0.57
UPF1-201ENST00000262803 TP53I11O14683 189 aa18.59■□□□□ 0.57
UPF1-201ENST00000262803 APBB3O95704 486 aa18.59■□□□□ 0.57
UPF1-201ENST00000262803 PRKCGP05129 697 aa18.59■□□□□ 0.57
UPF1-201ENST00000262803 FESP07332 822 aa18.59■□□□□ 0.57
UPF1-201ENST00000262803 ZNF12P17014 697 aa18.59■□□□□ 0.57
UPF1-201ENST00000262803 OXTRP30559 389 aa18.59■□□□□ 0.57
UPF1-201ENST00000262803 ACVRL1P37023 503 aa18.59■□□□□ 0.57
UPF1-201ENST00000262803 SCRN3Q0VDG4 424 aa18.59■□□□□ 0.57
UPF1-201ENST00000262803 MS4A13Q5J8X5 152 aa18.59■□□□□ 0.57
UPF1-201ENST00000262803 PYHIN1Q6K0P9 492 aa18.59■□□□□ 0.57
UPF1-201ENST00000262803 TFGQ92734 400 aaPredicted RBP18.59■□□□□ 0.57
UPF1-201ENST00000262803 TP53INP1Q96A56 240 aa18.59■□□□□ 0.57
UPF1-201ENST00000262803 PRKAB1Q9Y478 270 aa18.59■□□□□ 0.57
UPF1-201ENST00000262803 COL14A1Q05707 1796 aaKnown RBP18.59■□□□□ 0.57
UPF1-201ENST00000262803 TPST2O60704 377 aa18.59■□□□□ 0.57
UPF1-201ENST00000262803 RAB36O95755 333 aa18.59■□□□□ 0.57
UPF1-201ENST00000262803 TNFAIP8L2Q6P589 184 aaPredicted RBP18.59■□□□□ 0.57
UPF1-201ENST00000262803 FZD4Q9ULV1 537 aa18.59■□□□□ 0.57
UPF1-201ENST00000262803 TELO2Q9Y4R8 837 aa18.59■□□□□ 0.57
UPF1-201ENST00000262803 LMO7Q8WWI1 1683 aa18.58■□□□□ 0.57
UPF1-201ENST00000262803 MUSKO15146 869 aa18.58■□□□□ 0.57
UPF1-201ENST00000262803 DBIP07108 87 aaKnown RBP18.58■□□□□ 0.57
UPF1-201ENST00000262803 C8BP07358 591 aa18.58■□□□□ 0.57
UPF1-201ENST00000262803 FMO3P31513 532 aa18.58■□□□□ 0.57
UPF1-201ENST00000262803 GSK3BP49841 420 aa18.58■□□□□ 0.57
UPF1-201ENST00000262803 DGKQP52824 942 aa18.58■□□□□ 0.57
UPF1-201ENST00000262803 OR9I1Q8NGQ6 314 aa18.58■□□□□ 0.57
UPF1-201ENST00000262803 SMPDL3BQ92485 455 aa18.58■□□□□ 0.57
UPF1-201ENST00000262803 NECTIN4Q96NY8 510 aa18.58■□□□□ 0.57
UPF1-201ENST00000262803 PKP2Q99959 881 aa18.58■□□□□ 0.57
UPF1-201ENST00000262803 CCSER2Q9H7U1 834 aa18.58■□□□□ 0.57
UPF1-201ENST00000262803 AMBNQ9NP70 447 aa18.58■□□□□ 0.57
UPF1-201ENST00000262803 PARP4Q9UKK3 1724 aaKnown RBP18.58■□□□□ 0.57
UPF1-201ENST00000262803 ANKRD66B4E2M5 251 aa18.58■□□□□ 0.56
UPF1-201ENST00000262803 MATN2O00339 956 aa18.58■□□□□ 0.56
UPF1-201ENST00000262803 NUAK1O60285 661 aa18.58■□□□□ 0.56
UPF1-201ENST00000262803 ENTPD6O75354 484 aa18.58■□□□□ 0.56
UPF1-201ENST00000262803 PRPF38BQ5VTL8 546 aaKnown RBP18.58■□□□□ 0.56
UPF1-201ENST00000262803 ANO7Q6IWH7 933 aa18.58■□□□□ 0.56
UPF1-201ENST00000262803 FAM86B1Q8N7N1 296 aa18.58■□□□□ 0.56
UPF1-201ENST00000262803 ZBTB26Q9HCK0 441 aa18.58■□□□□ 0.56
UPF1-201ENST00000262803 FAM53CQ9NYF3 392 aa18.58■□□□□ 0.56
UPF1-201ENST00000262803 UTS2RQ9UKP6 389 aa18.58■□□□□ 0.56
UPF1-201ENST00000262803 TYROBPO43914 113 aa18.58■□□□□ 0.56
UPF1-201ENST00000262803 CCL14Q16627 93 aa18.58■□□□□ 0.56
UPF1-201ENST00000262803 LYSMD3Q7Z3D4 306 aa18.58■□□□□ 0.56
UPF1-201ENST00000262803 OR9A1PQ8NGU1 263 aa18.58■□□□□ 0.56
UPF1-201ENST00000262803 TMEM234Q8WY98 164 aa18.58■□□□□ 0.56
UPF1-201ENST00000262803 ADAM7Q9H2U9 754 aa18.58■□□□□ 0.56
UPF1-201ENST00000262803 SFXN1Q9H9B4 322 aa18.58■□□□□ 0.56
UPF1-201ENST00000262803 PIGBOS1A0A0B4J2F0 54 aa18.58■□□□□ 0.56
UPF1-201ENST00000262803 CDC7O00311 574 aa18.58■□□□□ 0.56
UPF1-201ENST00000262803 PRAMEF11O60813 436 aa18.58■□□□□ 0.56
UPF1-201ENST00000262803 ATP4BP51164 291 aa18.58■□□□□ 0.56
UPF1-201ENST00000262803 CBLBQ13191 982 aa18.58■□□□□ 0.56
UPF1-201ENST00000262803 ZDHHC14Q8IZN3 488 aa18.58■□□□□ 0.56
UPF1-201ENST00000262803 PSAT1Q9Y617 370 aa18.58■□□□□ 0.56
UPF1-201ENST00000262803 CLIC1O00299 241 aa18.57■□□□□ 0.56
UPF1-201ENST00000262803 KCNJ13O60928 360 aa18.57■□□□□ 0.56
UPF1-201ENST00000262803 IFNA21P01568 189 aa18.57■□□□□ 0.56
UPF1-201ENST00000262803 BTN3A2P78410 334 aa18.57■□□□□ 0.56
UPF1-201ENST00000262803 CEP97Q8IW35 865 aa18.57■□□□□ 0.56
UPF1-201ENST00000262803 NLGN2Q8NFZ4 835 aa18.57■□□□□ 0.56
UPF1-201ENST00000262803 OR52E4Q8NGH9 312 aa18.57■□□□□ 0.56
UPF1-201ENST00000262803 TLR4O00206 839 aa18.57■□□□□ 0.56
UPF1-201ENST00000262803 SLC22A1O15245 554 aa18.57■□□□□ 0.56
UPF1-201ENST00000262803 PRKD3O94806 890 aa18.57■□□□□ 0.56
UPF1-201ENST00000262803 PGAM2P15259 253 aa18.57■□□□□ 0.56
UPF1-201ENST00000262803 PVALBP20472 110 aaPredicted RBP18.57■□□□□ 0.56
UPF1-201ENST00000262803 MRPL49Q13405 166 aaKnown RBP18.57■□□□□ 0.56
UPF1-201ENST00000262803 PRSS58Q8IYP2 241 aa18.57■□□□□ 0.56
UPF1-201ENST00000262803 OR6K6Q8NGW6 343 aa18.57■□□□□ 0.56
UPF1-201ENST00000262803 COL21A1Q96P44 957 aa18.57■□□□□ 0.56
UPF1-201ENST00000262803 TMEM184CQ9NVA4 438 aa18.57■□□□□ 0.56
UPF1-201ENST00000262803 CPSF4LA6NMK7 179 aaKnown RBP18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms