RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-223ENST00000627587 C19orf57Q0VDD7 668 aa9.16□□□□□ -0.94
PDLIM5-223ENST00000627587 CHIT1Q13231 466 aa9.16□□□□□ -0.94
PDLIM5-223ENST00000627587 PRKG2Q13237 762 aa9.16□□□□□ -0.94
PDLIM5-223ENST00000627587 CPSF6Q16630 551 aaKnown RBP eCLIP9.16□□□□□ -0.94
PDLIM5-223ENST00000627587 RFTN2Q52LD8 501 aaPredicted RBP9.16□□□□□ -0.94
PDLIM5-223ENST00000627587 LIPJQ5W064 366 aa9.16□□□□□ -0.94
PDLIM5-223ENST00000627587 ADNP2Q6IQ32 1131 aa9.16□□□□□ -0.94
PDLIM5-223ENST00000627587 SUSD1Q6UWL2 747 aa9.16□□□□□ -0.94
PDLIM5-223ENST00000627587 DHRS13Q6UX07 377 aa9.16□□□□□ -0.94
PDLIM5-223ENST00000627587 GK5Q6ZS86 529 aa9.16□□□□□ -0.94
PDLIM5-223ENST00000627587 Q6ZSR6 202 aa9.16□□□□□ -0.94
PDLIM5-223ENST00000627587 SPATA19Q7Z5L4 167 aa9.16□□□□□ -0.94
PDLIM5-223ENST00000627587 SNX32Q86XE0 403 aa9.16□□□□□ -0.94
PDLIM5-223ENST00000627587 RNF175Q8N4F7 328 aa9.16□□□□□ -0.94
PDLIM5-223ENST00000627587 NEIL2Q969S2 332 aa9.16□□□□□ -0.94
PDLIM5-223ENST00000627587 CNDP2Q96KP4 475 aaKnown RBP9.16□□□□□ -0.94
PDLIM5-223ENST00000627587 TEX37Q96LM6 180 aa9.16□□□□□ -0.94
PDLIM5-223ENST00000627587 RAB3IPQ96QF0 476 aaPredicted RBP9.16□□□□□ -0.94
PDLIM5-223ENST00000627587 NRSN2Q9GZP1 204 aa9.16□□□□□ -0.94
PDLIM5-223ENST00000627587 ELOVL6Q9H5J4 265 aa9.16□□□□□ -0.94
PDLIM5-223ENST00000627587 SLC52A3Q9NQ40 469 aa9.16□□□□□ -0.94
PDLIM5-223ENST00000627587 PRDM8Q9NQV8 689 aa9.16□□□□□ -0.94
PDLIM5-223ENST00000627587 SDR39U1Q9NRG7 319 aaPredicted RBP9.16□□□□□ -0.94
PDLIM5-223ENST00000627587 GPRC5BQ9NZH0 403 aa9.16□□□□□ -0.94
PDLIM5-223ENST00000627587 TBC1D29Q9UFV1 150 aa9.16□□□□□ -0.94
PDLIM5-223ENST00000627587 KLF15Q9UIH9 416 aa9.16□□□□□ -0.94
PDLIM5-223ENST00000627587 SNX6Q9UNH7 406 aa9.16□□□□□ -0.94
PDLIM5-223ENST00000627587 KCNE2Q9Y6J6 123 aa9.16□□□□□ -0.94
PDLIM5-223ENST00000627587 A0A1W2PPV9 198 aa9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 A6NCN8 305 aa9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 ZNF839A8K0R7 811 aa9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 SLC28A1O00337 649 aa9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 FBP2O00757 339 aa9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 RRP8O43159 456 aaKnown RBP9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 RASSF9O75901 435 aa9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 PDYNP01213 254 aa9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 IDO1P14902 403 aa9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 GNAZP19086 355 aa9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 CCND1P24385 295 aa9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 AK4P27144 223 aaPredicted RBP9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 HSD17B2P37059 387 aa9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 RXRGP48443 463 aa9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 MRPL19P49406 292 aaKnown RBP9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 NEK2P51955 445 aa9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 ERVK-8P63133 956 aa9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 HMGCS1Q01581 520 aa9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 TSTA3Q13630 321 aaPredicted RBP9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 CYLC2Q14093 348 aaPredicted RBP9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 LRP8Q14114 963 aa9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 DOC2AQ14183 400 aa9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 ARHGAP19Q14CB8 494 aa9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 HERC3Q15034 1050 aa9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 RPS6KA2Q15349 733 aa9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 NR6A1Q15406 480 aa9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 MAPRE2Q15555 327 aa9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 ZRSR2Q15696 482 aaKnown RBP9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 GSTA3Q16772 222 aa9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 IMPG1Q17R60 797 aa9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 XKR6Q5GH73 641 aa9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 PAOXQ6QHF9 649 aa9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 SLCO4C1Q6ZQN7 724 aa9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 RD3Q7Z3Z2 195 aa9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 NRROSQ86YC3 692 aa9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 RAB42Q8N4Z0 105 aa9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 LINC01555Q8NAE3 123 aa9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 FNDC5Q8NAU1 212 aa9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 RP9Q8TA86 221 aaKnown RBP9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 WDR20Q8TBZ3 569 aa9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 SAP25Q8TEE9 199 aa9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 FERD3LQ96RJ6 166 aa9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 ACPTQ9BZG2 426 aa9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 BRINP2Q9C0B6 783 aa9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 TMEM168Q9H0V1 697 aa9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 C1orf21Q9H246 121 aa9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 TCEAL2Q9H3H9 227 aaPredicted RBP9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 ACTL8Q9H568 366 aa9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 CCDC177Q9NQR7 707 aaPredicted RBP9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 IMP3Q9NV31 184 aaKnown RBP9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 AIG1Q9NVV5 245 aa9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 SPATA7Q9P0W8 599 aa9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 ZNF490Q9ULM2 529 aaPredicted RBP9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 DYRK1BQ9Y463 629 aa9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 MDC1Q14676 2089 aaKnown RBP9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 CROCCQ5TZA2 2017 aa9.15□□□□□ -0.94
PDLIM5-223ENST00000627587 ASPMQ8IZT6 3477 aa9.15□□□□□ -0.95
PDLIM5-223ENST00000627587 TMEM131Q92545 1883 aa9.15□□□□□ -0.95
PDLIM5-223ENST00000627587 A8MUI8 341 aa9.15□□□□□ -0.95
PDLIM5-223ENST00000627587 PSMD12O00232 456 aaPredicted RBP9.15□□□□□ -0.95
PDLIM5-223ENST00000627587 ANKRD28O15084 1053 aa9.15□□□□□ -0.95
PDLIM5-223ENST00000627587 ITGAXP20702 1163 aa9.15□□□□□ -0.95
PDLIM5-223ENST00000627587 VARSP26640 1264 aaKnown RBP9.15□□□□□ -0.95
PDLIM5-223ENST00000627587 HNF4AP41235 474 aa9.15□□□□□ -0.95
PDLIM5-223ENST00000627587 CASP2P42575 452 aa9.15□□□□□ -0.95
PDLIM5-223ENST00000627587 SRP54P61011 504 aaKnown RBP9.15□□□□□ -0.95
PDLIM5-223ENST00000627587 SLC25A3Q00325 362 aa9.15□□□□□ -0.95
PDLIM5-223ENST00000627587 CTBSQ01459 385 aa9.15□□□□□ -0.95
PDLIM5-223ENST00000627587 EIF2B5Q13144 721 aaKnown RBP9.15□□□□□ -0.95
PDLIM5-223ENST00000627587 KRT33BQ14525 404 aa9.15□□□□□ -0.95
PDLIM5-223ENST00000627587 RTP5Q14D33 572 aa9.15□□□□□ -0.95
PDLIM5-223ENST00000627587 KIAA0040Q15053 153 aa9.15□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms