RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 SORBS1Q9BX66 1292 aaKnown RBP10.26□□□□□ -0.77
CUX1-221ENST00000622516 UGT2B28Q9BY64 529 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 YBX2Q9Y2T7 364 aaKnown RBP10.26□□□□□ -0.77
CUX1-221ENST00000622516 HEMK1Q9Y5R4 338 aaPredicted RBP10.26□□□□□ -0.77
CUX1-221ENST00000622516 IGLON5A6NGN9 336 aa10.25□□□□□ -0.77
CUX1-221ENST00000622516 G3V2T6 193 aa10.25□□□□□ -0.77
CUX1-221ENST00000622516 PCDH8O95206 1070 aa10.25□□□□□ -0.77
CUX1-221ENST00000622516 MAPK1P28482 360 aa10.25□□□□□ -0.77
CUX1-221ENST00000622516 PCSK6P29122 969 aa10.25□□□□□ -0.77
CUX1-221ENST00000622516 POLR2IP36954 125 aaKnown RBP10.25□□□□□ -0.77
CUX1-221ENST00000622516 GZMMP51124 257 aa10.25□□□□□ -0.77
CUX1-221ENST00000622516 SLBPQ14493 270 aaKnown RBP eCLIP10.25□□□□□ -0.77
CUX1-221ENST00000622516 PUS10Q3MIT2 529 aaKnown RBP10.25□□□□□ -0.77
CUX1-221ENST00000622516 RNF165Q6ZSG1 346 aa10.25□□□□□ -0.77
CUX1-221ENST00000622516 ERN2Q76MJ5 926 aaKnown RBP10.25□□□□□ -0.77
CUX1-221ENST00000622516 VTCN1Q7Z7D3 282 aa10.25□□□□□ -0.77
CUX1-221ENST00000622516 GALNT15Q8N3T1 639 aa10.25□□□□□ -0.77
CUX1-221ENST00000622516 PACRGLQ8N7B6 248 aa10.25□□□□□ -0.77
CUX1-221ENST00000622516 OR56A3Q8NH54 315 aa10.25□□□□□ -0.77
CUX1-221ENST00000622516 WFIKKN2Q8TEU8 576 aa10.25□□□□□ -0.77
CUX1-221ENST00000622516 ATL1Q8WXF7 558 aa10.25□□□□□ -0.77
CUX1-221ENST00000622516 TESCQ96BS2 214 aa10.25□□□□□ -0.77
CUX1-221ENST00000622516 BARD1Q99728 777 aaKnown RBP10.25□□□□□ -0.77
CUX1-221ENST00000622516 SH3GL1Q99961 368 aa10.25□□□□□ -0.77
CUX1-221ENST00000622516 KXD1Q9BQD3 176 aa10.25□□□□□ -0.77
CUX1-221ENST00000622516 TMEM245Q9H330 911 aa10.25□□□□□ -0.77
CUX1-221ENST00000622516 TMEM165Q9HC07 324 aa10.25□□□□□ -0.77
CUX1-221ENST00000622516 PRSS16Q9NQE7 514 aa10.25□□□□□ -0.77
CUX1-221ENST00000622516 DCAF13Q9NV06 445 aaKnown RBP10.25□□□□□ -0.77
CUX1-221ENST00000622516 EXD2Q9NVH0 621 aa10.25□□□□□ -0.77
CUX1-221ENST00000622516 SPATA6Q9NWH7 488 aaPredicted RBP10.25□□□□□ -0.77
CUX1-221ENST00000622516 ASF1AQ9Y294 204 aa10.25□□□□□ -0.77
CUX1-221ENST00000622516 DGKBQ9Y6T7 804 aa10.25□□□□□ -0.77
CUX1-221ENST00000622516 SMIM31A0A1B0GVY4 71 aa10.25□□□□□ -0.77
CUX1-221ENST00000622516 SCN2BO60939 215 aa10.25□□□□□ -0.77
CUX1-221ENST00000622516 E2F6O75461 281 aa10.25□□□□□ -0.77
CUX1-221ENST00000622516 PRPS1L1P21108 318 aa10.25□□□□□ -0.77
CUX1-221ENST00000622516 MYF6P23409 242 aa10.25□□□□□ -0.77
CUX1-221ENST00000622516 NR1H2P55055 460 aa10.25□□□□□ -0.77
CUX1-221ENST00000622516 LRIF1Q5T3J3 769 aa10.25□□□□□ -0.77
CUX1-221ENST00000622516 GRHL2Q6ISB3 625 aa10.25□□□□□ -0.77
CUX1-221ENST00000622516 VITQ6UXI7 678 aa10.25□□□□□ -0.77
CUX1-221ENST00000622516 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP10.25□□□□□ -0.77
CUX1-221ENST00000622516 SLCO4C1Q6ZQN7 724 aa10.25□□□□□ -0.77
CUX1-221ENST00000622516 ZDHHC13Q8IUH4 622 aa10.25□□□□□ -0.77
CUX1-221ENST00000622516 CSGALNACT1Q8TDX6 532 aa10.25□□□□□ -0.77
CUX1-221ENST00000622516 SGCDQ92629 289 aa10.25□□□□□ -0.77
CUX1-221ENST00000622516 MPP4Q96JB8 637 aa10.25□□□□□ -0.77
CUX1-221ENST00000622516 CCDC115Q96NT0 180 aa10.25□□□□□ -0.77
CUX1-221ENST00000622516 TMEM121BQ9BXQ6 578 aaPredicted RBP10.25□□□□□ -0.77
CUX1-221ENST00000622516 TRIM39Q9HCM9 518 aa10.25□□□□□ -0.77
CUX1-221ENST00000622516 AASDHPPTQ9NRN7 309 aa10.25□□□□□ -0.77
CUX1-221ENST00000622516 RAD18Q9NS91 495 aa10.25□□□□□ -0.77
CUX1-221ENST00000622516 SERGEFQ9UGK8 458 aa10.25□□□□□ -0.77
CUX1-221ENST00000622516 TMED5Q9Y3A6 229 aa10.25□□□□□ -0.77
CUX1-221ENST00000622516 OR1A2Q9Y585 309 aa10.25□□□□□ -0.77
CUX1-221ENST00000622516 KIF26AQ9ULI4 1882 aaPredicted RBP10.24□□□□□ -0.77
CUX1-221ENST00000622516 hCG_2039718K7EN88 272 aa10.24□□□□□ -0.77
CUX1-221ENST00000622516 MID1O15344 667 aa10.24□□□□□ -0.77
CUX1-221ENST00000622516 LINC01565O15544 149 aa10.24□□□□□ -0.77
CUX1-221ENST00000622516 ALBP02768 609 aa10.24□□□□□ -0.77
CUX1-221ENST00000622516 ALPLP05186 524 aa10.24□□□□□ -0.77
CUX1-221ENST00000622516 GJA4P35212 333 aa10.24□□□□□ -0.77
CUX1-221ENST00000622516 CAPGP40121 348 aa10.24□□□□□ -0.77
CUX1-221ENST00000622516 OPRD1P41143 372 aa10.24□□□□□ -0.77
CUX1-221ENST00000622516 SEC13P55735 322 aa10.24□□□□□ -0.77
CUX1-221ENST00000622516 IL1RL1Q01638 556 aa10.24□□□□□ -0.77
CUX1-221ENST00000622516 TAP2Q03519 686 aa10.24□□□□□ -0.77
CUX1-221ENST00000622516 DUS1LQ6P1R4 473 aaKnown RBP10.24□□□□□ -0.77
CUX1-221ENST00000622516 HEATR4Q86WZ0 1026 aa10.24□□□□□ -0.77
CUX1-221ENST00000622516 CHPFQ8IZ52 775 aa10.24□□□□□ -0.77
CUX1-221ENST00000622516 NRSN1Q8IZ57 195 aa10.24□□□□□ -0.77
CUX1-221ENST00000622516 MMP21Q8N119 569 aa10.24□□□□□ -0.77
CUX1-221ENST00000622516 RBM38Q9H0Z9 239 aaKnown RBP10.24□□□□□ -0.77
CUX1-221ENST00000622516 RWDD3Q9Y3V2 267 aa10.24□□□□□ -0.77
CUX1-221ENST00000622516 NINQ8N4C6 2090 aa10.24□□□□□ -0.77
CUX1-221ENST00000622516 DOCK8Q8NF50 2099 aa10.24□□□□□ -0.77
CUX1-221ENST00000622516 EPOPA6NHQ4 379 aa10.24□□□□□ -0.77
CUX1-221ENST00000622516 H0YIV9 168 aa10.24□□□□□ -0.77
CUX1-221ENST00000622516 QSOX1O00391 747 aa10.24□□□□□ -0.77
CUX1-221ENST00000622516 PAPLNO95428 1278 aa10.24□□□□□ -0.77
CUX1-221ENST00000622516 HOXB9P17482 250 aaPredicted RBP10.24□□□□□ -0.77
CUX1-221ENST00000622516 PRPH2P23942 346 aa10.24□□□□□ -0.77
CUX1-221ENST00000622516 SHMT2P34897 504 aa10.24□□□□□ -0.77
CUX1-221ENST00000622516 PIGAP37287 484 aa10.24□□□□□ -0.77
CUX1-221ENST00000622516 CYP4F2P78329 520 aa10.24□□□□□ -0.77
CUX1-221ENST00000622516 ELP6Q0PNE2 266 aa10.24□□□□□ -0.77
CUX1-221ENST00000622516 GTF2H3Q13889 308 aa10.24□□□□□ -0.77
CUX1-221ENST00000622516 KCNC3Q14003 757 aa10.24□□□□□ -0.77
CUX1-221ENST00000622516 DUOXA1Q1HG43 343 aa10.24□□□□□ -0.77
CUX1-221ENST00000622516 ZNF658BQ4V348 819 aaPredicted RBP10.24□□□□□ -0.77
CUX1-221ENST00000622516 ATG9BQ674R7 924 aa10.24□□□□□ -0.77
CUX1-221ENST00000622516 CAPN13Q6MZZ7 669 aaPredicted RBP10.24□□□□□ -0.77
CUX1-221ENST00000622516 TTC23LQ6PF05 361 aa10.24□□□□□ -0.77
CUX1-221ENST00000622516 RTL10Q7L3V2 364 aa10.24□□□□□ -0.77
CUX1-221ENST00000622516 UBE2Q1Q7Z7E8 422 aa10.24□□□□□ -0.77
CUX1-221ENST00000622516 GPR149Q86SP6 731 aa10.24□□□□□ -0.77
CUX1-221ENST00000622516 CALHM3Q86XJ0 350 aa10.24□□□□□ -0.77
CUX1-221ENST00000622516 TMIEQ8NEW7 156 aa10.24□□□□□ -0.77
CUX1-221ENST00000622516 WDR48Q8TAF3 677 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms