RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 CABS1Q96KC9 395 aa5.77□□□□□ -1.49
VRK3-220ENST00000600259 CALR3Q96L12 384 aaKnown RBP5.77□□□□□ -1.49
VRK3-220ENST00000600259 ZNF354BQ96LW1 612 aa5.77□□□□□ -1.49
VRK3-220ENST00000600259 CCDC138Q96M89 665 aa5.77□□□□□ -1.49
VRK3-220ENST00000600259 FRMD6Q96NE9 622 aa5.77□□□□□ -1.49
VRK3-220ENST00000600259 PKP4Q99569 1192 aa5.77□□□□□ -1.49
VRK3-220ENST00000600259 ANP32EQ9BTT0 268 aa5.77□□□□□ -1.49
VRK3-220ENST00000600259 YIPF2Q9BWQ6 316 aa5.77□□□□□ -1.49
VRK3-220ENST00000600259 MRPS30Q9NP92 439 aaKnown RBP5.77□□□□□ -1.49
VRK3-220ENST00000600259 SPATA7Q9P0W8 599 aa5.77□□□□□ -1.49
VRK3-220ENST00000600259 NPIPA1Q9UND3 350 aa5.77□□□□□ -1.49
VRK3-220ENST00000600259 PRRC2AP48634 2157 aaKnown RBP5.77□□□□□ -1.49
VRK3-220ENST00000600259 ABCA2Q9BZC7 2435 aa5.77□□□□□ -1.49
VRK3-220ENST00000600259 ZNF469Q96JG9 3925 aaPredicted RBP5.76□□□□□ -1.49
VRK3-220ENST00000600259 KCNE1BA0A087WTH5 132 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 SOWAHDA6NJG2 315 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 A8MUI8 341 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 E9PLN8 166 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 H0YIG0 161 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 GFYI3L273 518 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 TTI1O43156 1089 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 PRPF4O43172 522 aaKnown RBP eCLIP5.76□□□□□ -1.49
VRK3-220ENST00000600259 DNAJB6O75190 326 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 NIPSNAP2O75323 286 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 NSA2O95478 260 aaKnown RBP5.76□□□□□ -1.49
VRK3-220ENST00000600259 SP1P08047 785 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 CYC1P08574 325 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 TPM1P09493 284 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 C8orf89P0DMQ9 161 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 MYBL2P10244 700 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 ESRRAP11474 423 aaPredicted RBP5.76□□□□□ -1.49
VRK3-220ENST00000600259 HOXB4P17483 251 aaPredicted RBP5.76□□□□□ -1.49
VRK3-220ENST00000600259 NMBRP28336 390 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 ATP5DP30049 168 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 PPARGP37231 505 aaPredicted RBP5.76□□□□□ -1.49
VRK3-220ENST00000600259 FDFT1P37268 417 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 ANP32AP39687 249 aaKnown RBP5.76□□□□□ -1.49
VRK3-220ENST00000600259 BCL6P41182 706 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 TTPAP49638 278 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 AP2B1P63010 937 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 PRAMEP78395 509 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 CRADDP78560 199 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 HSF1Q00613 529 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 ALDH6A1Q02252 535 aaKnown RBP5.76□□□□□ -1.49
VRK3-220ENST00000600259 TFF3Q07654 80 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 GTF3C1Q12789 2109 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 TMED2Q15363 201 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 OR1C1Q15619 314 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 LONRF1Q17RB8 773 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 ANKRD20A4Q4UJ75 823 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 PCID2Q5JVF3 399 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 ICE2Q659A1 982 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 PTRHD1Q6GMV3 140 aaKnown RBP5.76□□□□□ -1.49
VRK3-220ENST00000600259 RAD9BQ6WBX8 426 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 OTOAQ7RTW8 1153 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 GALNTL5Q7Z4T8 443 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 PNPLA5Q7Z6Z6 429 aaPredicted RBP5.76□□□□□ -1.49
VRK3-220ENST00000600259 ANKRD37Q7Z713 158 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 LRRC6Q86X45 466 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 CRLF3Q8IUI8 442 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 PLD3Q8IV08 490 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 CEP97Q8IW35 865 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 MARVELD2Q8N4S9 558 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 FBXO15Q8NCQ5 510 aaPredicted RBP5.76□□□□□ -1.49
VRK3-220ENST00000600259 PLPP5Q8NEB5 264 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 OR9A4Q8NGU2 314 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 SUN3Q8TAQ9 357 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 M1APQ8TC57 530 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 AGAP11Q8TF27 550 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 ZNF480Q8WV37 535 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 ATG4AQ8WYN0 398 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 LPGAT1Q92604 370 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 PANX3Q96QZ0 392 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 SLC30A3Q99726 388 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 VKORC1Q9BQB6 163 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 TMUB1Q9BVT8 246 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 TSSK1BQ9BXA7 367 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 DRC3Q9H069 523 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 TSPAN10Q9H1Z9 355 aaPredicted RBP5.76□□□□□ -1.49
VRK3-220ENST00000600259 TRIM45Q9H8W5 580 aaPredicted RBP5.76□□□□□ -1.49
VRK3-220ENST00000600259 GPAMQ9HCL2 828 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 MMP25Q9NPA2 562 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 NPDC1Q9NQX5 325 aaPredicted RBP5.76□□□□□ -1.49
VRK3-220ENST00000600259 KLHL1Q9NR64 748 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 LANCL2Q9NS86 450 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 CATSPERZQ9NTU4 200 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 TNFRSF10DQ9UBN6 386 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 TEKT2Q9UIF3 430 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 PACSIN2Q9UNF0 486 aaPredicted RBP5.76□□□□□ -1.49
VRK3-220ENST00000600259 MED16Q9Y2X0 877 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 NEU2Q9Y3R4 380 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 MRFAP1Q9Y605 127 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 CPAMD8Q8IZJ3 1885 aa5.76□□□□□ -1.49
VRK3-220ENST00000600259 DNHD1Q96M86 4753 aa5.75□□□□□ -1.49
VRK3-220ENST00000600259 HEATR5BQ9P2D3 2071 aa5.75□□□□□ -1.49
VRK3-220ENST00000600259 FAM227AF5H4B4 570 aa5.75□□□□□ -1.49
VRK3-220ENST00000600259 H7BY64 318 aa5.75□□□□□ -1.49
VRK3-220ENST00000600259 CDK2AP1O14519 115 aa5.75□□□□□ -1.49
VRK3-220ENST00000600259 TXNDC9O14530 226 aa5.75□□□□□ -1.49
VRK3-220ENST00000600259 HAT1O14929 419 aa5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms