RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 CYTH4Q9UIA0 394 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 ZNF639Q9UID6 485 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 IFT52Q9Y366 437 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 PSAT1Q9Y617 370 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 MRPS18BQ9Y676 258 aaKnown RBP4.04□□□□□ -1.76
LIG3-211ENST00000588713 USP3Q9Y6I4 520 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 DOCK9Q9BZ29 2069 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 TBC1D3DA0A087WVF3 549 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 TBC1D3IA0A087WXS9 549 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 TBC1D3EA0A087X179 549 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 A0A087X1B8 175 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 TBC1D3KA0A087X1G2 549 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 A0A0G2JK05 382 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 LOC101059948A0A1B0GTJ6 334 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 SLC12A8A0AV02 714 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 MAGEB16A2A368 324 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 ZNF840PA6NDX5 716 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 TBC1D3FA6NER0 549 aaPredicted RBP4.03□□□□□ -1.76
LIG3-211ENST00000588713 SAGE2PA6NJ88 616 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 C16orf96A6NNT2 1141 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 TARM1B6A8C7 271 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 TBC1D3LB9A6J9 549 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 INAFM1C9JVW0 142 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 STX16-NPEPL1H3BU86 382 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 C19orf84I3L1E1 186 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 J3QRK9 145 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 EI24O14681 340 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 SPRY1O43609 319 aaPredicted RBP4.03□□□□□ -1.76
LIG3-211ENST00000588713 MFSD11O43934 449 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 NRP2O60462 931 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 MATN4O95460 622 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 AP2A1O95782 977 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 PTTG1O95997 202 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 ALBP02768 609 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 LTFP02788 710 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 C2P06681 752 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 TBC1D3HP0C7X1 549 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 CCL4P13236 92 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 GFAPP14136 432 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 PFKLP17858 780 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 NELFEP18615 380 aaKnown RBP4.03□□□□□ -1.76
LIG3-211ENST00000588713 IL4RP24394 825 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 ATP5F1P24539 256 aaPredicted RBP4.03□□□□□ -1.76
LIG3-211ENST00000588713 ITGB7P26010 798 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 CD40LGP29965 261 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 DNAJA1P31689 397 aaKnown RBP4.03□□□□□ -1.76
LIG3-211ENST00000588713 CCKBRP32239 447 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 OPRL1P41146 370 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 GRIA3P42263 894 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 GATA4P43694 442 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 KRT6CP48668 564 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 CCR5P51681 352 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 SLC7A2P52569 658 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 EFNA5P52803 228 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 ITGA1P56199 1179 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 SNX16P57768 344 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 IRF9Q00978 393 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 TSPY1Q01534 308 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 GNA12Q03113 381 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 GBE1Q04446 702 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 TNP2Q05952 138 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 INCA1Q0VD86 236 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 SMARCB1Q12824 385 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 RALGDSQ12967 914 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 NME3Q13232 169 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 CAMK2GQ13555 558 aaPredicted RBP4.03□□□□□ -1.76
LIG3-211ENST00000588713 SLC12A1Q13621 1099 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 ERV3-1Q14264 604 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 ACOX1Q15067 660 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 TAF5Q15542 800 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 KCNJ8Q15842 424 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 NEDD8Q15843 81 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 FXNQ16595 210 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 ARL13AQ5H913 290 aaPredicted RBP4.03□□□□□ -1.76
LIG3-211ENST00000588713 ZNF667Q5HYK9 610 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 WSCD1Q658N2 575 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 ZNF776Q68DI1 518 aaPredicted RBP4.03□□□□□ -1.76
LIG3-211ENST00000588713 SLC6A19Q695T7 634 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 TBC1D3GQ6DHY5 549 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 NXNQ6DKJ4 435 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 GTF2IRD2BQ6EKJ0 949 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 XAF1Q6GPH4 301 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 TBC1D3CQ6IPX1 549 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 TRNP1Q6NT89 227 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 TUBA3EQ6PEY2 450 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 PARS2Q7L3T8 475 aaKnown RBP4.03□□□□□ -1.76
LIG3-211ENST00000588713 PRSS48Q7RTY5 328 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 KDELC2Q7Z4H8 507 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 TMEM135Q86UB9 458 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 AKAP14Q86UN6 197 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 GTF2IRD2Q86UP8 949 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 KCNMB4Q86W47 210 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 CCDC117Q8IWD4 279 aaPredicted RBP4.03□□□□□ -1.76
LIG3-211ENST00000588713 ZC3H7AQ8IWR0 971 aaKnown RBP4.03□□□□□ -1.76
LIG3-211ENST00000588713 CNTN4Q8IWV2 1026 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 KLHDC8BQ8IXV7 354 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 TBC1D21Q8IYX1 336 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 ADGRG5Q8IZF4 528 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 TBC1D3Q8IZP1 549 aaPredicted RBP4.03□□□□□ -1.76
LIG3-211ENST00000588713 CADM3Q8N126 398 aa4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms