RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 APOPT1Q96IL0 206 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 ZNF599Q96NL3 588 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 SERPINB12Q96P63 405 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 SPAG5Q96R06 1193 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 FMO2Q99518 471 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 VAT1LQ9HCJ6 419 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 OLFML3Q9NRN5 406 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 INTS9Q9NV88 658 aaKnown RBP3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 DDX25Q9UHL0 483 aaKnown RBP3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 NARFQ9UHQ1 456 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 PCDHGB4Q9UN71 923 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 PACSIN2Q9UNF0 486 aaPredicted RBP3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 STX8Q9UNK0 236 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 LRRC42Q9Y546 428 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 SNX8Q9Y5X2 465 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 ALG6Q9Y672 507 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 ABCA3Q99758 1704 aa3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 TNRC6CQ9HCJ0 1690 aaKnown RBP3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 TP53BP1Q12888 1972 aaPredicted RBP3.8□□□□□ -1.8
SMCHD1-208ENST00000583344 KIF13BQ9NQT8 1826 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 COL14A1Q05707 1796 aaKnown RBP3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 GAKO14976 1311 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 FRMPD4Q14CM0 1322 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 GOLGA6L10A0A0M3HER8 536 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 E7ENQ6 273 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 TSPAN4O14817 238 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 ZBTB5O15062 677 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 MAPK13O15264 365 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 MAGEB2O15479 319 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 RGS16O15492 202 aaPredicted RBP3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 RIPK2O43353 540 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 MED24O75448 989 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 CRLF1O75462 422 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 ATP5HO75947 161 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 AKAP3O75969 853 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 ANP32DO95626 131 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 HSPA4LO95757 839 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 FGGP02679 453 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 SHBGP04278 402 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 CLTBP09497 229 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 ACTN1P12814 892 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 DDX5P17844 614 aaKnown RBP3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 NR2F2P24468 414 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 ATP5DP30049 168 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 GCKP35557 465 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 EPS15P42566 896 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 IFI35P80217 286 aaPredicted RBP3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 CAV1Q03135 178 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 ACVR2BQ13705 512 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 PPP1R7Q15435 360 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 ZKSCAN8Q15776 578 aaPredicted RBP3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 HIST2H2ACQ16777 129 aaPredicted RBP3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 PARP6Q2NL67 630 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 CCNYL2Q5T2Q4 361 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 HECTD3Q5T447 861 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 GGNBP1Q5YKI7 109 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 TXNDC8Q6A555 127 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 C11orf63Q6NUN7 778 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 METTL2BQ6P1Q9 378 aaKnown RBP3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 SLC27A1Q6PCB7 646 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 C15orf39Q6ZRI6 1047 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 QSOX2Q6ZRP7 698 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 NOTCH2NLQ7Z3S9 236 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 GPBP1Q86WP2 473 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 CATSPER3Q86XQ3 398 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 TAGAPQ8N103 731 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 TEX9Q8N6V9 391 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 PRELID2Q8N945 189 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 OR52I2Q8NH67 350 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 ERMNQ8TAM6 284 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 ETNPPLQ8TBG4 499 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 U2AF1L4Q8WU68 220 aaKnown RBP3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 CKAP2Q8WWK9 683 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 TM9SF4Q92544 642 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 N4BP2L2Q92802 583 aaPredicted RBP3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 METTL2AQ96IZ6 378 aaKnown RBP3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 TMEM237Q96Q45 408 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 AGPAT1Q99943 283 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 STRA6Q9BX79 667 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 FGFBP2Q9BYJ0 223 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 GPR88Q9GZN0 384 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 NSRP1Q9H0G5 558 aaKnown RBP3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 CPVLQ9H3G5 476 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 CENPHQ9H3R5 247 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 TFB2MQ9H5Q4 396 aaKnown RBP3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 LRRC19Q9H756 370 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 ZWILCHQ9H900 591 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 PSTPIP2Q9H939 334 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 CD209Q9NNX6 404 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 HOMER3Q9NSC5 361 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 SEPT11Q9NVA2 429 aaKnown RBP3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 ZNF624Q9P2J8 865 aaPredicted RBP3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 MTRF1LQ9UGC7 380 aaKnown RBP3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 RASAL2Q9UJF2 1139 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 DNAJC12Q9UKB3 198 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 PADI3Q9ULW8 664 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 RPL26L1Q9UNX3 145 aaKnown RBP3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 ARL2BPQ9Y2Y0 163 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 SMAD5-AS1Q9Y6J3 95 aa3.79□□□□□ -1.8
SMCHD1-208ENST00000583344 TNS1Q9HBL0 1735 aaKnown RBP3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms