RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 CFAP206Q8IYR0 622 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 ARL14EPQ8N8R7 260 aaPredicted RBP5.55□□□□□ -1.52
VPS53-219ENST00000576019 LRRC57Q8N9N7 239 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 MCPH1Q8NEM0 835 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 EXD1Q8NHP7 514 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 SLC5A11Q8WWX8 675 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 ERGIC1Q969X5 290 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 CLDN23Q96B33 292 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 LENG9Q96B70 501 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 STAMBPL1Q96FJ0 436 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 MYADMQ96S97 322 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 SMC6Q96SB8 1091 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 NAP1L3Q99457 506 aaPredicted RBP5.55□□□□□ -1.52
VPS53-219ENST00000576019 VPS37BQ9H9H4 285 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 GPN1Q9HCN4 374 aaPredicted RBP5.55□□□□□ -1.52
VPS53-219ENST00000576019 MLXIPLQ9NP71 852 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 PALMDQ9NP74 551 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 MYNNQ9NPC7 610 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 CENPMQ9NSP4 180 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 FAM212BQ9NTI7 297 aaPredicted RBP5.55□□□□□ -1.52
VPS53-219ENST00000576019 ACSS1Q9NUB1 689 aaPredicted RBP5.55□□□□□ -1.52
VPS53-219ENST00000576019 SMC3Q9UQE7 1217 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 B3GALT5Q9Y2C3 310 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 PLXNA4Q9HCM2 1894 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 SVILO95425 2214 aa5.55□□□□□ -1.52
VPS53-219ENST00000576019 CRYBG3Q68DQ2 2970 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 TRBV5-7A0A0A0MS05 114 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 SPAARA0A1B0GVQ0 90 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 DENND3A2RUS2 1198 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 ANKUB1A6NFN9 424 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 LINC00473A8K010 186 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 M0QZ24 198 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 TLR4O00206 839 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 SOCS6O14544 535 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 GMFGO60234 142 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 ZNF202O95125 648 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 CXCL14O95715 111 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 DANCRP0C864 163 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 UNGP13051 313 aaPredicted RBP5.54□□□□□ -1.52
VPS53-219ENST00000576019 COMTP21964 271 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 BMP5P22003 454 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 MAGEB1P43366 347 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 RPS9P46781 194 aaKnown RBP5.54□□□□□ -1.52
VPS53-219ENST00000576019 SIM1P81133 766 aaPredicted RBP5.54□□□□□ -1.52
VPS53-219ENST00000576019 PMPCAQ10713 525 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 SRSF5Q13243 272 aaKnown RBP5.54□□□□□ -1.52
VPS53-219ENST00000576019 TOB2Q14106 344 aaPredicted RBP5.54□□□□□ -1.52
VPS53-219ENST00000576019 TSTD2Q5T7W7 516 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 RIPPLY2Q5TAB7 128 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 RAET1GQ6H3X3 334 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 TCEAL6Q6IPX3 200 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 CYB5D1Q6P9G0 228 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 AAGABQ6PD74 315 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 CCBE1Q6UXH8 406 aaPredicted RBP5.54□□□□□ -1.52
VPS53-219ENST00000576019 LRIG3Q6UXM1 1119 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 RBM44Q6ZP01 1051 aaKnown RBP5.54□□□□□ -1.52
VPS53-219ENST00000576019 Q6ZSN1 163 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 TRILQ7L0X0 811 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 MEPCEQ7L2J0 689 aaKnown RBP5.54□□□□□ -1.52
VPS53-219ENST00000576019 TMC8Q8IU68 726 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 RASGEF1CQ8N431 466 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 SLC44A3Q8N4M1 653 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 L3MBTL4Q8NA19 623 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 OR2AJ1Q8NGZ0 328 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 BBS10Q8TAM1 723 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 RNF139Q8WU17 664 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 ARHGAP45Q92619 1136 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 TCEAL3Q969E4 200 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 ERLEC1Q96DZ1 483 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 CCDC17Q96LX7 622 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 CFAP53Q96M91 514 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 Q96MF0 132 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 FEVQ99581 238 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 ZNF577Q9BSK1 485 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 TM2D2Q9BX73 214 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 CARD9Q9H257 536 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 PPP1R3EQ9H7J1 279 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 SLC2A4RGQ9NR83 387 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 CYSLTR2Q9NS75 346 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 DPP3Q9NY33 737 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 PPP4R1LQ9P1A2 415 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 IPO11Q9UI26 975 aaKnown RBP5.54□□□□□ -1.52
VPS53-219ENST00000576019 ST3GAL5Q9UNP4 418 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 RAP2CQ9Y3L5 183 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 HBS1LQ9Y450 684 aaKnown RBP5.54□□□□□ -1.52
VPS53-219ENST00000576019 WNT6Q9Y6F9 365 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 MCM3APO60318 1980 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 MYH13Q9UKX3 1938 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 ATG2BQ96BY7 2078 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 MED13LQ71F56 2210 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 SDK1Q7Z5N4 2213 aa5.54□□□□□ -1.52
VPS53-219ENST00000576019 AKAP9Q99996 3911 aa5.53□□□□□ -1.52
VPS53-219ENST00000576019 FAM90A10PA6NDY2 464 aa5.53□□□□□ -1.52
VPS53-219ENST00000576019 NPEPPSL1A6NEC2 478 aa5.53□□□□□ -1.52
VPS53-219ENST00000576019 F8W810 466 aa5.53□□□□□ -1.52
VPS53-219ENST00000576019 SLC25A27O95847 323 aa5.53□□□□□ -1.52
VPS53-219ENST00000576019 CBSLP0DN79 551 aa5.53□□□□□ -1.52
VPS53-219ENST00000576019 SPP1P10451 314 aa5.53□□□□□ -1.52
VPS53-219ENST00000576019 NR1D1P20393 614 aa5.53□□□□□ -1.52
VPS53-219ENST00000576019 NR4A1P22736 598 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms