RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 KCNE1BA0A087WTH5 132 aa12.78□□□□□ -0.36
CLK3-216ENST00000564468 NPEPPSL1A6NEC2 478 aa12.78□□□□□ -0.36
CLK3-216ENST00000564468 CDC7O00311 574 aa12.78□□□□□ -0.36
CLK3-216ENST00000564468 HAT1O14929 419 aa12.78□□□□□ -0.36
CLK3-216ENST00000564468 KLF7O75840 302 aaPredicted RBP12.78□□□□□ -0.36
CLK3-216ENST00000564468 C1QAP02745 245 aa12.78□□□□□ -0.36
CLK3-216ENST00000564468 CCDC166P0CW27 439 aa12.78□□□□□ -0.36
CLK3-216ENST00000564468 NPPBP16860 134 aa12.78□□□□□ -0.36
CLK3-216ENST00000564468 ITGAXP20702 1163 aa12.78□□□□□ -0.36
CLK3-216ENST00000564468 PGGT1BP53609 377 aa12.78□□□□□ -0.36
CLK3-216ENST00000564468 RAB10P61026 200 aa12.78□□□□□ -0.36
CLK3-216ENST00000564468 IL10RAQ13651 578 aa12.78□□□□□ -0.36
CLK3-216ENST00000564468 PPP1R3AQ16821 1122 aa12.78□□□□□ -0.36
CLK3-216ENST00000564468 ATG14Q6ZNE5 492 aa12.78□□□□□ -0.36
CLK3-216ENST00000564468 MED25Q71SY5 747 aa12.78□□□□□ -0.36
CLK3-216ENST00000564468 TCAIMQ8N3R3 496 aa12.78□□□□□ -0.36
CLK3-216ENST00000564468 TMEM102Q8N9M5 508 aaPredicted RBP12.78□□□□□ -0.36
CLK3-216ENST00000564468 C9orf43Q8TAL5 461 aaPredicted RBP12.78□□□□□ -0.36
CLK3-216ENST00000564468 ADAMTS17Q8TE56 1095 aa12.78□□□□□ -0.36
CLK3-216ENST00000564468 CYTH2Q99418 400 aa12.78□□□□□ -0.36
CLK3-216ENST00000564468 SLC26A1Q9H2B4 701 aa12.78□□□□□ -0.36
CLK3-216ENST00000564468 CAB39LQ9H9S4 337 aa12.78□□□□□ -0.36
CLK3-216ENST00000564468 ACSS2Q9NR19 701 aa12.78□□□□□ -0.36
CLK3-216ENST00000564468 TLK1Q9UKI8 766 aa12.78□□□□□ -0.36
CLK3-216ENST00000564468 G3BP2Q9UN86 482 aaKnown RBP12.78□□□□□ -0.36
CLK3-216ENST00000564468 DYRK1BQ9Y463 629 aa12.78□□□□□ -0.36
CLK3-216ENST00000564468 DOCK10Q96BY6 2186 aa12.77□□□□□ -0.36
CLK3-216ENST00000564468 PEX12O00623 359 aa12.77□□□□□ -0.37
CLK3-216ENST00000564468 NRP2O60462 931 aa12.77□□□□□ -0.37
CLK3-216ENST00000564468 CRABP2P29373 138 aa12.77□□□□□ -0.37
CLK3-216ENST00000564468 CCR8P51685 355 aa12.77□□□□□ -0.37
CLK3-216ENST00000564468 CSNK1G2P78368 415 aa12.77□□□□□ -0.37
CLK3-216ENST00000564468 OCA2Q04671 838 aa12.77□□□□□ -0.37
CLK3-216ENST00000564468 FAM53BQ14153 422 aa12.77□□□□□ -0.37
CLK3-216ENST00000564468 CSHL1Q14406 222 aa12.77□□□□□ -0.37
CLK3-216ENST00000564468 SLC9A5Q14940 896 aa12.77□□□□□ -0.37
CLK3-216ENST00000564468 SLMAPQ14BN4 828 aa12.77□□□□□ -0.37
CLK3-216ENST00000564468 TSNQ15631 228 aaKnown RBP12.77□□□□□ -0.37
CLK3-216ENST00000564468 ZKSCAN8Q15776 578 aaPredicted RBP12.77□□□□□ -0.37
CLK3-216ENST00000564468 CDKL4Q5MAI5 379 aa12.77□□□□□ -0.37
CLK3-216ENST00000564468 RAPH1Q70E73 1250 aa12.77□□□□□ -0.37
CLK3-216ENST00000564468 TBC1D1Q86TI0 1168 aaPredicted RBP12.77□□□□□ -0.37
CLK3-216ENST00000564468 IFT20Q8IY31 132 aa12.77□□□□□ -0.37
CLK3-216ENST00000564468 CAMKVQ8NCB2 501 aa12.77□□□□□ -0.37
CLK3-216ENST00000564468 ABHD11Q8NFV4 315 aa12.77□□□□□ -0.37
CLK3-216ENST00000564468 ANKRD49Q8WVL7 239 aa12.77□□□□□ -0.37
CLK3-216ENST00000564468 PYCR2Q96C36 320 aa12.77□□□□□ -0.37
CLK3-216ENST00000564468 FER1L6-AS2Q96M78 137 aa12.77□□□□□ -0.37
CLK3-216ENST00000564468 RUVBL1Q9Y265 456 aaKnown RBP12.77□□□□□ -0.37
CLK3-216ENST00000564468 KCNE2Q9Y6J6 123 aa12.77□□□□□ -0.37
CLK3-216ENST00000564468 UBR5O95071 2799 aaPredicted RBP12.76□□□□□ -0.37
CLK3-216ENST00000564468 SCN2AQ99250 2005 aa12.76□□□□□ -0.37
CLK3-216ENST00000564468 ARGFXA6NJG6 315 aa12.76□□□□□ -0.37
CLK3-216ENST00000564468 PHGDHO43175 533 aaKnown RBP12.76□□□□□ -0.37
CLK3-216ENST00000564468 KLHL41O60662 606 aa12.76□□□□□ -0.37
CLK3-216ENST00000564468 WISP3O95389 354 aaPredicted RBP12.76□□□□□ -0.37
CLK3-216ENST00000564468 ATXN8OSP0DMR3 200 aa12.76□□□□□ -0.37
CLK3-216ENST00000564468 CDH1P12830 882 aa12.76□□□□□ -0.37
CLK3-216ENST00000564468 FBLP22087 321 aaKnown RBP12.76□□□□□ -0.37
CLK3-216ENST00000564468 OTX2P32243 289 aa12.76□□□□□ -0.37
CLK3-216ENST00000564468 SLC26A3P40879 764 aa12.76□□□□□ -0.37
CLK3-216ENST00000564468 OR1D4P47884 311 aa12.76□□□□□ -0.37
CLK3-216ENST00000564468 AVPR1BP47901 424 aa12.76□□□□□ -0.37
CLK3-216ENST00000564468 NFKB2Q00653 900 aa12.76□□□□□ -0.37
CLK3-216ENST00000564468 TGFBIQ15582 683 aa12.76□□□□□ -0.37
CLK3-216ENST00000564468 NKG7Q16617 165 aa12.76□□□□□ -0.37
CLK3-216ENST00000564468 TCTN3Q6NUS6 607 aa12.76□□□□□ -0.37
CLK3-216ENST00000564468 THOC6Q86W42 341 aaKnown RBP12.76□□□□□ -0.37
CLK3-216ENST00000564468 GPSM1Q86YR5 675 aa12.76□□□□□ -0.37
CLK3-216ENST00000564468 SLC5A11Q8WWX8 675 aa12.76□□□□□ -0.37
CLK3-216ENST00000564468 ABHD17AQ96GS6 310 aa12.76□□□□□ -0.37
CLK3-216ENST00000564468 UBXN10Q96LJ8 280 aa12.76□□□□□ -0.37
CLK3-216ENST00000564468 SARGQ9BW04 601 aa12.76□□□□□ -0.37
CLK3-216ENST00000564468 CAPS2Q9BXY5 557 aa12.76□□□□□ -0.37
CLK3-216ENST00000564468 DRC3Q9H069 523 aa12.76□□□□□ -0.37
CLK3-216ENST00000564468 ING2Q9H160 280 aa12.76□□□□□ -0.37
CLK3-216ENST00000564468 ACSS3Q9H6R3 686 aa12.76□□□□□ -0.37
CLK3-216ENST00000564468 CNOT10Q9H9A5 744 aaKnown RBP12.76□□□□□ -0.37
CLK3-216ENST00000564468 NMRAL1Q9HBL8 299 aa12.76□□□□□ -0.37
CLK3-216ENST00000564468 SLC22A11Q9NSA0 550 aa12.76□□□□□ -0.37
CLK3-216ENST00000564468 NINJ2Q9NZG7 142 aa12.76□□□□□ -0.37
CLK3-216ENST00000564468 ZNF282Q9UDV7 671 aaPredicted RBP12.76□□□□□ -0.37
CLK3-216ENST00000564468 IKZF3Q9UKT9 509 aa12.76□□□□□ -0.37
CLK3-216ENST00000564468 IKBKGQ9Y6K9 419 aa12.76□□□□□ -0.37
CLK3-216ENST00000564468 TNRC6AQ8NDV7 1962 aaKnown RBP12.76□□□□□ -0.37
CLK3-216ENST00000564468 TRBC2A0A5B9 178 aa12.75□□□□□ -0.37
CLK3-216ENST00000564468 CCDC189A1A4V9 331 aa12.75□□□□□ -0.37
CLK3-216ENST00000564468 FAM155BO75949 473 aa12.75□□□□□ -0.37
CLK3-216ENST00000564468 IPO13O94829 963 aaKnown RBP12.75□□□□□ -0.37
CLK3-216ENST00000564468 S100BP04271 92 aaPredicted RBP12.75□□□□□ -0.37
CLK3-216ENST00000564468 SLC35G6P0C7Q6 338 aa12.75□□□□□ -0.37
CLK3-216ENST00000564468 CD1DP15813 335 aa12.75□□□□□ -0.37
CLK3-216ENST00000564468 DSG2Q14126 1118 aa12.75□□□□□ -0.37
CLK3-216ENST00000564468 HKDC1Q2TB90 917 aa12.75□□□□□ -0.37
CLK3-216ENST00000564468 LACTB2Q53H82 288 aaPredicted RBP12.75□□□□□ -0.37
CLK3-216ENST00000564468 SULT1C3Q6IMI6 304 aa12.75□□□□□ -0.37
CLK3-216ENST00000564468 TAOK1Q7L7X3 1001 aa12.75□□□□□ -0.37
CLK3-216ENST00000564468 ASPGQ86U10 573 aa12.75□□□□□ -0.37
CLK3-216ENST00000564468 PLD3Q8IV08 490 aa12.75□□□□□ -0.37
CLK3-216ENST00000564468 MFSD9Q8NBP5 474 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms