RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 MAGP20916 626 aa12.31□□□□□ -0.44
CLK3-214ENST00000564096 SERPINB3P29508 390 aa12.31□□□□□ -0.44
CLK3-214ENST00000564096 GRIA3P42263 894 aa12.31□□□□□ -0.44
CLK3-214ENST00000564096 PIK3CBP42338 1070 aa12.31□□□□□ -0.44
CLK3-214ENST00000564096 IDH3AP50213 366 aa12.31□□□□□ -0.44
CLK3-214ENST00000564096 HTR6P50406 440 aa12.31□□□□□ -0.44
CLK3-214ENST00000564096 OR1D5P58170 312 aa12.31□□□□□ -0.44
CLK3-214ENST00000564096 CSNK1G2P78368 415 aa12.31□□□□□ -0.44
CLK3-214ENST00000564096 MAD2L1Q13257 205 aaPredicted RBP12.31□□□□□ -0.44
CLK3-214ENST00000564096 RBBP5Q15291 538 aaKnown RBP12.31□□□□□ -0.44
CLK3-214ENST00000564096 AMZ1Q400G9 498 aa12.31□□□□□ -0.44
CLK3-214ENST00000564096 SGO1Q5FBB7 561 aa12.31□□□□□ -0.44
CLK3-214ENST00000564096 TCHHL1Q5QJ38 904 aaPredicted RBP12.31□□□□□ -0.44
CLK3-214ENST00000564096 KIAA1614Q5VZ46 1190 aa12.31□□□□□ -0.44
CLK3-214ENST00000564096 ZNF425Q6IV72 752 aa12.31□□□□□ -0.44
CLK3-214ENST00000564096 GUSBP11Q6P575 273 aa12.31□□□□□ -0.44
CLK3-214ENST00000564096 PRR23CQ6ZRP0 262 aa12.31□□□□□ -0.44
CLK3-214ENST00000564096 MAVSQ7Z434 540 aa12.31□□□□□ -0.44
CLK3-214ENST00000564096 TRIM73Q86UV7 250 aa12.31□□□□□ -0.44
CLK3-214ENST00000564096 PAQR7Q86WK9 346 aa12.31□□□□□ -0.44
CLK3-214ENST00000564096 NAXDQ8IW45 347 aa12.31□□□□□ -0.44
CLK3-214ENST00000564096 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.31□□□□□ -0.44
CLK3-214ENST00000564096 ZNF655Q8N720 491 aaPredicted RBP12.31□□□□□ -0.44
CLK3-214ENST00000564096 Q8N9G6 341 aaPredicted RBP12.31□□□□□ -0.44
CLK3-214ENST00000564096 C19orf47Q8N9M1 422 aaKnown RBP12.31□□□□□ -0.44
CLK3-214ENST00000564096 OR7G3Q8NG95 312 aa12.31□□□□□ -0.44
CLK3-214ENST00000564096 OR4K1Q8NGD4 311 aa12.31□□□□□ -0.44
CLK3-214ENST00000564096 CEP70Q8NHQ1 597 aa12.31□□□□□ -0.44
CLK3-214ENST00000564096 FLVCR1-AS1Q8TAF5 88 aa12.31□□□□□ -0.44
CLK3-214ENST00000564096 IFI44Q8TCB0 444 aa12.31□□□□□ -0.44
CLK3-214ENST00000564096 ZUFSPQ96AP4 578 aa12.31□□□□□ -0.44
CLK3-214ENST00000564096 TUBGCP3Q96CW5 907 aa12.31□□□□□ -0.44
CLK3-214ENST00000564096 THAP11Q96EK4 314 aa12.31□□□□□ -0.44
CLK3-214ENST00000564096 MAELQ96JY0 434 aaKnown RBP12.31□□□□□ -0.44
CLK3-214ENST00000564096 PPP1R36Q96LQ0 422 aa12.31□□□□□ -0.44
CLK3-214ENST00000564096 TGM7Q96PF1 710 aa12.31□□□□□ -0.44
CLK3-214ENST00000564096 CCDC3Q9BQI4 270 aa12.31□□□□□ -0.44
CLK3-214ENST00000564096 SEMA6CQ9H3T2 930 aa12.31□□□□□ -0.44
CLK3-214ENST00000564096 C1GALT1Q9NS00 363 aa12.31□□□□□ -0.44
CLK3-214ENST00000564096 MN1Q10571 1320 aaPredicted RBP12.31□□□□□ -0.44
CLK3-214ENST00000564096 IGKV1-8A0A0C4DH67 115 aa12.3□□□□□ -0.44
CLK3-214ENST00000564096 LY6G6EA0A0G2JKS1 128 aa12.3□□□□□ -0.44
CLK3-214ENST00000564096 SERTM1A2A2V5 107 aa12.3□□□□□ -0.44
CLK3-214ENST00000564096 OR2A25A4D2G3 310 aa12.3□□□□□ -0.44
CLK3-214ENST00000564096 FOXE1O00358 373 aaPredicted RBP12.3□□□□□ -0.44
CLK3-214ENST00000564096 SDHDO14521 159 aa12.3□□□□□ -0.44
CLK3-214ENST00000564096 ZNF195O14628 629 aa12.3□□□□□ -0.44
CLK3-214ENST00000564096 HAT1O14929 419 aa12.3□□□□□ -0.44
CLK3-214ENST00000564096 TNFSF14O43557 240 aa12.3□□□□□ -0.44
CLK3-214ENST00000564096 OR1F1O43749 312 aa12.3□□□□□ -0.44
CLK3-214ENST00000564096 PRAMEF4O60810 478 aa12.3□□□□□ -0.44
CLK3-214ENST00000564096 CCDC22O60826 627 aa12.3□□□□□ -0.44
CLK3-214ENST00000564096 RASSF9O75901 435 aa12.3□□□□□ -0.44
CLK3-214ENST00000564096 PDYNP01213 254 aa12.3□□□□□ -0.44
CLK3-214ENST00000564096 JUNP05412 331 aaKnown RBP12.3□□□□□ -0.44
CLK3-214ENST00000564096 GP1BAP07359 652 aa12.3□□□□□ -0.44
CLK3-214ENST00000564096 LINC00032P0C843 101 aa12.3□□□□□ -0.44
CLK3-214ENST00000564096 CKMT2P17540 419 aa12.3□□□□□ -0.44
CLK3-214ENST00000564096 MAPK1P28482 360 aa12.3□□□□□ -0.44
CLK3-214ENST00000564096 EPHA3P29320 983 aa12.3□□□□□ -0.44
CLK3-214ENST00000564096 AHRP35869 848 aa12.3□□□□□ -0.44
CLK3-214ENST00000564096 MLLT3P42568 568 aaPredicted RBP12.3□□□□□ -0.44
CLK3-214ENST00000564096 SCTRP47872 440 aa12.3□□□□□ -0.44
CLK3-214ENST00000564096 ARL4DP49703 201 aa12.3□□□□□ -0.44
CLK3-214ENST00000564096 IRX1P78414 480 aaPredicted RBP12.3□□□□□ -0.44
CLK3-214ENST00000564096 MEF2AQ02078 507 aaPredicted RBP12.3□□□□□ -0.44
CLK3-214ENST00000564096 RELAQ04206 551 aa12.3□□□□□ -0.44
CLK3-214ENST00000564096 SF3A3Q12874 501 aaKnown RBP eCLIP12.3□□□□□ -0.441e-6■■■■■ 38.4
CLK3-214ENST00000564096 ABRAXAS2Q15018 415 aa12.3□□□□□ -0.44
CLK3-214ENST00000564096 SLC9B1Q4ZJI4 515 aa12.3□□□□□ -0.44
CLK3-214ENST00000564096 VWA5B1Q5TIE3 1220 aa12.3□□□□□ -0.44
CLK3-214ENST00000564096 PRAMEF9Q5VWM5 478 aa12.3□□□□□ -0.44
CLK3-214ENST00000564096 WDR74Q6RFH5 385 aaPredicted RBP12.3□□□□□ -0.44
CLK3-214ENST00000564096 TRIM46Q7Z4K8 759 aa12.3□□□□□ -0.44
CLK3-214ENST00000564096 HUS1BQ8NHY5 278 aa12.3□□□□□ -0.44
CLK3-214ENST00000564096 WDR48Q8TAF3 677 aa12.3□□□□□ -0.44
CLK3-214ENST00000564096 BAHD1Q8TBE0 780 aaPredicted RBP12.3□□□□□ -0.44
CLK3-214ENST00000564096 WDR20Q8TBZ3 569 aa12.3□□□□□ -0.44
CLK3-214ENST00000564096 RHBDD1Q8TEB9 315 aa12.3□□□□□ -0.44
CLK3-214ENST00000564096 NCSTNQ92542 709 aa12.3□□□□□ -0.44
CLK3-214ENST00000564096 RERGQ96A58 199 aaPredicted RBP12.3□□□□□ -0.44
CLK3-214ENST00000564096 SERPINI1Q99574 410 aa12.3□□□□□ -0.44
CLK3-214ENST00000564096 ZFYVE21Q9BQ24 234 aa12.3□□□□□ -0.44
CLK3-214ENST00000564096 EBF4Q9BQW3 602 aa12.3□□□□□ -0.44
CLK3-214ENST00000564096 SARGQ9BW04 601 aa12.3□□□□□ -0.44
CLK3-214ENST00000564096 ABCG4Q9H172 646 aa12.3□□□□□ -0.44
CLK3-214ENST00000564096 TUBB1Q9H4B7 451 aa12.3□□□□□ -0.44
CLK3-214ENST00000564096 SYNDIG1Q9H7V2 258 aa12.3□□□□□ -0.44
CLK3-214ENST00000564096 DMRT3Q9NQL9 472 aa12.3□□□□□ -0.44
CLK3-214ENST00000564096 SOHLH2Q9NX45 425 aa12.3□□□□□ -0.44
CLK3-214ENST00000564096 PPT2Q9UMR5 302 aa12.3□□□□□ -0.44
CLK3-214ENST00000564096 U3KQA8 63 aa12.3□□□□□ -0.44
CLK3-214ENST00000564096 E9PBE3 544 aa12.29□□□□□ -0.44
CLK3-214ENST00000564096 TOX3O15405 576 aaPredicted RBP12.29□□□□□ -0.44
CLK3-214ENST00000564096 KLHL41O60662 606 aa12.29□□□□□ -0.44
CLK3-214ENST00000564096 CLEC3AO75596 197 aa12.29□□□□□ -0.44
CLK3-214ENST00000564096 CPNE6O95741 557 aa12.29□□□□□ -0.44
CLK3-214ENST00000564096 RPLP0P05388 317 aaKnown RBP12.29□□□□□ -0.44
CLK3-214ENST00000564096 SLC35G6P0C7Q6 338 aa12.29□□□□□ -0.44
CLK3-214ENST00000564096 LBPP18428 481 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms