RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 FTOQ9C0B1 505 aaKnown RBP eCLIP4.3□□□□□ -1.72
PRPF39-209ENST00000556353 DEFB129Q9H1M3 183 aa4.3□□□□□ -1.72
PRPF39-209ENST00000556353 ARRDC1-AS1Q9H2J1 176 aa4.3□□□□□ -1.72
PRPF39-209ENST00000556353 SDR39U1Q9NRG7 319 aaPredicted RBP4.3□□□□□ -1.72
PRPF39-209ENST00000556353 TAB2Q9NYJ8 693 aa4.3□□□□□ -1.72
PRPF39-209ENST00000556353 ERAP1Q9NZ08 941 aa4.3□□□□□ -1.72
PRPF39-209ENST00000556353 RHCGQ9UBD6 479 aa4.3□□□□□ -1.72
PRPF39-209ENST00000556353 NRBP1Q9UHY1 535 aa4.3□□□□□ -1.72
PRPF39-209ENST00000556353 MYO9BQ13459 2157 aa4.3□□□□□ -1.72
PRPF39-209ENST00000556353 TRIOO75962 3097 aa4.3□□□□□ -1.72
PRPF39-209ENST00000556353 WDR87Q6ZQQ6 2873 aa4.29□□□□□ -1.72
PRPF39-209ENST00000556353 RLFQ13129 1914 aa4.29□□□□□ -1.72
PRPF39-209ENST00000556353 BAZ2AQ9UIF9 1905 aaKnown RBP4.29□□□□□ -1.72
PRPF39-209ENST00000556353 FAM205AQ6ZU69 1335 aa4.29□□□□□ -1.72
PRPF39-209ENST00000556353 NAV1Q8NEY1 1877 aa4.29□□□□□ -1.72
PRPF39-209ENST00000556353 A0A087X0M5 115 aa4.29□□□□□ -1.72
PRPF39-209ENST00000556353 A0A1B0GX30 115 aa4.29□□□□□ -1.72
PRPF39-209ENST00000556353 ANKRD18BA2A2Z9 1011 aa4.29□□□□□ -1.72
PRPF39-209ENST00000556353 LRRC72A6NJI9 287 aa4.29□□□□□ -1.72
PRPF39-209ENST00000556353 MITFO75030 526 aaPredicted RBP4.29□□□□□ -1.72
PRPF39-209ENST00000556353 NXPH2O95156 264 aa4.29□□□□□ -1.72
PRPF39-209ENST00000556353 MBD4O95243 580 aa4.29□□□□□ -1.72
PRPF39-209ENST00000556353 CD4P01730 458 aa4.29□□□□□ -1.72
PRPF39-209ENST00000556353 ACADMP11310 421 aa4.29□□□□□ -1.72
PRPF39-209ENST00000556353 MMP9P14780 707 aa4.29□□□□□ -1.72
PRPF39-209ENST00000556353 PDX1P52945 283 aa4.29□□□□□ -1.72
PRPF39-209ENST00000556353 DMPKQ09013 629 aa4.29□□□□□ -1.72
PRPF39-209ENST00000556353 RABL6Q3YEC7 729 aaPredicted RBP4.29□□□□□ -1.72
PRPF39-209ENST00000556353 TAF3Q5VWG9 929 aa4.29□□□□□ -1.72
PRPF39-209ENST00000556353 LRRTM1Q86UE6 522 aa4.29□□□□□ -1.72
PRPF39-209ENST00000556353 APOBEC3FQ8IUX4 373 aaKnown RBP4.29□□□□□ -1.72
PRPF39-209ENST00000556353 FAM114A1Q8IWE2 563 aa4.29□□□□□ -1.72
PRPF39-209ENST00000556353 ADGRF2Q8IZF7 708 aa4.29□□□□□ -1.72
PRPF39-209ENST00000556353 DCLK2Q8N568 766 aa4.29□□□□□ -1.72
PRPF39-209ENST00000556353 NIPA2Q8N8Q9 360 aa4.29□□□□□ -1.72
PRPF39-209ENST00000556353 OR5AP2Q8NGF4 316 aa4.29□□□□□ -1.72
PRPF39-209ENST00000556353 RTN4RQ9BZR6 473 aa4.29□□□□□ -1.72
PRPF39-209ENST00000556353 ANKRD2Q9GZV1 360 aa4.29□□□□□ -1.72
PRPF39-209ENST00000556353 RSPH9Q9H1X1 276 aaPredicted RBP4.29□□□□□ -1.72
PRPF39-209ENST00000556353 HRH4Q9H3N8 390 aa4.29□□□□□ -1.72
PRPF39-209ENST00000556353 RAI14Q9P0K7 980 aa4.29□□□□□ -1.72
PRPF39-209ENST00000556353 WDR37Q9Y2I8 494 aa4.29□□□□□ -1.72
PRPF39-209ENST00000556353 ZHX2Q9Y6X8 837 aa4.29□□□□□ -1.72
PRPF39-209ENST00000556353 MSGN1A6NI15 193 aa4.28□□□□□ -1.72
PRPF39-209ENST00000556353 SHC1P29353 583 aa4.28□□□□□ -1.72
PRPF39-209ENST00000556353 SLC6A6P31641 620 aa4.28□□□□□ -1.72
PRPF39-209ENST00000556353 GSDMDP57764 484 aa4.28□□□□□ -1.72
PRPF39-209ENST00000556353 FKBP1AP62942 108 aaKnown RBP4.28□□□□□ -1.72
PRPF39-209ENST00000556353 HLA-BQ31612 363 aa4.28□□□□□ -1.72
PRPF39-209ENST00000556353 FIP1L1Q6UN15 594 aaKnown RBP4.28□□□□□ -1.72
PRPF39-209ENST00000556353 IL27RAQ6UWB1 636 aa4.28□□□□□ -1.72
PRPF39-209ENST00000556353 CREBRFQ8IUR6 639 aa4.28□□□□□ -1.72
PRPF39-209ENST00000556353 LACC1Q8IV20 430 aa4.28□□□□□ -1.72
PRPF39-209ENST00000556353 CCDC34Q96HJ3 373 aa4.28□□□□□ -1.72
PRPF39-209ENST00000556353 ZNF830Q96NB3 372 aaPredicted RBP4.28□□□□□ -1.72
PRPF39-209ENST00000556353 KRT12Q99456 494 aa4.28□□□□□ -1.72
PRPF39-209ENST00000556353 NAP1L4Q99733 375 aaKnown RBP4.28□□□□□ -1.72
PRPF39-209ENST00000556353 PIGQQ9BRB3 760 aa4.28□□□□□ -1.72
PRPF39-209ENST00000556353 CCDC177Q9NQR7 707 aaPredicted RBP4.28□□□□□ -1.72
PRPF39-209ENST00000556353 LARSQ9P2J5 1176 aaKnown RBP4.28□□□□□ -1.72
PRPF39-209ENST00000556353 MOB4Q9Y3A3 225 aa4.28□□□□□ -1.72
PRPF39-209ENST00000556353 ZNFX1Q9P2E3 1918 aaKnown RBP4.28□□□□□ -1.72
PRPF39-209ENST00000556353 COL11A1P12107 1806 aaPredicted RBP4.28□□□□□ -1.72
PRPF39-209ENST00000556353 RPAP1Q9BWH6 1393 aaPredicted RBP4.27□□□□□ -1.73
PRPF39-209ENST00000556353 MCM3APO60318 1980 aa4.27□□□□□ -1.73
PRPF39-209ENST00000556353 CCDC189A1A4V9 331 aa4.27□□□□□ -1.73
PRPF39-209ENST00000556353 HYKKA2RU49 373 aa4.27□□□□□ -1.73
PRPF39-209ENST00000556353 KPNA7A9QM74 516 aa4.27□□□□□ -1.73
PRPF39-209ENST00000556353 CLDN1O95832 211 aa4.27□□□□□ -1.73
PRPF39-209ENST00000556353 ACADSP16219 412 aa4.27□□□□□ -1.73
PRPF39-209ENST00000556353 UGT1A4P22310 534 aa4.27□□□□□ -1.73
PRPF39-209ENST00000556353 TLX1P31314 330 aaPredicted RBP4.27□□□□□ -1.73
PRPF39-209ENST00000556353 SUOXP51687 545 aa4.27□□□□□ -1.73
PRPF39-209ENST00000556353 HERV-K104P61576 105 aa4.27□□□□□ -1.73
PRPF39-209ENST00000556353 DRP2Q13474 957 aa4.27□□□□□ -1.73
PRPF39-209ENST00000556353 VGLL4Q14135 290 aa4.27□□□□□ -1.73
PRPF39-209ENST00000556353 CDC37Q16543 378 aaPredicted RBP4.27□□□□□ -1.73
PRPF39-209ENST00000556353 WLSQ5T9L3 541 aa4.27□□□□□ -1.73
PRPF39-209ENST00000556353 APOBEC3HQ6NTF7 200 aaKnown RBP4.27□□□□□ -1.73
PRPF39-209ENST00000556353 RPAINQ86UA6 219 aa4.27□□□□□ -1.73
PRPF39-209ENST00000556353 TRIML1Q8N9V2 468 aa4.27□□□□□ -1.73
PRPF39-209ENST00000556353 C1orf131Q8NDD1 294 aaKnown RBP4.27□□□□□ -1.73
PRPF39-209ENST00000556353 PAPD5Q8NDF8 572 aaKnown RBP4.27□□□□□ -1.73
PRPF39-209ENST00000556353 MOSPD2Q8NHP6 518 aa4.27□□□□□ -1.73
PRPF39-209ENST00000556353 NSMCE3Q96MG7 304 aa4.27□□□□□ -1.73
PRPF39-209ENST00000556353 TDRD3Q9H7E2 651 aaKnown RBP4.27□□□□□ -1.73
PRPF39-209ENST00000556353 ATP13A3Q9H7F0 1226 aa4.27□□□□□ -1.73
PRPF39-209ENST00000556353 YY1AP1Q9H869 796 aa4.27□□□□□ -1.73
PRPF39-209ENST00000556353 EIF2B3Q9NR50 452 aaKnown RBP4.27□□□□□ -1.73
PRPF39-209ENST00000556353 SEPT11Q9NVA2 429 aaKnown RBP4.27□□□□□ -1.73
PRPF39-209ENST00000556353 EPHA6Q9UF33 1036 aa4.27□□□□□ -1.73
PRPF39-209ENST00000556353 KLK13Q9UKR3 277 aa4.27□□□□□ -1.73
PRPF39-209ENST00000556353 TNNQ9UQP3 1299 aa4.27□□□□□ -1.73
PRPF39-209ENST00000556353 A0A0G2JMZ2 1700 aa4.26□□□□□ -1.73
PRPF39-209ENST00000556353 PLXNA1Q9UIW2 1896 aa4.26□□□□□ -1.73
PRPF39-209ENST00000556353 IGKV6D-41A0A0C4DH26 115 aa4.26□□□□□ -1.73
PRPF39-209ENST00000556353 PI15O43692 258 aa4.26□□□□□ -1.73
PRPF39-209ENST00000556353 USO1O60763 962 aaKnown RBP4.26□□□□□ -1.73
PRPF39-209ENST00000556353 RNASEH1O60930 286 aaKnown RBP4.26□□□□□ -1.73
PRPF39-209ENST00000556353 VPREB1P12018 145 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms