RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-217ENST00000546164 CDKL4Q5MAI5 379 aa11.32□□□□□ -0.6
YBX3-217ENST00000546164 MLIPQ5VWP3 458 aa11.32□□□□□ -0.6
YBX3-217ENST00000546164 COX15Q7KZN9 410 aa11.32□□□□□ -0.6
YBX3-217ENST00000546164 VN1R4Q7Z5H5 301 aa11.32□□□□□ -0.6
YBX3-217ENST00000546164 CCDC91Q7Z6B0 441 aa11.32□□□□□ -0.6
YBX3-217ENST00000546164 RAB43Q86YS6 212 aa11.32□□□□□ -0.6
YBX3-217ENST00000546164 PLD3Q8IV08 490 aa11.32□□□□□ -0.6
YBX3-217ENST00000546164 KLHDC8AQ8IYD2 350 aa11.32□□□□□ -0.6
YBX3-217ENST00000546164 OR4K1Q8NGD4 311 aa11.32□□□□□ -0.6
YBX3-217ENST00000546164 IFT81Q8WYA0 676 aa11.32□□□□□ -0.6
YBX3-217ENST00000546164 RERGQ96A58 199 aaPredicted RBP11.32□□□□□ -0.6
YBX3-217ENST00000546164 PTERQ96BW5 349 aa11.32□□□□□ -0.6
YBX3-217ENST00000546164 PYCR2Q96C36 320 aa11.32□□□□□ -0.6
YBX3-217ENST00000546164 IP6K3Q96PC2 410 aa11.32□□□□□ -0.6
YBX3-217ENST00000546164 OR4K3Q96R72 315 aa11.32□□□□□ -0.6
YBX3-217ENST00000546164 SLC25A18Q9H1K4 315 aa11.32□□□□□ -0.6
YBX3-217ENST00000546164 CDC42EP4Q9H3Q1 356 aaKnown RBP11.32□□□□□ -0.6
YBX3-217ENST00000546164 ABCF3Q9NUQ8 709 aa11.32□□□□□ -0.6
YBX3-217ENST00000546164 NXT1Q9UKK6 140 aaKnown RBP11.32□□□□□ -0.6
YBX3-217ENST00000546164 CDC14AQ9UNH5 594 aa11.32□□□□□ -0.6
YBX3-217ENST00000546164 SH2B3Q9UQQ2 575 aa11.32□□□□□ -0.6
YBX3-217ENST00000546164 RUVBL1Q9Y265 456 aaKnown RBP11.32□□□□□ -0.6
YBX3-217ENST00000546164 ANKRD12Q6UB98 2062 aa11.31□□□□□ -0.6
YBX3-217ENST00000546164 IGLV3-12A0A075B6K2 115 aa11.31□□□□□ -0.6
YBX3-217ENST00000546164 VSTM2BA6NLU5 285 aa11.31□□□□□ -0.6
YBX3-217ENST00000546164 P2RX6O15547 441 aa11.31□□□□□ -0.6
YBX3-217ENST00000546164 RFPL1O75677 317 aa11.31□□□□□ -0.6
YBX3-217ENST00000546164 FAM155BO75949 473 aa11.31□□□□□ -0.6
YBX3-217ENST00000546164 SLC35E2BP0CK96 405 aa11.31□□□□□ -0.6
YBX3-217ENST00000546164 CCDC166P0CW27 439 aa11.31□□□□□ -0.6
YBX3-217ENST00000546164 FOLR3P41439 243 aa11.31□□□□□ -0.6
YBX3-217ENST00000546164 CCR8P51685 355 aa11.31□□□□□ -0.6
YBX3-217ENST00000546164 FAM53BQ14153 422 aa11.31□□□□□ -0.6
YBX3-217ENST00000546164 SLC9A5Q14940 896 aa11.31□□□□□ -0.6
YBX3-217ENST00000546164 TGFBIQ15582 683 aa11.31□□□□□ -0.6
YBX3-217ENST00000546164 NKG7Q16617 165 aa11.31□□□□□ -0.6
YBX3-217ENST00000546164 HKDC1Q2TB90 917 aa11.31□□□□□ -0.6
YBX3-217ENST00000546164 FAM69BQ5VUD6 431 aa11.31□□□□□ -0.6
YBX3-217ENST00000546164 FRA10AC1Q70Z53 315 aa11.31□□□□□ -0.6
YBX3-217ENST00000546164 MRGPREQ86SM8 312 aa11.31□□□□□ -0.6
YBX3-217ENST00000546164 IFT20Q8IY31 132 aa11.31□□□□□ -0.6
YBX3-217ENST00000546164 SLC5A11Q8WWX8 675 aa11.31□□□□□ -0.6
YBX3-217ENST00000546164 ALKBH8Q96BT7 664 aaKnown RBP11.31□□□□□ -0.6
YBX3-217ENST00000546164 RHBDF1Q96CC6 855 aa11.31□□□□□ -0.6
YBX3-217ENST00000546164 TM4SF19Q96DZ7 209 aa11.31□□□□□ -0.6
YBX3-217ENST00000546164 CABS1Q96KC9 395 aa11.31□□□□□ -0.6
YBX3-217ENST00000546164 SPSB2Q99619 263 aa11.31□□□□□ -0.6
YBX3-217ENST00000546164 L2HGDHQ9H9P8 463 aa11.31□□□□□ -0.6
YBX3-217ENST00000546164 PTRH2Q9Y3E5 179 aaKnown RBP11.31□□□□□ -0.6
YBX3-217ENST00000546164 CCDC189A1A4V9 331 aa11.3□□□□□ -0.6
YBX3-217ENST00000546164 HMX2A2RU54 273 aa11.3□□□□□ -0.6
YBX3-217ENST00000546164 PRPF4O43172 522 aaKnown RBP eCLIP11.3□□□□□ -0.6
YBX3-217ENST00000546164 FOXS1O43638 330 aa11.3□□□□□ -0.6
YBX3-217ENST00000546164 UMODP07911 640 aa11.3□□□□□ -0.6
YBX3-217ENST00000546164 CDH1P12830 882 aa11.3□□□□□ -0.6
YBX3-217ENST00000546164 GRK3P35626 688 aa11.3□□□□□ -0.6
YBX3-217ENST00000546164 GGT5P36269 586 aa11.3□□□□□ -0.6
YBX3-217ENST00000546164 BCL6P41182 706 aa11.3□□□□□ -0.6
YBX3-217ENST00000546164 OR1D4P47884 311 aa11.3□□□□□ -0.6
YBX3-217ENST00000546164 SLC6A12P48065 614 aa11.3□□□□□ -0.6
YBX3-217ENST00000546164 COL9A2Q14055 689 aaPredicted RBP11.3□□□□□ -0.6
YBX3-217ENST00000546164 DSG2Q14126 1118 aa11.3□□□□□ -0.6
YBX3-217ENST00000546164 SLMAPQ14BN4 828 aa11.3□□□□□ -0.6
YBX3-217ENST00000546164 UBAP2Q5T6F2 1119 aaKnown RBP11.3□□□□□ -0.6
YBX3-217ENST00000546164 CMC1Q7Z7K0 106 aa11.3□□□□□ -0.6
YBX3-217ENST00000546164 THOC6Q86W42 341 aaKnown RBP11.3□□□□□ -0.6
YBX3-217ENST00000546164 GPSM1Q86YR5 675 aa11.3□□□□□ -0.6
YBX3-217ENST00000546164 TCAIMQ8N3R3 496 aa11.3□□□□□ -0.6
YBX3-217ENST00000546164 SPATA6LQ8N4H0 392 aa11.3□□□□□ -0.6
YBX3-217ENST00000546164 DTWD1Q8N5C7 304 aa11.3□□□□□ -0.6
YBX3-217ENST00000546164 TMEM102Q8N9M5 508 aaPredicted RBP11.3□□□□□ -0.6
YBX3-217ENST00000546164 MFSD9Q8NBP5 474 aa11.3□□□□□ -0.6
YBX3-217ENST00000546164 CAMKVQ8NCB2 501 aa11.3□□□□□ -0.6
YBX3-217ENST00000546164 C9orf43Q8TAL5 461 aaPredicted RBP11.3□□□□□ -0.6
YBX3-217ENST00000546164 ZDHHC19Q8WVZ1 309 aaPredicted RBP11.3□□□□□ -0.6
YBX3-217ENST00000546164 NEIL2Q969S2 332 aa11.3□□□□□ -0.6
YBX3-217ENST00000546164 KIAA1191Q96A73 305 aa11.3□□□□□ -0.6
YBX3-217ENST00000546164 ABHD17AQ96GS6 310 aa11.3□□□□□ -0.6
YBX3-217ENST00000546164 EGFL8Q99944 293 aa11.3□□□□□ -0.6
YBX3-217ENST00000546164 DRC3Q9H069 523 aa11.3□□□□□ -0.6
YBX3-217ENST00000546164 PELI2Q9HAT8 420 aa11.3□□□□□ -0.6
YBX3-217ENST00000546164 ZNF304Q9HCX3 659 aa11.3□□□□□ -0.6
YBX3-217ENST00000546164 CTSFQ9UBX1 484 aa11.3□□□□□ -0.6
YBX3-217ENST00000546164 KCNE2Q9Y6J6 123 aa11.3□□□□□ -0.6
YBX3-217ENST00000546164 MDC1Q14676 2089 aaKnown RBP11.29□□□□□ -0.6
YBX3-217ENST00000546164 TRBC2A0A5B9 178 aa11.29□□□□□ -0.6
YBX3-217ENST00000546164 ARGFXA6NJG6 315 aa11.29□□□□□ -0.6
YBX3-217ENST00000546164 B8ZZF3 427 aa11.29□□□□□ -0.6
YBX3-217ENST00000546164 MKRN2OSH3BPM6 223 aa11.29□□□□□ -0.6
YBX3-217ENST00000546164 LCMT2O60294 686 aaKnown RBP11.29□□□□□ -0.6
YBX3-217ENST00000546164 CEACAM4O75871 244 aa11.29□□□□□ -0.6
YBX3-217ENST00000546164 IPO13O94829 963 aaKnown RBP11.29□□□□□ -0.6
YBX3-217ENST00000546164 ACSL3O95573 720 aa11.29□□□□□ -0.6
YBX3-217ENST00000546164 IGHEP01854 428 aa11.29□□□□□ -0.6
YBX3-217ENST00000546164 MMP11P24347 488 aa11.29□□□□□ -0.6
YBX3-217ENST00000546164 RRADP55042 308 aa11.29□□□□□ -0.6
YBX3-217ENST00000546164 CSHL1Q14406 222 aa11.29□□□□□ -0.6
YBX3-217ENST00000546164 OR4D1Q15615 310 aa11.29□□□□□ -0.6
YBX3-217ENST00000546164 NDUFA9Q16795 377 aa11.29□□□□□ -0.6
YBX3-217ENST00000546164 CATSPEREQ5SY80 951 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms