RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 KRT80Q6KB66 452 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 SUSD6Q92537 303 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 TMBIM1Q969X1 311 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 SLC47A1Q96FL8 570 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 PHF12Q96QT6 1004 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 CDCA3Q99618 268 aaPredicted RBP13.3□□□□□ -0.28
RTN3-210ENST00000540798 TBCDQ9BTW9 1192 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 ITM2CQ9NQX7 267 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 DYRK4Q9NR20 520 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 DNAJB9Q9UBS3 223 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 LIMD1Q9UGP4 676 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 TSC22D4Q9Y3Q8 395 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 ANTXRLA6NF34 631 aa13.29□□□□□ -0.28
RTN3-210ENST00000540798 MGAT4DA6NG13 374 aa13.29□□□□□ -0.28
RTN3-210ENST00000540798 H0YAE9 185 aa13.29□□□□□ -0.28
RTN3-210ENST00000540798 VILLO15195 856 aa13.29□□□□□ -0.28
RTN3-210ENST00000540798 YY2O15391 372 aa13.29□□□□□ -0.28
RTN3-210ENST00000540798 POP7O75817 140 aaKnown RBP13.29□□□□□ -0.28
RTN3-210ENST00000540798 OR6B1O95007 311 aa13.29□□□□□ -0.28
RTN3-210ENST00000540798 GSNP06396 782 aa13.29□□□□□ -0.28
RTN3-210ENST00000540798 ZNF23P17027 643 aa13.29□□□□□ -0.28
RTN3-210ENST00000540798 ALDH3B2P48448 385 aa13.29□□□□□ -0.28
RTN3-210ENST00000540798 ALDH3A2P51648 485 aa13.29□□□□□ -0.28
RTN3-210ENST00000540798 TAP2Q03519 686 aa13.29□□□□□ -0.28
RTN3-210ENST00000540798 ACSM2AQ08AH3 577 aa13.29□□□□□ -0.28
RTN3-210ENST00000540798 CNTN1Q12860 1018 aa13.29□□□□□ -0.28
RTN3-210ENST00000540798 ACSM2BQ68CK6 577 aa13.29□□□□□ -0.28
RTN3-210ENST00000540798 MED27Q6P2C8 311 aa13.29□□□□□ -0.28
RTN3-210ENST00000540798 FAM83HQ6ZRV2 1179 aaPredicted RBP13.29□□□□□ -0.28
RTN3-210ENST00000540798 PLA2G15Q8NCC3 412 aa13.29□□□□□ -0.28
RTN3-210ENST00000540798 NETO1Q8TDF5 533 aa13.29□□□□□ -0.28
RTN3-210ENST00000540798 CXorf40AQ8TE69 158 aa13.29□□□□□ -0.28
RTN3-210ENST00000540798 GFM2Q969S9 779 aaKnown RBP13.29□□□□□ -0.28
RTN3-210ENST00000540798 REPS1Q96D71 796 aa13.29□□□□□ -0.28
RTN3-210ENST00000540798 DGCR14Q96DF8 476 aaKnown RBP13.29□□□□□ -0.28
RTN3-210ENST00000540798 CLK4Q9HAZ1 481 aaKnown RBP13.29□□□□□ -0.28
RTN3-210ENST00000540798 MAPRE3Q9UPY8 281 aa13.29□□□□□ -0.28
RTN3-210ENST00000540798 CDH23Q9H251 3354 aa13.29□□□□□ -0.28
RTN3-210ENST00000540798 ALPLP05186 524 aa13.29□□□□□ -0.28
RTN3-210ENST00000540798 GPX2P18283 190 aa13.29□□□□□ -0.28
RTN3-210ENST00000540798 DRD3P35462 400 aa13.29□□□□□ -0.28
RTN3-210ENST00000540798 MTHFRP42898 656 aa13.29□□□□□ -0.28
RTN3-210ENST00000540798 ASMTP46597 345 aa13.29□□□□□ -0.28
RTN3-210ENST00000540798 ARSFP54793 590 aa13.29□□□□□ -0.28
RTN3-210ENST00000540798 RPA4Q13156 261 aa13.29□□□□□ -0.28
RTN3-210ENST00000540798 AGERQ15109 404 aa13.29□□□□□ -0.28
RTN3-210ENST00000540798 FBXO30Q8TB52 745 aa13.29□□□□□ -0.28
RTN3-210ENST00000540798 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.29□□□□□ -0.28
RTN3-210ENST00000540798 FAM162AQ96A26 154 aa13.29□□□□□ -0.28
RTN3-210ENST00000540798 COQ8BQ96D53 544 aa13.29□□□□□ -0.28
RTN3-210ENST00000540798 HAUS8Q9BT25 410 aa13.29□□□□□ -0.28
RTN3-210ENST00000540798 EFCAB11Q9BUY7 163 aa13.29□□□□□ -0.28
RTN3-210ENST00000540798 BTNL2Q9UIR0 455 aa13.29□□□□□ -0.28
RTN3-210ENST00000540798 TBC1D3BA6NDS4 549 aa13.28□□□□□ -0.28
RTN3-210ENST00000540798 PRKD3O94806 890 aa13.28□□□□□ -0.28
RTN3-210ENST00000540798 C1GALT1C1LP0DN25 315 aa13.28□□□□□ -0.28
RTN3-210ENST00000540798 ERGP11308 486 aa13.28□□□□□ -0.28
RTN3-210ENST00000540798 GSTT1P30711 240 aa13.28□□□□□ -0.28
RTN3-210ENST00000540798 MAGEA2P43356 314 aa13.28□□□□□ -0.28
RTN3-210ENST00000540798 DAG1Q14118 895 aa13.28□□□□□ -0.28
RTN3-210ENST00000540798 CATSPEREQ5SY80 951 aa13.28□□□□□ -0.28
RTN3-210ENST00000540798 OXR1Q8N573 874 aa13.28□□□□□ -0.28
RTN3-210ENST00000540798 DHRSXQ8N5I4 330 aa13.28□□□□□ -0.28
RTN3-210ENST00000540798 C1orf52Q8N6N3 182 aaKnown RBP13.28□□□□□ -0.28
RTN3-210ENST00000540798 ST13P5Q8NFI4 369 aaPredicted RBP13.28□□□□□ -0.28
RTN3-210ENST00000540798 MAGEE2Q8TD90 523 aaPredicted RBP13.28□□□□□ -0.28
RTN3-210ENST00000540798 ADAMTS16Q8TE57 1224 aa13.28□□□□□ -0.28
RTN3-210ENST00000540798 PLA2G2FQ9BZM2 168 aa13.28□□□□□ -0.28
RTN3-210ENST00000540798 GRIP2Q9C0E4 1043 aa13.28□□□□□ -0.28
RTN3-210ENST00000540798 TUBA8Q9NY65 449 aaPredicted RBP13.28□□□□□ -0.28
RTN3-210ENST00000540798 UTS2RQ9UKP6 389 aa13.28□□□□□ -0.28
RTN3-210ENST00000540798 CDH7Q9ULB5 785 aa13.28□□□□□ -0.28
RTN3-210ENST00000540798 BTBD3Q9Y2F9 522 aa13.28□□□□□ -0.28
RTN3-210ENST00000540798 FPGTO14772 594 aa13.28□□□□□ -0.28
RTN3-210ENST00000540798 MYO1DO94832 1006 aa13.28□□□□□ -0.28
RTN3-210ENST00000540798 COX7A2P14406 83 aa13.28□□□□□ -0.28
RTN3-210ENST00000540798 ATP6V1B1P15313 513 aa13.28□□□□□ -0.28
RTN3-210ENST00000540798 TAS2R38P59533 333 aa13.28□□□□□ -0.28
RTN3-210ENST00000540798 NFE2L1Q14494 772 aa13.28□□□□□ -0.28
RTN3-210ENST00000540798 EGFLAMQ63HQ2 1017 aa13.28□□□□□ -0.28
RTN3-210ENST00000540798 TMEM214Q6NUQ4 689 aaKnown RBP13.28□□□□□ -0.28
RTN3-210ENST00000540798 PNCKQ6P2M8 343 aa13.28□□□□□ -0.28
RTN3-210ENST00000540798 DOK6Q6PKX4 331 aa13.28□□□□□ -0.28
RTN3-210ENST00000540798 TMEM184AQ6ZMB5 413 aa13.28□□□□□ -0.28
RTN3-210ENST00000540798 TMPRSS11BQ86T26 416 aa13.28□□□□□ -0.28
RTN3-210ENST00000540798 PATL1Q86TB9 770 aaKnown RBP13.28□□□□□ -0.28
RTN3-210ENST00000540798 PDZD3Q86UT5 571 aa13.28□□□□□ -0.28
RTN3-210ENST00000540798 SETD7Q8WTS6 366 aaKnown RBP13.28□□□□□ -0.28
RTN3-210ENST00000540798 ZFAND2BQ8WV99 257 aa13.28□□□□□ -0.28
RTN3-210ENST00000540798 RDH12Q96NR8 316 aa13.28□□□□□ -0.28
RTN3-210ENST00000540798 USE1Q9NZ43 259 aa13.28□□□□□ -0.28
RTN3-210ENST00000540798 COMMD3-BMI1R4GMX3 469 aa13.28□□□□□ -0.28
RTN3-210ENST00000540798 KAT7O95251 611 aa13.28□□□□□ -0.28
RTN3-210ENST00000540798 BMP10O95393 424 aa13.28□□□□□ -0.28
RTN3-210ENST00000540798 SNAP29O95721 258 aa13.28□□□□□ -0.28
RTN3-210ENST00000540798 C1QCP02747 245 aa13.28□□□□□ -0.28
RTN3-210ENST00000540798 EPHX1P07099 455 aa13.28□□□□□ -0.28
RTN3-210ENST00000540798 LAMP1P11279 417 aa13.28□□□□□ -0.28
RTN3-210ENST00000540798 TIA1P31483 386 aaKnown RBP eCLIP13.28□□□□□ -0.28
RTN3-210ENST00000540798 RPS13P62277 151 aaKnown RBP13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 159 ms