RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 SLC25A52Q3SY17 297 aa6.41□□□□□ -1.38
USP28-202ENST00000535607 ZNF404Q494X3 552 aa6.41□□□□□ -1.38
USP28-202ENST00000535607 SPANXN2Q5MJ10 180 aa6.41□□□□□ -1.38
USP28-202ENST00000535607 PRAMEF19Q5SWL8 479 aa6.41□□□□□ -1.38
USP28-202ENST00000535607 RBM20Q5T481 1227 aaKnown RBP6.41□□□□□ -1.38
USP28-202ENST00000535607 CCNJQ5T5M9 372 aa6.41□□□□□ -1.38
USP28-202ENST00000535607 ARHGAP17Q68EM7 881 aa6.41□□□□□ -1.38
USP28-202ENST00000535607 BEND5Q7L4P6 421 aa6.41□□□□□ -1.38
USP28-202ENST00000535607 PAGE2Q7Z2X7 111 aa6.41□□□□□ -1.38
USP28-202ENST00000535607 GALNT7Q86SF2 657 aa6.41□□□□□ -1.38
USP28-202ENST00000535607 CHCHD4Q8N4Q1 142 aa6.41□□□□□ -1.38
USP28-202ENST00000535607 PAF1Q8N7H5 531 aa6.41□□□□□ -1.38
USP28-202ENST00000535607 SPERTQ8NA61 448 aa6.41□□□□□ -1.38
USP28-202ENST00000535607 OR7D4Q8NG98 312 aa6.41□□□□□ -1.38
USP28-202ENST00000535607 ITFG1Q8TB96 612 aa6.41□□□□□ -1.38
USP28-202ENST00000535607 BLOC1S5Q8TDH9 187 aa6.41□□□□□ -1.38
USP28-202ENST00000535607 RNF139Q8WU17 664 aa6.41□□□□□ -1.38
USP28-202ENST00000535607 BIRC7Q96CA5 298 aa6.41□□□□□ -1.38
USP28-202ENST00000535607 MVB12AQ96EY5 273 aa6.41□□□□□ -1.38
USP28-202ENST00000535607 HSFY1Q96LI6 401 aa6.41□□□□□ -1.38
USP28-202ENST00000535607 ZNF560Q96MR9 790 aa6.41□□□□□ -1.38
USP28-202ENST00000535607 AGAP2Q99490 1192 aa6.41□□□□□ -1.38
USP28-202ENST00000535607 TCF25Q9BQ70 676 aa6.41□□□□□ -1.38
USP28-202ENST00000535607 CCDC32Q9BV29 185 aa6.41□□□□□ -1.38
USP28-202ENST00000535607 NUSAP1Q9BXS6 441 aaKnown RBP6.41□□□□□ -1.38
USP28-202ENST00000535607 NFKBIZQ9BYH8 718 aa6.41□□□□□ -1.38
USP28-202ENST00000535607 ELOVL4Q9GZR5 314 aa6.41□□□□□ -1.38
USP28-202ENST00000535607 XRN2Q9H0D6 950 aaKnown RBP eCLIP6.41□□□□□ -1.38
USP28-202ENST00000535607 FAM49AQ9H0Q0 323 aaPredicted RBP6.41□□□□□ -1.38
USP28-202ENST00000535607 DSN1Q9H410 356 aa6.41□□□□□ -1.38
USP28-202ENST00000535607 SEC61A2Q9H9S3 476 aa6.41□□□□□ -1.38
USP28-202ENST00000535607 IL23AQ9NPF7 189 aa6.41□□□□□ -1.38
USP28-202ENST00000535607 ABCB10Q9NRK6 738 aa6.41□□□□□ -1.38
USP28-202ENST00000535607 SACM1LQ9NTJ5 587 aa6.41□□□□□ -1.38
USP28-202ENST00000535607 FAM49BQ9NUQ9 324 aa6.41□□□□□ -1.38
USP28-202ENST00000535607 PRMT7Q9NVM4 692 aaPredicted RBP6.41□□□□□ -1.38
USP28-202ENST00000535607 FAM118AQ9NWS6 357 aa6.41□□□□□ -1.38
USP28-202ENST00000535607 TBC1D14Q9P2M4 693 aa6.41□□□□□ -1.38
USP28-202ENST00000535607 SLC17A6Q9P2U8 582 aa6.41□□□□□ -1.38
USP28-202ENST00000535607 POU2F3Q9UKI9 436 aa6.41□□□□□ -1.38
USP28-202ENST00000535607 FZD10Q9ULW2 581 aa6.41□□□□□ -1.38
USP28-202ENST00000535607 TNFSF13BQ9Y275 285 aa6.41□□□□□ -1.38
USP28-202ENST00000535607 RBMX2Q9Y388 322 aaKnown RBP6.41□□□□□ -1.38
USP28-202ENST00000535607 FIS1Q9Y3D6 152 aa6.41□□□□□ -1.38
USP28-202ENST00000535607 DGKBQ9Y6T7 804 aa6.41□□□□□ -1.38
USP28-202ENST00000535607 BRCA2P51587 3418 aa6.41□□□□□ -1.38
USP28-202ENST00000535607 FAM234BA2RU67 622 aa6.4□□□□□ -1.38
USP28-202ENST00000535607 MBLAC1A4D2B0 266 aaPredicted RBP6.4□□□□□ -1.38
USP28-202ENST00000535607 NPEPPSL1A6NEC2 478 aa6.4□□□□□ -1.38
USP28-202ENST00000535607 AGAP5A6NIR3 686 aa6.4□□□□□ -1.38
USP28-202ENST00000535607 EFCAB9A8MZ26 197 aa6.4□□□□□ -1.38
USP28-202ENST00000535607 SLC1A7O00341 560 aa6.4□□□□□ -1.38
USP28-202ENST00000535607 HAT1O14929 419 aa6.4□□□□□ -1.38
USP28-202ENST00000535607 AZIN1O14977 448 aa6.4□□□□□ -1.38
USP28-202ENST00000535607 STX7O15400 261 aaKnown RBP6.4□□□□□ -1.38
USP28-202ENST00000535607 ZW10O43264 779 aa6.4□□□□□ -1.38
USP28-202ENST00000535607 RGS10O43665 173 aa6.4□□□□□ -1.38
USP28-202ENST00000535607 B4GALT3O60512 393 aa6.4□□□□□ -1.38
USP28-202ENST00000535607 SLC22A3O75751 556 aa6.4□□□□□ -1.38
USP28-202ENST00000535607 GRAP2O75791 330 aa6.4□□□□□ -1.38
USP28-202ENST00000535607 RECQL5O94762 991 aaPredicted RBP6.4□□□□□ -1.38
USP28-202ENST00000535607 PRSS23O95084 383 aa6.4□□□□□ -1.38
USP28-202ENST00000535607 SCELO95171 688 aa6.4□□□□□ -1.38
USP28-202ENST00000535607 C22orf31O95567 290 aa6.4□□□□□ -1.38
USP28-202ENST00000535607 ITGB3P05106 788 aa6.4□□□□□ -1.38
USP28-202ENST00000535607 YES1P07947 543 aa6.4□□□□□ -1.38
USP28-202ENST00000535607 ITGAMP11215 1152 aa6.4□□□□□ -1.38
USP28-202ENST00000535607 CR2P20023 1033 aa6.4□□□□□ -1.38
USP28-202ENST00000535607 SLC6A2P23975 617 aa6.4□□□□□ -1.38
USP28-202ENST00000535607 HTR1BP28222 390 aa6.4□□□□□ -1.38
USP28-202ENST00000535607 ELK4P28324 431 aa6.4□□□□□ -1.38
USP28-202ENST00000535607 CCND3P30281 292 aaPredicted RBP6.4□□□□□ -1.38
USP28-202ENST00000535607 CNR2P34972 360 aa6.4□□□□□ -1.38
USP28-202ENST00000535607 RPS19P39019 145 aaKnown RBP6.4□□□□□ -1.38
USP28-202ENST00000535607 EIF2DP41214 584 aaKnown RBP6.4□□□□□ -1.38
USP28-202ENST00000535607 TNFSF9P41273 254 aa6.4□□□□□ -1.38
USP28-202ENST00000535607 MATKP42679 507 aa6.4□□□□□ -1.38
USP28-202ENST00000535607 MTHFRP42898 656 aa6.4□□□□□ -1.38
USP28-202ENST00000535607 SULT1E1P49888 294 aa6.4□□□□□ -1.38
USP28-202ENST00000535607 OR2B6P58173 313 aa6.4□□□□□ -1.38
USP28-202ENST00000535607 HERVK_113P63132 956 aa6.4□□□□□ -1.38
USP28-202ENST00000535607 TMEM132DQ14C87 1099 aa6.4□□□□□ -1.38
USP28-202ENST00000535607 MAPK11Q15759 364 aa6.4□□□□□ -1.38
USP28-202ENST00000535607 CTF1Q16619 201 aa6.4□□□□□ -1.38
USP28-202ENST00000535607 CA9Q16790 459 aa6.4□□□□□ -1.38
USP28-202ENST00000535607 TIMM50Q3ZCQ8 353 aa6.4□□□□□ -1.38
USP28-202ENST00000535607 FBXO43Q4G163 708 aa6.4□□□□□ -1.38
USP28-202ENST00000535607 ARMCX4Q5H9R4 360 aa6.4□□□□□ -1.38
USP28-202ENST00000535607 TECRLQ5HYJ1 363 aa6.4□□□□□ -1.38
USP28-202ENST00000535607 UBXN11Q5T124 520 aa6.4□□□□□ -1.38
USP28-202ENST00000535607 OTUD3Q5T2D3 398 aaPredicted RBP6.4□□□□□ -1.38
USP28-202ENST00000535607 SYT6Q5T7P8 510 aaPredicted RBP6.4□□□□□ -1.38
USP28-202ENST00000535607 AGAP6Q5VW22 663 aa6.4□□□□□ -1.38
USP28-202ENST00000535607 SIGIRRQ6IA17 410 aa6.4□□□□□ -1.38
USP28-202ENST00000535607 GLYATQ6IB77 296 aa6.4□□□□□ -1.38
USP28-202ENST00000535607 CCSAPQ6IQ19 270 aaPredicted RBP6.4□□□□□ -1.38
USP28-202ENST00000535607 LILRA6Q6PI73 481 aa6.4□□□□□ -1.38
USP28-202ENST00000535607 CES3Q6UWW8 571 aa6.4□□□□□ -1.38
USP28-202ENST00000535607 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP6.4□□□□□ -1.38
USP28-202ENST00000535607 SLC16A12Q6ZSM3 486 aa6.4□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms