RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296		A0A1W2PPQ1	181 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296	TMEM221	A6NGB7	291 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296		E9PQ18	207 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296	IFIT3	O14879	490 aa	Known RBP	2.42	□□□□□ -2.02
CD44-238	ENST00000534296	SPRY1	O43609	319 aa	Predicted RBP	2.42	□□□□□ -2.02
CD44-238	ENST00000534296	GLRA3	O75311	464 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296	KHDRBS3	O75525	346 aa	Known RBP	2.42	□□□□□ -2.02
CD44-238	ENST00000534296	GPI	P06744	558 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296	CAST	P20810	708 aa	Known RBP	2.42	□□□□□ -2.02
CD44-238	ENST00000534296	LHCGR	P22888	699 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296	MPZ	P25189	248 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296	PTGER4	P35408	488 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296	MMP12	P39900	470 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296	TSFM	P43897	325 aa	Known RBP	2.42	□□□□□ -2.02
CD44-238	ENST00000534296	NPBWR1	P48145	328 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296	CYCS	P99999	105 aa	Known RBP	2.42	□□□□□ -2.02
CD44-238	ENST00000534296	MS4A2	Q01362	244 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296	CACNG1	Q06432	222 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296	ZNF415	Q09FC8	603 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296	ITGA7	Q13683	1181 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296	SCARB2	Q14108	478 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296	OPCML	Q14982	345 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296	LPAL2	Q16609	132 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296	CA9	Q16790	459 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296	MTHFSD	Q2M296	383 aa	Known RBP	2.42	□□□□□ -2.02
CD44-238	ENST00000534296	CTU2	Q2VPK5	515 aa	Known RBP	2.42	□□□□□ -2.02
CD44-238	ENST00000534296	UGT3A2	Q3SY77	523 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296	KRT71	Q3SY84	523 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296	PHLDA2	Q53GA4	152 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296	NHSL2	Q5HYW2	709 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296	DDX59	Q5T1V6	619 aa	Known RBP eCLIP	2.42	□□□□□ -2.02
CD44-238	ENST00000534296	C1QTNF12	Q5T7M4	302 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296	MACC1	Q6ZN28	852 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296	CHMP1B	Q7LBR1	199 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296	SPATA19	Q7Z5L4	167 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296	NRARP	Q7Z6K4	114 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296	ABI3BP	Q7Z7G0	1075 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296		Q8NFD4	153 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296	OR4C15	Q8NGM1	316 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296	GOT1L1	Q8NHS2	421 aa	Predicted RBP	2.42	□□□□□ -2.02
CD44-238	ENST00000534296	GDAP1	Q8TB36	358 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296	MAPK15	Q8TD08	544 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296	FAM222B	Q8WU58	562 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296	HEXDC	Q8WVB3	486 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296	SEPT1	Q8WYJ6	367 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296	NSMAF	Q92636	917 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296	LRRC3B	Q96PB8	259 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296	BTBD9	Q96Q07	612 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296	NKX3-1	Q99801	234 aa	Predicted RBP	2.42	□□□□□ -2.02
CD44-238	ENST00000534296	CDK19	Q9BWU1	502 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296	WWTR1	Q9GZV5	400 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296	FZD8	Q9H461	694 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296	RPF1	Q9H9Y2	349 aa	Known RBP	2.42	□□□□□ -2.02
CD44-238	ENST00000534296	SLC7A10	Q9NS82	523 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296	ZNF701	Q9NV72	531 aa	Predicted RBP	2.42	□□□□□ -2.02
CD44-238	ENST00000534296	TEX10	Q9NXF1	929 aa	Predicted RBP	2.42	□□□□□ -2.02
CD44-238	ENST00000534296	RNF186	Q9NXI6	227 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296	PAK5	Q9P286	719 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296	LRWD1	Q9UFC0	647 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296	PA2G4	Q9UQ80	394 aa	Known RBP	2.42	□□□□□ -2.02
CD44-238	ENST00000534296	RUVBL2	Q9Y230	463 aa	Known RBP	2.42	□□□□□ -2.02
CD44-238	ENST00000534296	SELENOK	Q9Y6D0	94 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296	COLEC10	Q9Y6Z7	277 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296		R4GN57	208 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296	SMCHD1	A6NHR9	2005 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296	IGSF1	Q8N6C5	1336 aa		2.42	□□□□□ -2.02
CD44-238	ENST00000534296		A0A0U1RQG5	324 aa	Predicted RBP	2.41	□□□□□ -2.02
CD44-238	ENST00000534296		A0A1W2PPM1	405 aa		2.41	□□□□□ -2.02
CD44-238	ENST00000534296	OOEP	A6NGQ2	149 aa		2.41	□□□□□ -2.02
CD44-238	ENST00000534296	YDJC	A8MPS7	323 aa		2.41	□□□□□ -2.02
CD44-238	ENST00000534296		H0Y626	953 aa		2.41	□□□□□ -2.02
CD44-238	ENST00000534296	CCER2	I3L3R5	266 aa		2.41	□□□□□ -2.02
CD44-238	ENST00000534296	ZNF195	O14628	629 aa		2.41	□□□□□ -2.02
CD44-238	ENST00000534296	PTGES	O14684	152 aa		2.41	□□□□□ -2.02
CD44-238	ENST00000534296	PPIP5K2	O43314	1243 aa		2.41	□□□□□ -2.02
CD44-238	ENST00000534296	OR10H2	O60403	315 aa		2.41	□□□□□ -2.02
CD44-238	ENST00000534296	MAGEC1	O60732	1142 aa		2.41	□□□□□ -2.02
CD44-238	ENST00000534296	CDK2AP2	O75956	126 aa		2.41	□□□□□ -2.02
CD44-238	ENST00000534296	TOMM70	O94826	608 aa		2.41	□□□□□ -2.02
CD44-238	ENST00000534296	GSR	P00390	522 aa		2.41	□□□□□ -2.02
CD44-238	ENST00000534296	CSN3	P07498	182 aa		2.41	□□□□□ -2.02
CD44-238	ENST00000534296	SLC2A2	P11168	524 aa	Predicted RBP	2.41	□□□□□ -2.02
CD44-238	ENST00000534296	DARS	P14868	501 aa	Known RBP	2.41	□□□□□ -2.02
CD44-238	ENST00000534296	UGT1A4	P22310	534 aa		2.41	□□□□□ -2.02
CD44-238	ENST00000534296	RGS7	P49802	495 aa		2.41	□□□□□ -2.02
CD44-238	ENST00000534296	DNA2	P51530	1060 aa		2.41	□□□□□ -2.02
CD44-238	ENST00000534296	VAMP7	P51809	220 aa		2.41	□□□□□ -2.02
CD44-238	ENST00000534296	NAGLU	P54802	743 aa		2.41	□□□□□ -2.02
CD44-238	ENST00000534296	UBASH3A	P57075	661 aa		2.41	□□□□□ -2.02
CD44-238	ENST00000534296	KRTAP10-12	P60413	245 aa		2.41	□□□□□ -2.02
CD44-238	ENST00000534296	MAT1A	Q00266	395 aa	Known RBP	2.41	□□□□□ -2.02
CD44-238	ENST00000534296	GUCY2D	Q02846	1103 aa		2.41	□□□□□ -2.02
CD44-238	ENST00000534296	YWHAH	Q04917	246 aa	Predicted RBP	2.41	□□□□□ -2.02
CD44-238	ENST00000534296	IL10RB	Q08334	325 aa		2.41	□□□□□ -2.02
CD44-238	ENST00000534296	RAPSN	Q13702	412 aa		2.41	□□□□□ -2.02
CD44-238	ENST00000534296	CDO1	Q16878	200 aa		2.41	□□□□□ -2.02
CD44-238	ENST00000534296	ALDH1L2	Q3SY69	923 aa		2.41	□□□□□ -2.02
CD44-238	ENST00000534296	C2CD6	Q53TS8	623 aa		2.41	□□□□□ -2.02
CD44-238	ENST00000534296	XKR6	Q5GH73	641 aa		2.41	□□□□□ -2.02
CD44-238	ENST00000534296	CCDC158	Q5M9N0	1113 aa		2.41	□□□□□ -2.02

Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms