RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 EML5Q05BV3 1969 aa3.7□□□□□ -1.82
CD44-235ENST00000532339 DOCK7Q96N67 2140 aa3.7□□□□□ -1.82
CD44-235ENST00000532339 ABCB11O95342 1321 aa3.7□□□□□ -1.82
CD44-235ENST00000532339 ATXN2Q99700 1313 aaKnown RBP3.7□□□□□ -1.82
CD44-235ENST00000532339 FAM172BPA6NC97 362 aa3.69□□□□□ -1.82
CD44-235ENST00000532339 HS6ST1O60243 411 aa3.69□□□□□ -1.82
CD44-235ENST00000532339 ZIC3O60481 467 aa3.69□□□□□ -1.82
CD44-235ENST00000532339 SYNCRIPO60506 623 aaKnown RBP3.69□□□□□ -1.82
CD44-235ENST00000532339 MMP2P08253 660 aa3.69□□□□□ -1.82
CD44-235ENST00000532339 CD58P19256 250 aa3.69□□□□□ -1.82
CD44-235ENST00000532339 SAT1P21673 171 aa3.69□□□□□ -1.82
CD44-235ENST00000532339 PON1P27169 355 aa3.69□□□□□ -1.82
CD44-235ENST00000532339 HOXA9P31269 272 aa3.69□□□□□ -1.82
CD44-235ENST00000532339 PIGAP37287 484 aa3.69□□□□□ -1.82
CD44-235ENST00000532339 PIK3CAP42336 1068 aa3.69□□□□□ -1.82
CD44-235ENST00000532339 ZNF132P52740 706 aa3.69□□□□□ -1.82
CD44-235ENST00000532339 PPP5CP53041 499 aa3.69□□□□□ -1.82
CD44-235ENST00000532339 ZNF155Q12901 538 aaPredicted RBP3.69□□□□□ -1.82
CD44-235ENST00000532339 ZBTB17Q13105 803 aa3.69□□□□□ -1.82
CD44-235ENST00000532339 RBBP5Q15291 538 aaKnown RBP3.69□□□□□ -1.82
CD44-235ENST00000532339 OASLQ15646 514 aaKnown RBP3.69□□□□□ -1.82
CD44-235ENST00000532339 TMEM266Q2M3C6 531 aa3.69□□□□□ -1.82
CD44-235ENST00000532339 C2orf68Q2NKX9 166 aa3.69□□□□□ -1.82
CD44-235ENST00000532339 ZSCAN23Q3MJ62 389 aa3.69□□□□□ -1.82
CD44-235ENST00000532339 ATP13A5Q4VNC0 1218 aa3.69□□□□□ -1.82
CD44-235ENST00000532339 CCDC184Q52MB2 194 aa3.69□□□□□ -1.82
CD44-235ENST00000532339 PPP6R3Q5H9R7 873 aaPredicted RBP3.69□□□□□ -1.82
CD44-235ENST00000532339 CEP85LQ5SZL2 805 aa3.69□□□□□ -1.82
CD44-235ENST00000532339 ACSM2BQ68CK6 577 aa3.69□□□□□ -1.82
CD44-235ENST00000532339 ADAM5Q6NVV9 412 aa3.69□□□□□ -1.82
CD44-235ENST00000532339 TRMT1LQ7Z2T5 733 aaKnown RBP3.69□□□□□ -1.82
CD44-235ENST00000532339 ZNF441Q8N8Z8 693 aa3.69□□□□□ -1.82
CD44-235ENST00000532339 HJURPQ8NCD3 748 aaPredicted RBP3.69□□□□□ -1.82
CD44-235ENST00000532339 GMCL1P1Q8NEA9 526 aa3.69□□□□□ -1.82
CD44-235ENST00000532339 BEST2Q8NFU1 509 aa3.69□□□□□ -1.82
CD44-235ENST00000532339 KCNE4Q8WWG9 221 aa3.69□□□□□ -1.82
CD44-235ENST00000532339 TANKQ92844 425 aa3.69□□□□□ -1.82
CD44-235ENST00000532339 IGSF8Q969P0 613 aa3.69□□□□□ -1.82
CD44-235ENST00000532339 SLC41A2Q96JW4 573 aa3.69□□□□□ -1.82
CD44-235ENST00000532339 FAM20AQ96MK3 541 aa3.69□□□□□ -1.82
CD44-235ENST00000532339 ZNF578Q96N58 590 aaPredicted RBP3.69□□□□□ -1.82
CD44-235ENST00000532339 ZMAT2Q96NC0 199 aaKnown RBP3.69□□□□□ -1.82
CD44-235ENST00000532339 IWS1Q96ST2 819 aa3.69□□□□□ -1.82
CD44-235ENST00000532339 CSF3RQ99062 836 aa3.69□□□□□ -1.82
CD44-235ENST00000532339 NCAPGQ9BPX3 1015 aa3.69□□□□□ -1.82
CD44-235ENST00000532339 NDST4Q9H3R1 872 aa3.69□□□□□ -1.82
CD44-235ENST00000532339 SH3GLB2Q9NR46 395 aa3.69□□□□□ -1.82
CD44-235ENST00000532339 MARCH4Q9P2E8 410 aaPredicted RBP3.69□□□□□ -1.82
CD44-235ENST00000532339 MAGED1Q9Y5V3 778 aaPredicted RBP3.69□□□□□ -1.82
CD44-235ENST00000532339 CEPT1Q9Y6K0 416 aa3.69□□□□□ -1.82
CD44-235ENST00000532339 PCDH15Q96QU1 1955 aa3.69□□□□□ -1.82
CD44-235ENST00000532339 CCDC171Q6TFL3 1326 aa3.69□□□□□ -1.82
CD44-235ENST00000532339 PI4KAP42356 2102 aa3.68□□□□□ -1.82
CD44-235ENST00000532339 PKD1L1Q8TDX9 2849 aa3.68□□□□□ -1.82
CD44-235ENST00000532339 ADAMTS9Q9P2N4 1935 aa3.68□□□□□ -1.82
CD44-235ENST00000532339 H7C0S8 307 aa3.68□□□□□ -1.82
CD44-235ENST00000532339 FLRT2O43155 660 aa3.68□□□□□ -1.82
CD44-235ENST00000532339 RPS6KA5O75582 802 aa3.68□□□□□ -1.82
CD44-235ENST00000532339 GGPS1O95749 300 aa3.68□□□□□ -1.82
CD44-235ENST00000532339 FTCDO95954 541 aa3.68□□□□□ -1.82
CD44-235ENST00000532339 CRYAAP02489 173 aa3.68□□□□□ -1.82
CD44-235ENST00000532339 ZNF883P0CG24 379 aa3.68□□□□□ -1.82
CD44-235ENST00000532339 SRCP12931 536 aa3.68□□□□□ -1.82
CD44-235ENST00000532339 TMEM11P17152 192 aa3.68□□□□□ -1.82
CD44-235ENST00000532339 CHATP28329 748 aa3.68□□□□□ -1.82
CD44-235ENST00000532339 ACADLP28330 430 aa3.68□□□□□ -1.82
CD44-235ENST00000532339 GLIPR1P48060 266 aa3.68□□□□□ -1.82
CD44-235ENST00000532339 PNLIPRP2P54317 469 aa3.68□□□□□ -1.82
CD44-235ENST00000532339 PHEXP78562 749 aa3.68□□□□□ -1.82
CD44-235ENST00000532339 SORDQ00796 357 aa3.68□□□□□ -1.82
CD44-235ENST00000532339 NAE1Q13564 534 aa3.68□□□□□ -1.82
CD44-235ENST00000532339 PON2Q15165 354 aa3.68□□□□□ -1.82
CD44-235ENST00000532339 ADIPOQQ15848 244 aa3.68□□□□□ -1.82
CD44-235ENST00000532339 SYT16Q17RD7 645 aa3.68□□□□□ -1.82
CD44-235ENST00000532339 CLLU1OSQ5K130 101 aa3.68□□□□□ -1.82
CD44-235ENST00000532339 LRIF1Q5T3J3 769 aa3.68□□□□□ -1.82
CD44-235ENST00000532339 PLEKHA7Q6IQ23 1121 aa3.68□□□□□ -1.82
CD44-235ENST00000532339 VITQ6UXI7 678 aa3.68□□□□□ -1.82
CD44-235ENST00000532339 TAOK1Q7L7X3 1001 aa3.68□□□□□ -1.82
CD44-235ENST00000532339 LINGO2Q7L985 606 aa3.68□□□□□ -1.82
CD44-235ENST00000532339 TSPAN33Q86UF1 283 aa3.68□□□□□ -1.82
CD44-235ENST00000532339 HAPLN4Q86UW8 402 aa3.68□□□□□ -1.82
CD44-235ENST00000532339 DNAAF5Q86Y56 855 aa3.68□□□□□ -1.82
CD44-235ENST00000532339 WDR63Q8IWG1 891 aa3.68□□□□□ -1.82
CD44-235ENST00000532339 RNF168Q8IYW5 571 aaPredicted RBP3.68□□□□□ -1.82
CD44-235ENST00000532339 OR14L1PQ8NHC6 308 aa3.68□□□□□ -1.82
CD44-235ENST00000532339 LNX1Q8TBB1 728 aaPredicted RBP3.68□□□□□ -1.82
CD44-235ENST00000532339 ZNF564Q8TBZ8 553 aaPredicted RBP3.68□□□□□ -1.82
CD44-235ENST00000532339 ING5Q8WYH8 240 aa3.68□□□□□ -1.82
CD44-235ENST00000532339 FIG4Q92562 907 aa3.68□□□□□ -1.82
CD44-235ENST00000532339 RRNAD1Q96FB5 475 aaKnown RBP3.68□□□□□ -1.82
CD44-235ENST00000532339 SEPT5Q99719 369 aaPredicted RBP3.68□□□□□ -1.82
CD44-235ENST00000532339 RIOK1Q9BRS2 568 aaKnown RBP3.68□□□□□ -1.82
CD44-235ENST00000532339 CRNKL1Q9BZJ0 848 aaKnown RBP3.68□□□□□ -1.82
CD44-235ENST00000532339 KLHL4Q9C0H6 718 aa3.68□□□□□ -1.82
CD44-235ENST00000532339 FAM49AQ9H0Q0 323 aaPredicted RBP3.68□□□□□ -1.82
CD44-235ENST00000532339 NOX4Q9NPH5 578 aa3.68□□□□□ -1.82
CD44-235ENST00000532339 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP3.68□□□□□ -1.82
CD44-235ENST00000532339 CISD1Q9NZ45 108 aaKnown RBP3.68□□□□□ -1.82
CD44-235ENST00000532339 CLIP2Q9UDT6 1046 aa3.68□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms