RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 IRAK4Q9NWZ3 460 aa10.14□□□□□ -0.79
CD44-227ENST00000528086 NDOR1Q9UHB4 597 aa10.14□□□□□ -0.79
CD44-227ENST00000528086 DMGDHQ9UI17 866 aaKnown RBP10.14□□□□□ -0.79
CD44-227ENST00000528086 CDC23Q9UJX2 597 aa10.14□□□□□ -0.79
CD44-227ENST00000528086 CORO1CQ9ULV4 474 aaPredicted RBP10.14□□□□□ -0.79
CD44-227ENST00000528086 USP9XQ93008 2570 aaPredicted RBP10.14□□□□□ -0.79
CD44-227ENST00000528086 KCNE1BA0A087WTH5 132 aa10.13□□□□□ -0.79
CD44-227ENST00000528086 NPEPPSL1A6NEC2 478 aa10.13□□□□□ -0.79
CD44-227ENST00000528086 OR2W5A6NFC9 320 aa10.13□□□□□ -0.79
CD44-227ENST00000528086 C4orf51C9J302 202 aa10.13□□□□□ -0.79
CD44-227ENST00000528086 MKRN2OSH3BPM6 223 aa10.13□□□□□ -0.79
CD44-227ENST00000528086 JRKO75564 520 aa10.13□□□□□ -0.79
CD44-227ENST00000528086 B3GALT4O96024 378 aa10.13□□□□□ -0.79
CD44-227ENST00000528086 CDH1P12830 882 aa10.13□□□□□ -0.79
CD44-227ENST00000528086 EZRP15311 586 aaKnown RBP10.13□□□□□ -0.79
CD44-227ENST00000528086 MMP11P24347 488 aa10.13□□□□□ -0.79
CD44-227ENST00000528086 ECHS1P30084 290 aa10.13□□□□□ -0.79
CD44-227ENST00000528086 FOLR3P41439 243 aa10.13□□□□□ -0.79
CD44-227ENST00000528086 RGS4P49798 205 aa10.13□□□□□ -0.79
CD44-227ENST00000528086 SOX8P57073 446 aa10.13□□□□□ -0.79
CD44-227ENST00000528086 MAT1AQ00266 395 aaKnown RBP10.13□□□□□ -0.79
CD44-227ENST00000528086 MEF2AQ02078 507 aaPredicted RBP10.13□□□□□ -0.79
CD44-227ENST00000528086 KLC1Q07866 573 aa10.13□□□□□ -0.79
CD44-227ENST00000528086 DLG1Q12959 904 aa10.13□□□□□ -0.79
CD44-227ENST00000528086 PDAP1Q13442 181 aaKnown RBP10.13□□□□□ -0.79
CD44-227ENST00000528086 PRR30Q53SZ7 412 aaPredicted RBP10.13□□□□□ -0.79
CD44-227ENST00000528086 CATSPEREQ5SY80 951 aa10.13□□□□□ -0.79
CD44-227ENST00000528086 ATG9BQ674R7 924 aa10.13□□□□□ -0.79
CD44-227ENST00000528086 LCTLQ6UWM7 567 aa10.13□□□□□ -0.79
CD44-227ENST00000528086 MAATS1Q7Z4T9 603 aa10.13□□□□□ -0.79
CD44-227ENST00000528086 MYO1HQ8N1T3 1032 aa10.13□□□□□ -0.79
CD44-227ENST00000528086 RAB42Q8N4Z0 105 aa10.13□□□□□ -0.79
CD44-227ENST00000528086 KCT2Q8NC54 265 aa10.13□□□□□ -0.79
CD44-227ENST00000528086 MCOLN3Q8TDD5 553 aa10.13□□□□□ -0.79
CD44-227ENST00000528086 PYROXD1Q8WU10 500 aa10.13□□□□□ -0.79
CD44-227ENST00000528086 SMAD5Q99717 465 aaKnown RBP10.13□□□□□ -0.79
CD44-227ENST00000528086 SLC25A23Q9BV35 468 aa10.13□□□□□ -0.79
CD44-227ENST00000528086 SARGQ9BW04 601 aa10.13□□□□□ -0.79
CD44-227ENST00000528086 ZNF552Q9H707 407 aaPredicted RBP10.13□□□□□ -0.79
CD44-227ENST00000528086 ZNF304Q9HCX3 659 aa10.13□□□□□ -0.79
CD44-227ENST00000528086 CCDC177Q9NQR7 707 aaPredicted RBP10.13□□□□□ -0.79
CD44-227ENST00000528086 TMEM184CQ9NVA4 438 aa10.13□□□□□ -0.79
CD44-227ENST00000528086 UTP6Q9NYH9 597 aaKnown RBP10.13□□□□□ -0.79
CD44-227ENST00000528086 ZFATQ9P243 1243 aa10.13□□□□□ -0.79
CD44-227ENST00000528086 PLAAQ9Y263 795 aa10.13□□□□□ -0.79
CD44-227ENST00000528086 CSAG2Q9Y5P2 127 aa10.13□□□□□ -0.79
CD44-227ENST00000528086 DOPEY2Q9Y3R5 2298 aa10.13□□□□□ -0.79
CD44-227ENST00000528086 CPAMD8Q8IZJ3 1885 aa10.13□□□□□ -0.79
CD44-227ENST00000528086 A0A0A6YYC8 382 aaPredicted RBP10.12□□□□□ -0.79
CD44-227ENST00000528086 I3L1I5 382 aaPredicted RBP10.12□□□□□ -0.79
CD44-227ENST00000528086 AGPSO00116 658 aa10.12□□□□□ -0.79
CD44-227ENST00000528086 EIF3HO15372 352 aaKnown RBP eCLIP10.12□□□□□ -0.79
CD44-227ENST00000528086 TAPBPO15533 448 aa10.12□□□□□ -0.79
CD44-227ENST00000528086 PHGDHO43175 533 aaKnown RBP10.12□□□□□ -0.79
CD44-227ENST00000528086 SORBS2O94875 1100 aaKnown RBP10.12□□□□□ -0.79
CD44-227ENST00000528086 WISP1O95388 367 aa10.12□□□□□ -0.79
CD44-227ENST00000528086 GUCA1CO95843 209 aa10.12□□□□□ -0.79
CD44-227ENST00000528086 TBX6O95947 436 aaPredicted RBP10.12□□□□□ -0.79
CD44-227ENST00000528086 ZGLP1P0C6A0 271 aa10.12□□□□□ -0.79
CD44-227ENST00000528086 EPORP19235 508 aa10.12□□□□□ -0.79
CD44-227ENST00000528086 SAT1P21673 171 aa10.12□□□□□ -0.79
CD44-227ENST00000528086 MAGEA4P43358 317 aa10.12□□□□□ -0.79
CD44-227ENST00000528086 MLLT10P55197 1068 aa10.12□□□□□ -0.79
CD44-227ENST00000528086 FOXK1P85037 733 aa10.12□□□□□ -0.79
CD44-227ENST00000528086 HYAL2Q12891 473 aa10.12□□□□□ -0.79
CD44-227ENST00000528086 OR4D1Q15615 310 aa10.12□□□□□ -0.79
CD44-227ENST00000528086 TSNQ15631 228 aaKnown RBP10.12□□□□□ -0.79
CD44-227ENST00000528086 ZKSCAN8Q15776 578 aaPredicted RBP10.12□□□□□ -0.79
CD44-227ENST00000528086 MUM1Q2TAK8 710 aa10.12□□□□□ -0.79
CD44-227ENST00000528086 FAM214AQ32MH5 1076 aa10.12□□□□□ -0.79
CD44-227ENST00000528086 KBTBD12Q3ZCT8 623 aa10.12□□□□□ -0.79
CD44-227ENST00000528086 CRB2Q5IJ48 1285 aa10.12□□□□□ -0.79
CD44-227ENST00000528086 LRRC8EQ6NSJ5 796 aa10.12□□□□□ -0.79
CD44-227ENST00000528086 TMEM214Q6NUQ4 689 aaKnown RBP10.12□□□□□ -0.79
CD44-227ENST00000528086 C3orf62Q6ZUJ4 267 aa10.12□□□□□ -0.79
CD44-227ENST00000528086 MED25Q71SY5 747 aa10.12□□□□□ -0.79
CD44-227ENST00000528086 RAB43Q86YS6 212 aa10.12□□□□□ -0.79
CD44-227ENST00000528086 ZC3H7AQ8IWR0 971 aaKnown RBP10.12□□□□□ -0.79
CD44-227ENST00000528086 PRSS58Q8IYP2 241 aa10.12□□□□□ -0.79
CD44-227ENST00000528086 TMEM102Q8N9M5 508 aaPredicted RBP10.12□□□□□ -0.79
CD44-227ENST00000528086 ANKRD53Q8N9V6 530 aa10.12□□□□□ -0.79
CD44-227ENST00000528086 TTC29Q8NA56 475 aaPredicted RBP10.12□□□□□ -0.79
CD44-227ENST00000528086 OR11G2Q8NGC1 345 aa10.12□□□□□ -0.79
CD44-227ENST00000528086 NEIL2Q969S2 332 aa10.12□□□□□ -0.79
CD44-227ENST00000528086 MIB2Q96AX9 1013 aa10.12□□□□□ -0.79
CD44-227ENST00000528086 C8orf44Q96CB5 159 aa10.12□□□□□ -0.79
CD44-227ENST00000528086 GPR22Q99680 433 aa10.12□□□□□ -0.79
CD44-227ENST00000528086 RBBP8Q99708 897 aa10.12□□□□□ -0.79
CD44-227ENST00000528086 ACSS2Q9NR19 701 aa10.12□□□□□ -0.79
CD44-227ENST00000528086 ARL15Q9NXU5 204 aa10.12□□□□□ -0.79
CD44-227ENST00000528086 ANAPC2Q9UJX6 822 aa10.12□□□□□ -0.79
CD44-227ENST00000528086 FBXL4Q9UKA2 621 aa10.12□□□□□ -0.79
CD44-227ENST00000528086 NOVA2Q9UNW9 492 aaKnown RBP10.12□□□□□ -0.79
CD44-227ENST00000528086 PADI2Q9Y2J8 665 aa10.12□□□□□ -0.79
CD44-227ENST00000528086 ASB1Q9Y576 335 aa10.12□□□□□ -0.79
CD44-227ENST00000528086 PTPN13Q12923 2485 aa10.12□□□□□ -0.79
CD44-227ENST00000528086 HIVEP3Q5T1R4 2406 aa10.12□□□□□ -0.79
CD44-227ENST00000528086 A0A1W2PQ72 361 aa10.11□□□□□ -0.79
CD44-227ENST00000528086 CLEC18AA5D8T8 446 aa10.11□□□□□ -0.79
CD44-227ENST00000528086 ZNF839A8K0R7 811 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms