RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 TSPY2A6NKD2 308 aa3.7□□□□□ -1.82
CD44-215ENST00000525241 FAM86B1E9PN63 330 aa3.7□□□□□ -1.82
CD44-215ENST00000525241 GBAP04062 536 aa3.7□□□□□ -1.82
CD44-215ENST00000525241 CENPBP07199 599 aaPredicted RBP3.7□□□□□ -1.82
CD44-215ENST00000525241 FAM86B2P0C5J1 330 aa3.7□□□□□ -1.82
CD44-215ENST00000525241 DUTP33316 252 aaKnown RBP3.7□□□□□ -1.82
CD44-215ENST00000525241 OR3A2P47893 321 aa3.7□□□□□ -1.82
CD44-215ENST00000525241 PTENP60484 403 aa3.7□□□□□ -1.82
CD44-215ENST00000525241 TNK1Q13470 666 aa3.7□□□□□ -1.82
CD44-215ENST00000525241 TRA2AQ13595 282 aaKnown RBP eCLIP3.7□□□□□ -1.82
CD44-215ENST00000525241 MTF1Q14872 753 aa3.7□□□□□ -1.82
CD44-215ENST00000525241 TMEM132DQ14C87 1099 aa3.7□□□□□ -1.82
CD44-215ENST00000525241 RBBP7Q16576 425 aa3.7□□□□□ -1.82
CD44-215ENST00000525241 LRRC73Q5JTD7 316 aa3.7□□□□□ -1.82
CD44-215ENST00000525241 BSPRYQ5W0U4 402 aa3.7□□□□□ -1.82
CD44-215ENST00000525241 FAM166AQ6J272 317 aa3.7□□□□□ -1.82
CD44-215ENST00000525241 FAAP20Q6NZ36 180 aa3.7□□□□□ -1.82
CD44-215ENST00000525241 FCRLAQ7L513 359 aa3.7□□□□□ -1.82
CD44-215ENST00000525241 AMIGO1Q86WK6 493 aa3.7□□□□□ -1.82
CD44-215ENST00000525241 ZNF485Q8NCK3 441 aa3.7□□□□□ -1.82
CD44-215ENST00000525241 ZNF519Q8TB69 540 aa3.7□□□□□ -1.82
CD44-215ENST00000525241 NSMCE3Q96MG7 304 aa3.7□□□□□ -1.82
CD44-215ENST00000525241 ZMAT2Q96NC0 199 aaKnown RBP3.7□□□□□ -1.82
CD44-215ENST00000525241 USP28Q96RU2 1077 aa3.7□□□□□ -1.82
CD44-215ENST00000525241 EDEM3Q9BZQ6 932 aa3.7□□□□□ -1.82
CD44-215ENST00000525241 EGLN1Q9GZT9 426 aa3.7□□□□□ -1.82
CD44-215ENST00000525241 RIMS4Q9H426 269 aaPredicted RBP3.7□□□□□ -1.82
CD44-215ENST00000525241 PHPT1Q9NRX4 125 aaPredicted RBP3.7□□□□□ -1.82
CD44-215ENST00000525241 PKD2L2Q9NZM6 624 aa3.7□□□□□ -1.82
CD44-215ENST00000525241 ELF5Q9UKW6 265 aaPredicted RBP3.7□□□□□ -1.82
CD44-215ENST00000525241 MPTX1A8MV57 137 aa3.69□□□□□ -1.82
CD44-215ENST00000525241 F8VVB4 439 aa3.69□□□□□ -1.82
CD44-215ENST00000525241 F8VWA3 439 aa3.69□□□□□ -1.82
CD44-215ENST00000525241 DCXO43602 365 aa3.69□□□□□ -1.82
CD44-215ENST00000525241 HSPA4LO95757 839 aa3.69□□□□□ -1.82
CD44-215ENST00000525241 FAM58BPP0C7Q3 252 aa3.69□□□□□ -1.82
CD44-215ENST00000525241 STAG3L1P0CL83 205 aa3.69□□□□□ -1.82
CD44-215ENST00000525241 SPP1P10451 314 aa3.69□□□□□ -1.82
CD44-215ENST00000525241 PRKAR1AP10644 381 aa3.69□□□□□ -1.82
CD44-215ENST00000525241 IFNAR1P17181 557 aa3.69□□□□□ -1.82
CD44-215ENST00000525241 EPORP19235 508 aa3.69□□□□□ -1.82
CD44-215ENST00000525241 ELAVL4P26378 380 aaKnown RBP3.69□□□□□ -1.82
CD44-215ENST00000525241 HLA-FP30511 346 aa3.69□□□□□ -1.82
CD44-215ENST00000525241 GP5P40197 560 aa3.69□□□□□ -1.82
CD44-215ENST00000525241 CETN2P41208 172 aa3.69□□□□□ -1.82
CD44-215ENST00000525241 CDX1P47902 265 aaPredicted RBP3.69□□□□□ -1.82
CD44-215ENST00000525241 GSCP56915 257 aaPredicted RBP3.69□□□□□ -1.82
CD44-215ENST00000525241 SRSF9Q13242 221 aaKnown RBP eCLIP3.69□□□□□ -1.82
CD44-215ENST00000525241 SGCGQ13326 291 aa3.69□□□□□ -1.82
CD44-215ENST00000525241 CDH18Q13634 790 aa3.69□□□□□ -1.82
CD44-215ENST00000525241 TAB1Q15750 504 aa3.69□□□□□ -1.82
CD44-215ENST00000525241 FASTKD1Q53R41 847 aaKnown RBP3.69□□□□□ -1.82
CD44-215ENST00000525241 FAM91A1Q658Y4 838 aa3.69□□□□□ -1.82
CD44-215ENST00000525241 OR4C11Q6IEV9 310 aa3.69□□□□□ -1.82
CD44-215ENST00000525241 FBXL22Q6P050 247 aa3.69□□□□□ -1.82
CD44-215ENST00000525241 CYB5D1Q6P9G0 228 aa3.69□□□□□ -1.82
CD44-215ENST00000525241 TRIM65Q6PJ69 517 aa3.69□□□□□ -1.82
CD44-215ENST00000525241 MOXD1Q6UVY6 613 aa3.69□□□□□ -1.82
CD44-215ENST00000525241 SLC24A5Q71RS6 500 aa3.69□□□□□ -1.82
CD44-215ENST00000525241 CATSPERDQ86XM0 798 aa3.69□□□□□ -1.82
CD44-215ENST00000525241 CCDC60Q8IWA6 550 aaPredicted RBP3.69□□□□□ -1.82
CD44-215ENST00000525241 THNSL1Q8IYQ7 743 aa3.69□□□□□ -1.82
CD44-215ENST00000525241 GPC2Q8N158 579 aa3.69□□□□□ -1.82
CD44-215ENST00000525241 HEXDCQ8WVB3 486 aa3.69□□□□□ -1.82
CD44-215ENST00000525241 ZNF689Q96CS4 500 aaPredicted RBP3.69□□□□□ -1.82
CD44-215ENST00000525241 C18orf12Q96KH6 178 aa3.69□□□□□ -1.82
CD44-215ENST00000525241 C2orf48Q96LS8 159 aa3.69□□□□□ -1.82
CD44-215ENST00000525241 BTBD9Q96Q07 612 aa3.69□□□□□ -1.82
CD44-215ENST00000525241 TDRD1Q9BXT4 1180 aaKnown RBP3.69□□□□□ -1.82
CD44-215ENST00000525241 NYXQ9GZU5 481 aa3.69□□□□□ -1.82
CD44-215ENST00000525241 SPHK2Q9NRA0 654 aa3.69□□□□□ -1.82
CD44-215ENST00000525241 A0A0J9YWU9 116 aa3.68□□□□□ -1.82
CD44-215ENST00000525241 HTR3EA5X5Y0 456 aa3.68□□□□□ -1.82
CD44-215ENST00000525241 SIX3O95343 332 aaPredicted RBP3.68□□□□□ -1.82
CD44-215ENST00000525241 IGHEP01854 428 aa3.68□□□□□ -1.82
CD44-215ENST00000525241 TSPY3P0CV98 308 aa3.68□□□□□ -1.82
CD44-215ENST00000525241 TSPY8P0CW00 308 aa3.68□□□□□ -1.82
CD44-215ENST00000525241 PRKACGP22612 351 aa3.68□□□□□ -1.82
CD44-215ENST00000525241 PSMB4P28070 264 aa3.68□□□□□ -1.82
CD44-215ENST00000525241 SFTPDP35247 375 aa3.68□□□□□ -1.82
CD44-215ENST00000525241 CAPZA1P52907 286 aa3.68□□□□□ -1.82
CD44-215ENST00000525241 HUNKP57058 714 aa3.68□□□□□ -1.82
CD44-215ENST00000525241 OR1D5P58170 312 aa3.68□□□□□ -1.82
CD44-215ENST00000525241 DCDC1P59894 354 aa3.68□□□□□ -1.82
CD44-215ENST00000525241 CYCSP99999 105 aaKnown RBP3.68□□□□□ -1.82
CD44-215ENST00000525241 TSPY1Q01534 308 aa3.68□□□□□ -1.82
CD44-215ENST00000525241 SULT2A1Q06520 285 aa3.68□□□□□ -1.82
CD44-215ENST00000525241 PSMD6Q15008 389 aa3.68□□□□□ -1.82
CD44-215ENST00000525241 NECTIN1Q15223 517 aa3.68□□□□□ -1.82
CD44-215ENST00000525241 SHEQ5VZ18 495 aa3.68□□□□□ -1.82
CD44-215ENST00000525241 BTNL8Q6UX41 500 aa3.68□□□□□ -1.82
CD44-215ENST00000525241 TMEM182Q6ZP80 229 aaPredicted RBP3.68□□□□□ -1.82
CD44-215ENST00000525241 SPATA19Q7Z5L4 167 aa3.68□□□□□ -1.82
CD44-215ENST00000525241 VSIG1Q86XK7 387 aa3.68□□□□□ -1.82
CD44-215ENST00000525241 TIGD4Q8IY51 512 aa3.68□□□□□ -1.82
CD44-215ENST00000525241 ZNF440Q8IYI8 595 aa3.68□□□□□ -1.82
CD44-215ENST00000525241 GBP7Q8N8V2 638 aaPredicted RBP3.68□□□□□ -1.82
CD44-215ENST00000525241 SETD6Q8TBK2 473 aa3.68□□□□□ -1.82
CD44-215ENST00000525241 ST6GALNAC6Q969X2 333 aa3.68□□□□□ -1.82
CD44-215ENST00000525241 IWS1Q96ST2 819 aa3.68□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms