RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 DDI2Q5TDH0 399 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 TMEM53Q6P2H8 277 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 MRPL10Q7Z7H8 261 aaKnown RBP8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 C10orf53Q8N6V4 93 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 LRRC17Q8N6Y2 441 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 DCAF4L2Q8NA75 395 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 AQP11Q8NBQ7 271 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 OR52L1Q8NGH7 329 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 ZNF671Q8TAW3 534 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 CITED4Q96RK1 184 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 SLC30A2Q9BRI3 323 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 EHD1Q9H4M9 534 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 GORASP2Q9H8Y8 452 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 HEBP1Q9NRV9 189 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 ABCD2Q9UBJ2 740 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 ANKRD33BA6NCL7 494 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 CD72P21854 359 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 HNF1BP35680 557 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 HMGCLP35914 325 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 ZNF140P52738 457 aaPredicted RBP8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 SLBPQ14493 270 aaKnown RBP eCLIP8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 SPCS2Q15005 226 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 TMEM207Q6UWW9 146 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 Q6ZNX1 250 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 CXorf40AQ8TE69 158 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 ZFP90Q8TF47 636 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 SMIM14Q96QK8 99 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 MAPKAP1Q9BPZ7 522 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 INPP5KQ9BT40 448 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 GPR62Q9BZJ7 368 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 DSN1Q9H410 356 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 DCAF13Q9NV06 445 aaKnown RBP8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 MS4A12Q9NXJ0 267 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 ZNF222Q9UK12 451 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 SARDHQ9UL12 918 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 YIPF1Q9Y548 306 aa8.16□□□□□ -1.1
LIMCH1-216ENST00000512820 MYADML2A6NDP7 307 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 HHLA1C9JL84 531 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 ACRV1P26436 265 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 PPP5CP53041 499 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 CARD16Q5EG05 197 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 TXNDC8Q6A555 127 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 ZNF730Q6ZMV8 503 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 TSPYL5Q86VY4 417 aaPredicted RBP8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 PHYKPLQ8IUZ5 450 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 TRIB3Q96RU7 358 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 HEPHQ9BQS7 1158 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 GPN2Q9H9Y4 310 aaPredicted RBP8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 TNFRSF12AQ9NP84 129 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 RPS6KB2Q9UBS0 482 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 INTS6Q9UL03 887 aaKnown RBP8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 ING4Q9UNL4 249 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 EFCAB14O75071 495 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 PSIP1O75475 530 aaKnown RBP8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 GBAP04062 536 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 CD1EP15812 388 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 XKP51811 444 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 ZNF181Q2M3W8 571 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 GPRC6AQ5T6X5 926 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 AGTRAPQ6RW13 159 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 OR4K1Q8NGD4 311 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 OR13F1Q8NGS4 319 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 KLHL6Q8WZ60 621 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 PPP1R16AQ96I34 528 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 WRAP53Q9BUR4 548 aaKnown RBP8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 SACM1LQ9NTJ5 587 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 DUS2Q9NX74 493 aaKnown RBP8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 MAN2B2Q9Y2E5 1009 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 HCN4Q9Y3Q4 1203 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 SPIN1Q9Y657 262 aaPredicted RBP8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 LCKP06239 509 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 ACLYP53396 1101 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 DSTNP60981 165 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 SP3Q02447 781 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 C5orf22Q49AR2 442 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 CYP27C1Q4G0S4 372 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 LDLRAD1Q5T700 205 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 ZNF517Q6ZMY9 492 aaPredicted RBP8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 KRT74Q7RTS7 529 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 PRSS48Q7RTY5 328 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 TRIM48Q8IWZ4 208 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 RASSF5Q8WWW0 418 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 TMEM203Q969S6 136 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 ALPK1Q96QP1 1244 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 BCL7BQ9BQE9 202 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 BRINP2Q9C0B6 783 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 SLC22A4Q9H015 551 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 TUBB1Q9H4B7 451 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 ANKRA2Q9H9E1 313 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 COMMD3Q9UBI1 195 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 MALT1Q9UDY8 824 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 SMCHD1A6NHR9 2005 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 ANKRD12Q6UB98 2062 aa8.15□□□□□ -1.1
LIMCH1-216ENST00000512820 DRGXA6NNA5 263 aa8.15□□□□□ -1.11
LIMCH1-216ENST00000512820 TARM1B6A8C7 271 aa8.15□□□□□ -1.11
LIMCH1-216ENST00000512820 STSP08842 583 aa8.15□□□□□ -1.11
LIMCH1-216ENST00000512820 BMP7P18075 431 aa8.15□□□□□ -1.11
LIMCH1-216ENST00000512820 GJA5P36382 358 aa8.15□□□□□ -1.11
LIMCH1-216ENST00000512820 FAM189BP81408 668 aa8.15□□□□□ -1.11
LIMCH1-216ENST00000512820 EMX1Q04741 257 aaPredicted RBP8.15□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms