RNA–Protein interactions for RNA: ENST00000508974.5

UBE2D3-228, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 4

Gene UBE2D3, Length 568 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-228ENST00000508974 KIRREL2Q6UWL6 708 aa14.09□□□□□ -0.15
UBE2D3-228ENST00000508974 STRA8Q7Z7C7 330 aa14.09□□□□□ -0.15
UBE2D3-228ENST00000508974 LAPTM4BQ86VI4 370 aa14.09□□□□□ -0.15
UBE2D3-228ENST00000508974 ATCAYQ86WG3 371 aa14.09□□□□□ -0.15
UBE2D3-228ENST00000508974 HIST1H2AHQ96KK5 128 aa14.09□□□□□ -0.15
UBE2D3-228ENST00000508974 HIST1H2AJQ99878 128 aa14.09□□□□□ -0.15
UBE2D3-228ENST00000508974 H2AFJQ9BTM1 129 aa14.09□□□□□ -0.15
UBE2D3-228ENST00000508974 ZNF552Q9H707 407 aaPredicted RBP14.09□□□□□ -0.15
UBE2D3-228ENST00000508974 ZBTB20Q9HC78 741 aaPredicted RBP14.09□□□□□ -0.15
UBE2D3-228ENST00000508974 SLAMF7Q9NQ25 335 aa14.09□□□□□ -0.15
UBE2D3-228ENST00000508974 ENAMQ9NRM1 1142 aa14.09□□□□□ -0.15
UBE2D3-228ENST00000508974 SEMA3GQ9NS98 782 aa14.09□□□□□ -0.15
UBE2D3-228ENST00000508974 ARL15Q9NXU5 204 aa14.09□□□□□ -0.15
UBE2D3-228ENST00000508974 C3orf18Q9UK00 162 aa14.09□□□□□ -0.15
UBE2D3-228ENST00000508974 NXT1Q9UKK6 140 aaKnown RBP14.09□□□□□ -0.15
UBE2D3-228ENST00000508974 IKZF3Q9UKT9 509 aa14.09□□□□□ -0.15
UBE2D3-228ENST00000508974 VWA7Q9Y334 891 aa14.09□□□□□ -0.15
UBE2D3-228ENST00000508974 PCDHGB7Q9Y5F8 929 aa14.09□□□□□ -0.15
UBE2D3-228ENST00000508974 PRRC2CQ9Y520 2896 aaKnown RBP14.09□□□□□ -0.15
UBE2D3-228ENST00000508974 COL12A1Q99715 3063 aa14.08□□□□□ -0.16
UBE2D3-228ENST00000508974 VSTM2BA6NLU5 285 aa14.08□□□□□ -0.16
UBE2D3-228ENST00000508974 SLC16A5O15375 505 aa14.08□□□□□ -0.16
UBE2D3-228ENST00000508974 RAD51CO43502 376 aa14.08□□□□□ -0.16
UBE2D3-228ENST00000508974 SORBS2O94875 1100 aaKnown RBP14.08□□□□□ -0.16
UBE2D3-228ENST00000508974 ALPPP05187 535 aa14.08□□□□□ -0.16
UBE2D3-228ENST00000508974 ANXA5P08758 320 aa14.08□□□□□ -0.16
UBE2D3-228ENST00000508974 CDH1P12830 882 aa14.08□□□□□ -0.16
UBE2D3-228ENST00000508974 CASQ1P31415 396 aa14.08□□□□□ -0.16
UBE2D3-228ENST00000508974 MEF2AQ02078 507 aaPredicted RBP14.08□□□□□ -0.16
UBE2D3-228ENST00000508974 MGAT5Q09328 741 aa14.08□□□□□ -0.16
UBE2D3-228ENST00000508974 AIMP2Q13155 320 aaKnown RBP14.08□□□□□ -0.16
UBE2D3-228ENST00000508974 DSG2Q14126 1118 aa14.08□□□□□ -0.16
UBE2D3-228ENST00000508974 SYT10Q6XYQ8 523 aa14.08□□□□□ -0.16
UBE2D3-228ENST00000508974 PRSS41Q7RTY9 318 aa14.08□□□□□ -0.16
UBE2D3-228ENST00000508974 GALNT7Q86SF2 657 aa14.08□□□□□ -0.16
UBE2D3-228ENST00000508974 C17orf64Q86WR6 236 aa14.08□□□□□ -0.16
UBE2D3-228ENST00000508974 Q8NA96 180 aa14.08□□□□□ -0.16
UBE2D3-228ENST00000508974 OR11G2Q8NGC1 345 aa14.08□□□□□ -0.16
UBE2D3-228ENST00000508974 OR9A4Q8NGU2 314 aa14.08□□□□□ -0.16
UBE2D3-228ENST00000508974 ZCCHC10Q8TBK6 192 aa14.08□□□□□ -0.16
UBE2D3-228ENST00000508974 DRC3Q9H069 523 aa14.08□□□□□ -0.16
UBE2D3-228ENST00000508974 ZNF160Q9HCG1 818 aa14.08□□□□□ -0.16
UBE2D3-228ENST00000508974 TMEM184CQ9NVA4 438 aa14.08□□□□□ -0.16
UBE2D3-228ENST00000508974 RNF14Q9UBS8 474 aa14.08□□□□□ -0.16
UBE2D3-228ENST00000508974 CDC14AQ9UNH5 594 aa14.08□□□□□ -0.16
UBE2D3-228ENST00000508974 HECTD1Q9ULT8 2610 aa14.07□□□□□ -0.16
UBE2D3-228ENST00000508974 FAM95CA0A1B0GW59 222 aa14.07□□□□□ -0.16
UBE2D3-228ENST00000508974 NPEPPSL1A6NEC2 478 aa14.07□□□□□ -0.16
UBE2D3-228ENST00000508974 FOXS1O43638 330 aa14.07□□□□□ -0.16
UBE2D3-228ENST00000508974 VPS4BO75351 444 aa14.07□□□□□ -0.16
UBE2D3-228ENST00000508974 ACPPP15309 386 aa14.07□□□□□ -0.16
UBE2D3-228ENST00000508974 RPS15AP62244 130 aaKnown RBP14.07□□□□□ -0.16
UBE2D3-228ENST00000508974 CSNK1G2P78368 415 aa14.07□□□□□ -0.16
UBE2D3-228ENST00000508974 EEF1A2Q05639 463 aaKnown RBP14.07□□□□□ -0.16
UBE2D3-228ENST00000508974 CALCOCO2Q13137 446 aa14.07□□□□□ -0.16
UBE2D3-228ENST00000508974 PLEKHN1Q494U1 663 aaPredicted RBP14.07□□□□□ -0.16
UBE2D3-228ENST00000508974 TMEM207Q6UWW9 146 aa14.07□□□□□ -0.16
UBE2D3-228ENST00000508974 VN1R4Q7Z5H5 301 aa14.07□□□□□ -0.16
UBE2D3-228ENST00000508974 SHISA5Q8N114 240 aa14.07□□□□□ -0.16
UBE2D3-228ENST00000508974 AMER3Q8N944 861 aa14.07□□□□□ -0.16
UBE2D3-228ENST00000508974 SPATA4Q8NEY3 305 aa14.07□□□□□ -0.16
UBE2D3-228ENST00000508974 THOC3Q96J01 351 aaKnown RBP14.07□□□□□ -0.16
UBE2D3-228ENST00000508974 UNKQ9C0B0 810 aaKnown RBP14.07□□□□□ -0.16
UBE2D3-228ENST00000508974 SAYSD1Q9NPB0 183 aa14.07□□□□□ -0.16
UBE2D3-228ENST00000508974 CORO1CQ9ULV4 474 aaPredicted RBP14.07□□□□□ -0.16
UBE2D3-228ENST00000508974 VPS4AQ9UN37 437 aa14.07□□□□□ -0.16
UBE2D3-228ENST00000508974 SHANK1Q9Y566 2161 aa14.07□□□□□ -0.16
UBE2D3-228ENST00000508974 IDSB3KWA1 339 aa14.06□□□□□ -0.16
UBE2D3-228ENST00000508974 E7ESA3 106 aa14.06□□□□□ -0.16
UBE2D3-228ENST00000508974 CDC7O00311 574 aa14.06□□□□□ -0.16
UBE2D3-228ENST00000508974 TXNDC9O14530 226 aa14.06□□□□□ -0.16
UBE2D3-228ENST00000508974 MAP2K7O14733 419 aa14.06□□□□□ -0.16
UBE2D3-228ENST00000508974 PRPF4O43172 522 aaKnown RBP eCLIP14.06□□□□□ -0.164e-7■■□□□ 11.8
UBE2D3-228ENST00000508974 HEXBP07686 556 aa14.06□□□□□ -0.16
UBE2D3-228ENST00000508974 IL1RNP18510 177 aa14.06□□□□□ -0.16
UBE2D3-228ENST00000508974 GNLYP22749 145 aa14.06□□□□□ -0.16
UBE2D3-228ENST00000508974 SSTR1P30872 391 aa14.06□□□□□ -0.16
UBE2D3-228ENST00000508974 BCL6P41182 706 aa14.06□□□□□ -0.16
UBE2D3-228ENST00000508974 INPP5JQ15735 1006 aaPredicted RBP14.06□□□□□ -0.16
UBE2D3-228ENST00000508974 NDUFA9Q16795 377 aa14.06□□□□□ -0.16
UBE2D3-228ENST00000508974 ZXDCQ2QGD7 858 aaPredicted RBP14.06□□□□□ -0.16
UBE2D3-228ENST00000508974 MFSD4BQ5TF39 518 aa14.06□□□□□ -0.16
UBE2D3-228ENST00000508974 IRAK1BP1Q5VVH5 260 aa14.06□□□□□ -0.16
UBE2D3-228ENST00000508974 GARNL3Q5VVW2 1013 aa14.06□□□□□ -0.16
UBE2D3-228ENST00000508974 CAPN13Q6MZZ7 669 aaPredicted RBP14.06□□□□□ -0.16
UBE2D3-228ENST00000508974 LCTLQ6UWM7 567 aa14.06□□□□□ -0.16
UBE2D3-228ENST00000508974 ZC3HC1Q86WB0 502 aaKnown RBP14.06□□□□□ -0.16
UBE2D3-228ENST00000508974 ARHGEF39Q8N4T4 335 aa14.06□□□□□ -0.16
UBE2D3-228ENST00000508974 AMER2Q8N7J2 671 aa14.06□□□□□ -0.16
UBE2D3-228ENST00000508974 BBOF1Q8ND07 529 aa14.06□□□□□ -0.16
UBE2D3-228ENST00000508974 PYROXD1Q8WU10 500 aa14.06□□□□□ -0.16
UBE2D3-228ENST00000508974 PNPLA2Q96AD5 504 aa14.06□□□□□ -0.16
UBE2D3-228ENST00000508974 TSNARE1Q96NA8 513 aa14.06□□□□□ -0.16
UBE2D3-228ENST00000508974 ERP44Q9BS26 406 aa14.06□□□□□ -0.16
UBE2D3-228ENST00000508974 SGPP1Q9BX95 441 aa14.06□□□□□ -0.16
UBE2D3-228ENST00000508974 TRIM54Q9BYV2 358 aa14.06□□□□□ -0.16
UBE2D3-228ENST00000508974 ILKAPQ9H0C8 392 aaPredicted RBP14.06□□□□□ -0.16
UBE2D3-228ENST00000508974 PCBD2Q9H0N5 130 aa14.06□□□□□ -0.16
UBE2D3-228ENST00000508974 SMYD2Q9NRG4 433 aa14.06□□□□□ -0.16
UBE2D3-228ENST00000508974 HCN3Q9P1Z3 774 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms