RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 RPL36Q9Y3U8 105 aaKnown RBP10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 K7ERQ8 282 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 CCR4P51679 360 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 NCBP2P52298 156 aaKnown RBP eCLIP10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 LGALS3BPQ08380 585 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 GANABQ14697 944 aaKnown RBP10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 PGM2L1Q6PCE3 622 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 AKAP14Q86UN6 197 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 HDDC3Q8N4P3 179 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 TRIM63Q969Q1 353 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 UBXN10Q96LJ8 280 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 MUS81Q96NY9 551 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 ANKRD60Q9BZ19 345 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 CREBZFQ9NS37 354 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 SOHLH2Q9NX45 425 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 CMTM6Q9NX76 183 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 IL17CQ9P0M4 197 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 GJD2Q9UKL4 321 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 WBP11Q9Y2W2 641 aaKnown RBP10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 ACTL7AQ9Y615 435 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 PFKLP17858 780 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 GABRB3P28472 473 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 CDKN1CP49918 316 aaPredicted RBP10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 PLA2G16P53816 162 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 FOXA1P55317 472 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 CYBRD1Q53TN4 286 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 KLHL17Q6TDP4 642 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 Q6ZVL8 140 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 MAVSQ7Z434 540 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 FAM220AQ7Z4H9 259 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 SMPDL3AQ92484 453 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 KLF16Q9BXK1 252 aaPredicted RBP10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 REEP4Q9H6H4 257 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 SMOXQ9NWM0 555 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 TRNAU1APQ9NX07 287 aaKnown RBP10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 HMX2A2RU54 273 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 PSMD11O00231 422 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 KCNA5P22460 613 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 PREPP48147 710 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 RAB14P61106 215 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 MGAT3Q09327 533 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 TMEM44Q2T9K0 475 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 KLHL35Q6PF15 583 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 FAM131AQ6UXB0 335 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 TMC5Q6UXY8 1006 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 CXXC5Q7LFL8 322 aaKnown RBP10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 MMAAQ8IVH4 418 aaKnown RBP10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 GPR65Q8IYL9 337 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 OR5AK3PQ8NH89 298 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 ZNF671Q8TAW3 534 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 PIK3R3Q92569 461 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 GLYATL1Q969I3 302 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 C1GALT1C1Q96EU7 318 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 CAMK1GQ96NX5 476 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 SPRTNQ9H040 489 aaPredicted RBP10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 LMAN2LQ9H0V9 348 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 TRBC2A0A5B9 178 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 CASKO14936 926 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 ELK4P28324 431 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 ETV3P41162 512 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 RAB39AQ14964 217 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 MOGQ16653 247 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 KLHL22Q53GT1 634 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 TMIGD1Q6UXZ0 262 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 RANBP3LQ86VV4 465 aaPredicted RBP10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 DCUN1D3Q8IWE4 304 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 LSMEM2Q8N112 164 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 TMEM125Q96AQ2 219 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 RTP3Q9BQQ7 232 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 HSFX1Q9UBD0 423 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 TAC3Q9UHF0 121 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 SATB2Q9UPW6 733 aa10.44□□□□□ -0.74
LIMCH1-205ENST00000503057 SLC30A4O14863 429 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 CLIC3O95833 236 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 VIPP01282 170 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 HIST1H2ABP04908 130 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 PRKAR1AP10644 381 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 PRKACGP22612 351 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 PSMA3P25788 255 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 RPL4P36578 427 aaKnown RBP10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 CASP9P55211 416 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 TAS2R50P59544 299 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 ZNF33BQ06732 778 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 BNIP3Q12983 259 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 TARDBPQ13148 414 aaKnown RBP eCLIP10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 ATAT1Q5SQI0 421 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 LETMD1Q6P1Q0 360 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 HIST3H2AQ7L7L0 130 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 FAM129CQ86XR2 697 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 LINC00471Q8N535 108 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 FAR1Q8WVX9 515 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 SLC9A6Q92581 669 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 HIST1H2ACQ93077 130 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 ATOH8Q96SQ7 321 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 KATNBL1Q9H079 304 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 NRXN2Q9P2S2 1712 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 TCRBV3S1A0A5B6 114 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 SNPHO15079 494 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 ADAMTS4O75173 837 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 OPN1SWP03999 348 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms