RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 NYXQ9GZU5 481 aa4.73□□□□□ -1.65
SF3B1-212ENST00000496458 MED20Q9H944 212 aa4.73□□□□□ -1.65
SF3B1-212ENST00000496458 CDH20Q9HBT6 801 aa4.73□□□□□ -1.65
SF3B1-212ENST00000496458 CHKBQ9Y259 395 aa4.73□□□□□ -1.65
SF3B1-212ENST00000496458 COL5A2P05997 1499 aaPredicted RBP4.73□□□□□ -1.65
SF3B1-212ENST00000496458 MAGI1Q96QZ7 1491 aaPredicted RBP4.73□□□□□ -1.65
SF3B1-212ENST00000496458 KIF27Q86VH2 1401 aa4.72□□□□□ -1.65
SF3B1-212ENST00000496458 A0A1W2PPK0 400 aa4.72□□□□□ -1.65
SF3B1-212ENST00000496458 TSPY2A6NKD2 308 aa4.72□□□□□ -1.65
SF3B1-212ENST00000496458 MPTX1A8MV57 137 aa4.72□□□□□ -1.65
SF3B1-212ENST00000496458 KRTAP9-6A8MVA2 160 aa4.72□□□□□ -1.65
SF3B1-212ENST00000496458 H0YAE9 185 aa4.72□□□□□ -1.65
SF3B1-212ENST00000496458 TEX28O15482 410 aa4.72□□□□□ -1.65
SF3B1-212ENST00000496458 TADA2AO75478 443 aa4.72□□□□□ -1.65
SF3B1-212ENST00000496458 ATP5BP06576 529 aaKnown RBP4.72□□□□□ -1.65
SF3B1-212ENST00000496458 TSPY3P0CV98 308 aa4.72□□□□□ -1.65
SF3B1-212ENST00000496458 TSPY8P0CW00 308 aa4.72□□□□□ -1.65
SF3B1-212ENST00000496458 PRKAR1AP10644 381 aa4.72□□□□□ -1.65
SF3B1-212ENST00000496458 GP1BBP13224 206 aa4.72□□□□□ -1.65
SF3B1-212ENST00000496458 RPL35AP18077 110 aaKnown RBP4.72□□□□□ -1.65
SF3B1-212ENST00000496458 GATA2P23769 480 aaPredicted RBP4.72□□□□□ -1.65
SF3B1-212ENST00000496458 AZGP1P25311 298 aaKnown RBP4.72□□□□□ -1.65
SF3B1-212ENST00000496458 HLA-FP30511 346 aa4.72□□□□□ -1.65
SF3B1-212ENST00000496458 MC5RP33032 325 aa4.72□□□□□ -1.65
SF3B1-212ENST00000496458 RGS19P49795 217 aa4.72□□□□□ -1.65
SF3B1-212ENST00000496458 ASCL1P50553 236 aa4.72□□□□□ -1.65
SF3B1-212ENST00000496458 CSE1LP55060 971 aaKnown RBP4.72□□□□□ -1.65
SF3B1-212ENST00000496458 POLR2LP62875 67 aaKnown RBP4.72□□□□□ -1.65
SF3B1-212ENST00000496458 MYL7Q01449 175 aa4.72□□□□□ -1.65
SF3B1-212ENST00000496458 TSPY1Q01534 308 aa4.72□□□□□ -1.65
SF3B1-212ENST00000496458 RALGDSQ12967 914 aa4.72□□□□□ -1.65
SF3B1-212ENST00000496458 ZNF239Q16600 458 aaKnown RBP4.72□□□□□ -1.65
SF3B1-212ENST00000496458 TCTEX1D4Q5JR98 221 aa4.72□□□□□ -1.65
SF3B1-212ENST00000496458 C9orf152Q5JTZ5 239 aa4.72□□□□□ -1.65
SF3B1-212ENST00000496458 SPINK14Q6IE38 97 aa4.72□□□□□ -1.65
SF3B1-212ENST00000496458 KIF6Q6ZMV9 814 aa4.72□□□□□ -1.65
SF3B1-212ENST00000496458 GPRIN3Q6ZVF9 776 aa4.72□□□□□ -1.65
SF3B1-212ENST00000496458 IQCHQ86VS3 1027 aa4.72□□□□□ -1.65
SF3B1-212ENST00000496458 HSCBQ8IWL3 235 aa4.72□□□□□ -1.65
SF3B1-212ENST00000496458 Q8NBF4 154 aa4.72□□□□□ -1.65
SF3B1-212ENST00000496458 OR7A2PQ8NGA2 310 aa4.72□□□□□ -1.65
SF3B1-212ENST00000496458 PRICKLE1Q96MT3 831 aaPredicted RBP4.72□□□□□ -1.65
SF3B1-212ENST00000496458 MUS81Q96NY9 551 aa4.72□□□□□ -1.65
SF3B1-212ENST00000496458 MYCBPQ99417 103 aaPredicted RBP4.72□□□□□ -1.65
SF3B1-212ENST00000496458 FEVQ99581 238 aa4.72□□□□□ -1.65
SF3B1-212ENST00000496458 SLC2A11Q9BYW1 496 aa4.72□□□□□ -1.65
SF3B1-212ENST00000496458 SYNJ2O15056 1496 aa4.72□□□□□ -1.65
SF3B1-212ENST00000496458 GPRASP1Q5JY77 1395 aa4.71□□□□□ -1.66
SF3B1-212ENST00000496458 A0A087WUV0 522 aaPredicted RBP4.71□□□□□ -1.66
SF3B1-212ENST00000496458 TRBV5-5A0A0J9YX44 114 aa4.71□□□□□ -1.66
SF3B1-212ENST00000496458 C19orf81C9J6K1 198 aa4.71□□□□□ -1.66
SF3B1-212ENST00000496458 IGHDP01880 384 aa4.71□□□□□ -1.66
SF3B1-212ENST00000496458 SAGP10523 405 aaPredicted RBP4.71□□□□□ -1.66
SF3B1-212ENST00000496458 RBMS1P29558 406 aaKnown RBP4.71□□□□□ -1.66
SF3B1-212ENST00000496458 CAPZA2P47755 286 aa4.71□□□□□ -1.66
SF3B1-212ENST00000496458 KRTAP10-3P60369 221 aa4.71□□□□□ -1.66
SF3B1-212ENST00000496458 TRAP1Q12931 704 aaKnown RBP4.71□□□□□ -1.66
SF3B1-212ENST00000496458 CDH18Q13634 790 aa4.71□□□□□ -1.66
SF3B1-212ENST00000496458 NPTX1Q15818 432 aa4.71□□□□□ -1.66
SF3B1-212ENST00000496458 GPR33Q49SQ1 333 aa4.71□□□□□ -1.66
SF3B1-212ENST00000496458 CES4AQ5XG92 561 aa4.71□□□□□ -1.66
SF3B1-212ENST00000496458 KRT39Q6A163 491 aa4.71□□□□□ -1.66
SF3B1-212ENST00000496458 ZNF343Q6P1L6 599 aa4.71□□□□□ -1.66
SF3B1-212ENST00000496458 PLPPR4Q7Z2D5 763 aa4.71□□□□□ -1.66
SF3B1-212ENST00000496458 PRPF39Q86UA1 669 aaKnown RBP4.71□□□□□ -1.66
SF3B1-212ENST00000496458 ARL10Q8N8L6 244 aa4.71□□□□□ -1.66
SF3B1-212ENST00000496458 AQP11Q8NBQ7 271 aa4.71□□□□□ -1.66
SF3B1-212ENST00000496458 CCDC191Q8NCU4 936 aa4.71□□□□□ -1.66
SF3B1-212ENST00000496458 ARSGQ96EG1 525 aa4.71□□□□□ -1.66
SF3B1-212ENST00000496458 OTUB1Q96FW1 271 aaPredicted RBP4.71□□□□□ -1.66
SF3B1-212ENST00000496458 ADPGKQ9BRR6 497 aa4.71□□□□□ -1.66
SF3B1-212ENST00000496458 DBNDD1Q9H9R9 158 aa4.71□□□□□ -1.66
SF3B1-212ENST00000496458 MUTYHQ9UIF7 546 aa4.71□□□□□ -1.66
SF3B1-212ENST00000496458 ERICH3Q5RHP9 1530 aa4.71□□□□□ -1.66
SF3B1-212ENST00000496458 FHAD1B1AJZ9 1412 aa4.71□□□□□ -1.66
SF3B1-212ENST00000496458 TP53BP1Q12888 1972 aaPredicted RBP4.71□□□□□ -1.66
SF3B1-212ENST00000496458 IGHV3OR16-10A0A075B7F0 116 aa4.7□□□□□ -1.66
SF3B1-212ENST00000496458 TRIM64A6NGJ6 449 aa4.7□□□□□ -1.66
SF3B1-212ENST00000496458 CASTOR2A6NHX0 329 aa4.7□□□□□ -1.66
SF3B1-212ENST00000496458 TRIM64BA6NI03 449 aa4.7□□□□□ -1.66
SF3B1-212ENST00000496458 EPM2AB3EWF7 344 aa4.7□□□□□ -1.66
SF3B1-212ENST00000496458 PI4K2BG5E9Z4 385 aa4.7□□□□□ -1.66
SF3B1-212ENST00000496458 ATP1B1P05026 303 aa4.7□□□□□ -1.66
SF3B1-212ENST00000496458 CSN3P07498 182 aa4.7□□□□□ -1.66
SF3B1-212ENST00000496458 EPCAMP16422 314 aa4.7□□□□□ -1.66
SF3B1-212ENST00000496458 MUTP22033 750 aa4.7□□□□□ -1.66
SF3B1-212ENST00000496458 TLX1P31314 330 aaPredicted RBP4.7□□□□□ -1.66
SF3B1-212ENST00000496458 TMEM50BP56557 158 aa4.7□□□□□ -1.66
SF3B1-212ENST00000496458 TMEM132DQ14C87 1099 aa4.7□□□□□ -1.66
SF3B1-212ENST00000496458 MTHFSDQ2M296 383 aaKnown RBP4.7□□□□□ -1.66
SF3B1-212ENST00000496458 ERMARDQ5T6L9 678 aa4.7□□□□□ -1.66
SF3B1-212ENST00000496458 VSIG1Q86XK7 387 aa4.7□□□□□ -1.66
SF3B1-212ENST00000496458 NOA1Q8NC60 698 aaKnown RBP4.7□□□□□ -1.66
SF3B1-212ENST00000496458 KCNE4Q8WWG9 221 aa4.7□□□□□ -1.66
SF3B1-212ENST00000496458 MAP3K3Q99759 626 aa4.7□□□□□ -1.66
SF3B1-212ENST00000496458 SLF1Q9BQI6 1058 aa4.7□□□□□ -1.66
SF3B1-212ENST00000496458 TXLNGYQ9BZA5 131 aa4.7□□□□□ -1.66
SF3B1-212ENST00000496458 XPO4Q9C0E2 1151 aaKnown RBP4.7□□□□□ -1.66
SF3B1-212ENST00000496458 STAU2Q9NUL3 570 aaKnown RBP eCLIP4.7□□□□□ -1.66
SF3B1-212ENST00000496458 CSAG2Q9Y5P2 127 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms